Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Reverse (-)

9311136 .. 9311766

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG118800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTTCAAGCTTAGGTACCGTGGCTATGCTCAATGTTAGAAGCTTCACCATCAAGTCATCCAAAAACAGAAACCCCTGCAAACCAACTATAAAAACAGTATCCCTTCTCTCCCACAAAGACCTACCTATAAGCTTCACTACCTTCAAATCCATGGTGAAGACCGAAACTTCCGGTTCCCCAAGCAGGACTACGGCCATTACCGGTACCATCCTGTCCACCTTGATCTCTTCAGATCCTGCTTTGAGTGCACAACGAGTTGCAGATGTCGCAGAAGGTGATAATCGTGCCTTGGCACTCCTAATACCTGTAATTCCAGCTATACTTTGGGTGCTTTACAACATCCTTGAGCCAGCTTTAAACCAAATCAACAGAATGCAAAGTGAAAAGGGAGTCACTAGCCGAAAAAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

138

Amino Acids

14.93

Weight (kDa)

10.4

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbY	PF06298	94 - 126	1.8e-13	Photosystem II protein Y (PsbY)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	17, 206
AccB1I	GGYRCC	2 cut(s)	17, 206
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	19, 208
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	9, 148
AluBI	AGCT	5 cut(s)	12, 45, 135, 320, 356
AluI	AGCT	5 cut(s)	12, 45, 135, 320, 356
Alw21I	GWGCWC	1 cut(s)	253
Alw44I	GTGCAC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	230
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	195
ApaLI	GTGCAC	1 cut(s)	249
AsiGI	ACCGGT	1 cut(s)	203
Asp718I	GGTACC	2 cut(s)	17, 206
AsuHPI	GGTGA	3 cut(s)	40, 169, 290
BaeGI	GKGCMC	1 cut(s)	253
BanI	GGYRCC	2 cut(s)	17, 206
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	253
BccI	CCATC	2 cut(s)	59, 218
BceAI	ACGGC	1 cut(s)	210
BciVI	GTATCC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	399
BfuI	GTATCC	1 cut(s)	112
BmiI	GGNNCC	3 cut(s)	19, 178, 208
BpiI	GAAGAC	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	21, 153, 291
BsaWI	WCCGGW	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	203
BseDI	CCNNGG	3 cut(s)	21, 153, 291
BseGI	GGATG	3 cut(s)	59, 210, 342
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	253
BshFI	GGCC	1 cut(s)	197
BshNI	GGYRCC	2 cut(s)	17, 206
BshTI	ACCGGT	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	174, 204
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	225, 235
Bsp19I	CCATGG	1 cut(s)	153
BspANI	GGCC	1 cut(s)	197
BspLI	GGNNCC	3 cut(s)	19, 178, 208
BspPI	GGATC	1 cut(s)	230
BspT107I	GGYRCC	2 cut(s)	17, 206
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	21, 153, 291
BssMI	GATC	2 cut(s)	225, 235
BssT1I	CCWWGG	2 cut(s)	153, 291
Bst4CI	ACNGT	2 cut(s)	22, 100
Bst6I	CTCTTC	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	13
BstDSI	CCRYGG	2 cut(s)	21, 153
BstF5I	GGATG	3 cut(s)	59, 210, 342
BstKTI	GATC	2 cut(s)	228, 238
BstMBI	GATC	2 cut(s)	225, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 269
BstSLI	GKGCMC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	2 cut(s)	21, 153
BtsCI	GGATG	3 cut(s)	59, 210, 342
Cac8I	GCNNGC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr10I	RCCGGY	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	18, 207
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	1 cut(s)	154
CviQI	GTAC	2 cut(s)	18, 207
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	2 cut(s)	227, 237
DpnII	GATC	2 cut(s)	225, 235
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco130I	CCWWGG	2 cut(s)	153, 291
Eco57I	CTGAAG	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	153, 291
ErhI	CCWWGG	2 cut(s)	153, 291
FaeI	CATG	1 cut(s)	157
FaiI	YATR	5 cut(s)	29, 92, 131, 155, 323
FatI	CATG	1 cut(s)	153
FokI	GGATG	3 cut(s)	46, 197, 329
FspBI	CTAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	2 cut(s)	174, 204
Hin1II	CATG	1 cut(s)	157
HindIII	AAGCTT	3 cut(s)	10, 43, 133
HinfI	GANTC	1 cut(s)	393
HpaII	CCGG	2 cut(s)	174, 204
HphI	GGTGA	3 cut(s)	40, 169, 290
Hpy166II	GTNNAC	2 cut(s)	219, 251
Hpy188I	TCNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	219, 251
HpyAV	CCTTC	3 cut(s)	116, 154, 269
HpyCH4III	ACNGT	2 cut(s)	22, 100
HpyCH4V	TGCA	4 cut(s)	81, 251, 263, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 269
HpyF3I	CTNAG	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	157
KpnI	GGTACC	2 cut(s)	21, 210
Kzo9I	GATC	2 cut(s)	225, 235
LpnPI	CCDG	9 cut(s)	91, 172, 187, 217, 227, 252, 321, 330, 366
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	2 cut(s)	227, 237
MboI	GATC	2 cut(s)	225, 235
MboII	GAAGA	2 cut(s)	172, 222
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	402
MseI	TTAA	1 cut(s)	359
MspI	CCGG	2 cut(s)	174, 204
Mva1269I	GAATGC	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	248, 269
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	225, 235
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	3 cut(s)	19, 178, 208
NmuCI	GTSAC	1 cut(s)	394
PctI	GAATGC	1 cut(s)	381
PinAI	ACCGGT	1 cut(s)	203
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
PspN4I	GGNNCC	3 cut(s)	19, 178, 208
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	2 cut(s)	19, 208
RsaNI	GTAC	2 cut(s)	18, 207
SaqAI	TTAA	1 cut(s)	359
Sau3AI	GATC	2 cut(s)	225, 235
SchI	GAGTC	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	1 cut(s)	312
SspMI	CTAG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	153, 291
TaaI	ACNGT	2 cut(s)	22, 100
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	312
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TseFI	GTSAC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	394
VneI	GTGCAC	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	324
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.