Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Reverse (-)

9590997 .. 9591380

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG123600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCTATGCTCAATGTTAGAAGCTTCACCATCAAGTCATCCAAAAACAGAAACCCCTGCAAACCAACTATAAAAACAGTATCCCTTCTCTCCCACAAAGACCTACCTATAAGCTTCACTACCTTCAAATCCATGGTGAAGACCGAAACTTCCGGTTCCCCAAGCAGGACTACGGCCATTACCGGTACCATCCTGTCCACCTTGATCTCTTCAGATCCTGCTTTGAGTGCACAACGAGTTGCAGATGTCGCAGAAGGTGATAATCGTGCCTTGGCACTCCTAATACCTGTAATTCCAGCTATACTTTGGGTGCTTTACAACATCCTTGAGCCAGCTTTAAACCAAATCAACAGAATGCAAAGTGAAAAGGGAGGGAGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

127

Amino Acids

13.74

Weight (kDa)

9.91

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbY	PF06298	87 - 119	1.6e-13	Photosystem II protein Y (PsbY)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgeI	ACCGGT	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	4 cut(s)	24, 114, 299, 335
AluI	AGCT	4 cut(s)	24, 114, 299, 335
Alw21I	GWGCWC	1 cut(s)	232
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	228
AsiGI	ACCGGT	1 cut(s)	182
Asp718I	GGTACC	1 cut(s)	185
AsuHPI	GGTGA	3 cut(s)	19, 148, 269
BaeGI	GKGCMC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	232
BccI	CCATC	2 cut(s)	38, 197
BceAI	ACGGC	1 cut(s)	189
BciVI	GTATCC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	382
BfuI	GTATCC	1 cut(s)	91
BmiI	GGNNCC	2 cut(s)	157, 187
BpiI	GAAGAC	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	132, 270
BsaWI	WCCGGW	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse118I	RCCGGY	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	132, 270
BseGI	GGATG	3 cut(s)	38, 189, 321
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	185
BshTI	ACCGGT	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	153, 183
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	204, 214
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	1 cut(s)	176
BspLI	GGNNCC	2 cut(s)	157, 187
BspPI	GGATC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	132, 270
BssMI	GATC	2 cut(s)	204, 214
BssT1I	CCWWGG	2 cut(s)	132, 270
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	3 cut(s)	38, 189, 321
BstKTI	GATC	2 cut(s)	207, 217
BstMBI	GATC	2 cut(s)	204, 214
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 248
BstSLI	GKGCMC	1 cut(s)	232
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	38, 189, 321
Cac8I	GCNNGC	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	186
CspAI	ACCGGT	1 cut(s)	182
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	7 cut(s)	5, 24, 114, 176, 299, 331, 335
CviKI_1	RGCY	7 cut(s)	5, 24, 114, 176, 299, 331, 335
CviQI	GTAC	1 cut(s)	186
DpnI	GATC	2 cut(s)	206, 216
DpnII	GATC	2 cut(s)	204, 214
DraI	TTTAAA	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	132, 270
Eco57I	CTGAAG	1 cut(s)	195
EcoT14I	CCWWGG	2 cut(s)	132, 270
ErhI	CCWWGG	2 cut(s)	132, 270
FaeI	CATG	1 cut(s)	136
FaiI	YATR	5 cut(s)	8, 71, 110, 134, 302
FatI	CATG	1 cut(s)	132
FokI	GGATG	3 cut(s)	25, 176, 308
FspBI	CTAG	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	2 cut(s)	153, 183
Hin1II	CATG	1 cut(s)	136
HindIII	AAGCTT	2 cut(s)	22, 112
HinfI	GANTC	1 cut(s)	376
HpaII	CCGG	2 cut(s)	153, 183
HphI	GGTGA	3 cut(s)	19, 148, 269
Hpy166II	GTNNAC	2 cut(s)	198, 230
Hpy188I	TCNGA	1 cut(s)	214
Hpy8I	GTNNAC	2 cut(s)	198, 230
HpyAV	CCTTC	3 cut(s)	95, 133, 248
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	4 cut(s)	60, 230, 242, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 248
Hsp92II	CATG	1 cut(s)	136
KpnI	GGTACC	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	204, 214
LpnPI	CCDG	9 cut(s)	70, 151, 166, 196, 206, 231, 300, 309, 345
MaeI	CTAG	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	206, 216
MboI	GATC	2 cut(s)	204, 214
MboII	GAAGA	2 cut(s)	151, 201
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	1 cut(s)	291
MnlI	CCTC	1 cut(s)	365
MseI	TTAA	1 cut(s)	338
MspI	CCGG	2 cut(s)	153, 183
Mva1269I	GAATGC	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	227, 248
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	204, 214
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	2 cut(s)	157, 187
NmuCI	GTSAC	1 cut(s)	377
PctI	GAATGC	1 cut(s)	360
PinAI	ACCGGT	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	157, 187
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	338
Sau3AI	GATC	2 cut(s)	204, 214
SduI	GDGCHC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	291
SspMI	CTAG	1 cut(s)	382
StyI	CCWWGG	2 cut(s)	132, 270
TaaI	ACNGT	1 cut(s)	79
TaqII	GACCGA	1 cut(s)	158
TasI	AATT	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	303
XspI	CTAG	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.