Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Forward (+)

6202901 .. 6203503

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCAGCAACCATGGCAACAATGGCAATAATCAACGCAAAGTGCTTGAGCTCCACCACCACCCCCAAAGTCACCACCAAGCTAACCGCAGCAAAACCCACCTCCCTCCTCTCATTTCAAAACCTTCCAAAGGGCCTAAGCCTCTCAAAACCAATTGAACTCCCCAACATGTCCCCTTCCCTAGCCGGCACAGCCATGGCAGGAGCCATCTTCTCGACCCTCAGCGCCTCCGACCCCGCTCTCGCAGCCCAGCAGATCGCCCAAATCGCCGAAGGCGACAACCGCGGCCTCGCCCTCCTGCTGCCTATCATTCCCGCCATAGCTTGGGTTCTGTTTAACATTCTTCAACCGGCACTCAACCAATTCAACCGCATGACAAACAAGAGCGTGATCGTCGGGCTCGGGCTCGGTGGGTTGGCTGCTTCTGGGTTCGTCTTGACCCCCGAGGCGTCCGCTGGAGAATTCGCCATGATTGCGGCTGATGCCTCCGCTGGCGACAATAGGGGGCAGTTGTTGCTGTTTGTGGTGGCTCCGGCGATTCTGTGGGTGCTTTACAACATTCTACAACCGGCTTTGAACCAAATTAACAGGATGAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

201

Amino Acids

20.74

Weight (kDa)

