Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8440915.1

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Forward (+)

561 .. 1133

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8440915.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggctactacaatggcaataatgaacgccaagtgcttaagcaccaccaccaactcctcctccaaactcatccccaacctcaagccaatcaccaccacaaaacctatctccctcctctccatccaaaaccttccaaagggtctaaccagctcatcagccctagccggagccatcttcgccaccataagcgcctccgaacccgccttggctgctcagcaaatcgctcaaatcgccgaaggcgacaaccgtggccttgccctcctcctccccatcattcccgccatcgcttgggtcctctttaacatcttccagccggctctcaaccaaatcaaccgcatggtcaacaagagcgtcatcattggtctagggcttggcggtctcgccgcttccgggttcgtgtccactcctgaagcttctgccaatgaaatggccatgattggtgaagcagctgcaaaggcaggtgacagcaggggacagctcctcctcatagtggtggctccggctattctttgggtgctctacaacattctacaaccggctttgaaccagcttaacaagatgaggtcagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

190

Amino Acids

19.76

Weight (kDa)

9.52

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	449
Acc36I	ACCTGC	1 cut(s)	449
AccB7I	CCANNNNNTGG	1 cut(s)	288
AciI	CCGC	5 cut(s)	201, 279, 334, 375, 384
AcoI	YGGCCR	1 cut(s)	429
AcuI	CTGAAG	1 cut(s)	429
AfiI	CCNNNNNNNGG	4 cut(s)	136, 288, 390, 490
AflII	CTTAAG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	544
AluBI	AGCT	5 cut(s)	150, 413, 449, 478, 550
AluI	AGCT	5 cut(s)	150, 413, 449, 478, 550
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	383
AoxI	GGCC	2 cut(s)	250, 429
ApeKI	GCWGC	3 cut(s)	209, 446, 449
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	3 cut(s)	82, 452, 473
AvaII	GGWCC	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	3 cut(s)	196, 436, 458
BccI	CCATC	4 cut(s)	128, 179, 278, 290
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	2 cut(s)	161, 365
BfoI	RGCGCY	1 cut(s)	192
BfrI	CTTAAG	1 cut(s)	37
BfuAI	ACCTGC	1 cut(s)	449
BisI	GCNGC	4 cut(s)	210, 384, 447, 450
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	4 cut(s)	211, 385, 448, 451
Bme1390I	CCNGG	1 cut(s)	391
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	169, 293, 498
BmrFI	CCNGG	1 cut(s)	391
Bpu1102I	GCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	391
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	204, 247
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 465, 495
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 288, 390, 490
Bse118I	RCCGGY	2 cut(s)	313, 535
BseDI	CCNNGG	2 cut(s)	204, 247
BseGI	GGATG	2 cut(s)	69, 120
BseLI	CCNNNNNNNGG	4 cut(s)	136, 288, 390, 490
BseMII	CTCAG	1 cut(s)	227
BseRI	GAGGAG	7 cut(s)	46, 49, 104, 251, 254, 470, 473
BseXI	GCAGC	3 cut(s)	196, 436, 458
BshFI	GGCC