9.58

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbY	PF06298	93 - 125	2.5e-15	Photosystem II protein Y (PsbY)
PsbY	PF06298	166 - 198	7.1e-11	Photosystem II protein Y (PsbY)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	324
AccBSI	CCGCTC	1 cut(s)	239
AccII	CGCG	1 cut(s)	285
AciI	CCGC	9 cut(s)	87, 237, 283, 285, 315, 370, 453, 476, 489
AcsI	RAATTY	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	449
AfiI	CCNNNNNNNGG	2 cut(s)	130, 324
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	5 cut(s)	119, 158, 347, 367, 577
AluBI	AGCT	3 cut(s)	51, 82, 323
AluI	AGCT	3 cut(s)	51, 82, 323
Alw21I	GWGCWC	1 cut(s)	53
Ama87I	CYCGRG	2 cut(s)	401, 443
AoxI	GGCC	2 cut(s)	133, 286
ApeKI	GCWGC	5 cut(s)	5, 89, 245, 301, 419
ApoI	RAATTY	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	64
AvaI	CYCGRG	2 cut(s)	401, 443
BanII	GRGCYC	3 cut(s)	53, 402, 408
Bbv12I	GWGCWC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	221
BbvI	GCAGC	5 cut(s)	17, 101, 257, 288, 406
BccI	CCATC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	7 cut(s)	6, 90, 246, 286, 302, 420, 477
BlsI	GCNGC	7 cut(s)	7, 91, 247, 287, 303, 421, 478
BmeT110I	CYCGRG	2 cut(s)	401, 443
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	205, 531
BmsI	GCATC	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	477
Bpu10I	CCTNAGC	2 cut(s)	137, 221
BpuEI	CTTGAG	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	449
BsaJI	CCNNGG	4 cut(s)	12, 195, 283, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 324
Bse118I	RCCGGY	3 cut(s)	185, 349, 568
BseDI	CCNNGG	4 cut(s)	12, 195, 283, 444
BseGI	GGATG	1 cut(s)	597
BseLI	CCNNNNNNNGG	2 cut(s)	130, 324
BseMII	CTCAG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	5 cut(s)	17, 101, 257, 288, 406
BseYI	CCCAGC	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	135, 288
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	2 cut(s)	401, 443
BsiSI	CCGG	4 cut(s)	186, 350, 533, 569
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	130, 324
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	135, 288
BsoBI	CYCGRG	2 cut(s)	401, 443
Bsp1286I	GDGCHC	3 cut(s)	53, 402, 408
Bsp143I	GATC	2 cut(s)	255, 390
Bsp19I	CCATGG	2 cut(s)	12, 195
BspACI	CCGC	9 cut(s)	87, 237, 283, 285, 315, 370, 453, 476, 489
BspANI	GGCC	2 cut(s)	135, 288
BspCNI	CTCAG	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	205, 531
BsrBI	CCGCTC	1 cut(s)	239
BsrFI	RCCGGY	3 cut(s)	185, 349, 568
BssAI	RCCGGY	3 cut(s)	185, 349, 568
BssECI	CCNNGG	4 cut(s)	12, 195, 283, 444
BssMI	GATC	2 cut(s)	255, 390
BssNI	GRCGYC	1 cut(s)	449
BssT1I	CCWWGG	2 cut(s)	12, 195
BstACI	GRCGYC	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	187, 493
BstDEI	CTNAG	3 cut(s)	137, 221, 600
BstDSI	CCRYGG	3 cut(s)	12, 195, 283
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	597
BstFNI	CGCG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	258, 393
BstMBI	GATC	2 cut(s)	255, 390
BstMWI	GCNNNNNNNGC	9 cut(s)	14, 23, 191, 245, 266, 282, 473, 482, 514
BstNSI	RCATGY	1 cut(s)	172
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	5 cut(s)	17, 101, 257, 288, 406
BsuRI	GGCC	2 cut(s)	135, 288
BtgI	CCRYGG	3 cut(s)	12, 195, 283
BtsCI	GGATG	1 cut(s)	597
Cac8I	GCNNGC	2 cut(s)	187, 493
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	3 cut(s)	185, 349, 568
Cfr13I	GGNCC	1 cut(s)	133
Cfr42I	CCGCGG	1 cut(s)	286
CseI	GACGC	1 cut(s)	438
CviAII	CATG	5 cut(s)	13, 169, 196, 373, 469
DdeI	CTNAG	3 cut(s)	137, 221, 600
DpnI	GATC	2 cut(s)	257, 392
DpnII	GATC	2 cut(s)	255, 390
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	12, 195
Eco24I	GRGCYC	3 cut(s)	53, 402, 408
Eco53kI	GAGCTC	1 cut(s)	51
Eco88I	CYCGRG	2 cut(s)	401, 443
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	461
EcoT14I	CCWWGG	2 cut(s)	12, 195
EcoT38I	GRGCYC	3 cut(s)	53, 402, 408
ErhI	CCWWGG	2 cut(s)	12, 195
FaeI	CATG	5 cut(s)	16, 172, 199, 376, 472
FaiI	YATR	6 cut(s)	14, 170, 197, 320, 374, 470
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	5 cut(s)	12, 168, 195, 372, 468
FauI	CCCGC	2 cut(s)	244, 322
Fnu4HI	GCNGC	7 cut(s)	6, 90, 246, 286, 302, 420, 477
FriOI	GRGCYC	3 cut(s)	53, 402, 408
Fsp4HI	GCNGC	7 cut(s)	6, 90, 246, 286, 302, 420, 477
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	7 cut(s)	6, 90, 246, 286, 302, 420, 477
GsaI	CCCAGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	477
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	135, 288
HapII	CCGG	4 cut(s)	186, 350, 533, 569
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	5 cut(s)	16, 172, 199, 376, 472
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	538
HpaII	CCGG	4 cut(s)	186, 350, 533, 569
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	214, 436
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	3 cut(s)	134, 186, 266
HpyF10VI	GCNNNNNNNGC	9 cut(s)	14, 23, 191, 245, 266, 282, 473, 482, 514
HpyF3I	CTNAG	3 cut(s)	137, 221, 600
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	5 cut(s)	16, 172, 199, 376, 472
HspAI	GCGC	1 cut(s)	225
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
KspI	CCGCGG	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	255, 390
LmnI	GCTCC	3 cut(s)	56, 203, 535
Lsp1109I	GCAGC	5 cut(s)	17, 101, 257, 288, 406
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	257, 392
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	2 cut(s)	255, 390
MboII	GAAGA	2 cut(s)	202, 335
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	3 cut(s)	53, 402, 408
MluCI	AATT	4 cut(s)	153, 362, 461, 582
MmeI	TCCRAC	1 cut(s)	255
MroNI	GCCGGC	1 cut(s)	185
MseI	TTAA	2 cut(s)	336, 585
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	3 cut(s)	285, 455, 491
MspI	CCGG	4 cut(s)	186, 350, 533, 569
MunI	CAATTG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	9 cut(s)	14, 23, 191, 245, 266, 282, 473, 482, 514
NaeI	GCCGGC	1 cut(s)	187
NcoI	CCATGG	2 cut(s)	12, 195
NdeII	GATC	2 cut(s)	255, 390
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	5 cut(s)	16, 172, 199, 376, 472
NlaIV	GGNNCC	2 cut(s)	205, 531
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	172
PciI	ACATGT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	538
PflMI	CCANNNNNTGG	1 cut(s)	324
PkrI	GCNGC	7 cut(s)	7, 91, 247, 287, 303, 421, 478
PscI	ACATGT	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	205, 531
PspPI	GGNCC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	53
SacII	CCGCGG	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	336, 585
SatI	GCNGC	7 cut(s)	6, 90, 246, 286, 302, 420, 477
Sau3AI	GATC	2 cut(s)	255, 390
Sau96I	GGNCC	1 cut(s)	133
SduI	GDGCHC	3 cut(s)	53, 402, 408
SetI	ASST	6 cut(s)	53, 84, 104, 126, 325, 599
SfaNI	GCATC	1 cut(s)	472
Sfr303I	CCGCGG	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	4 cut(s)	153, 362, 461, 582
SsiI	CCGC	9 cut(s)	87, 237, 283, 285, 315, 370, 453, 476, 489
SspMI	CTAG	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	2 cut(s)	12, 195
TaqI	TCGA	1 cut(s)	215
TasI	AATT	4 cut(s)	153, 362, 461, 582
TauI	GCSGC	2 cut(s)	288, 479
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	2 cut(s)	336, 585
Tru9I	TTAA	2 cut(s)	336, 585
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	5 cut(s)	5, 89, 245, 301, 419
Tsp45I	GTSAC	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	324
XagI	CCTNNNNNAGG	1 cut(s)	128
XapI	RAATTY	1 cut(s)	461
XceI	RCATGY	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.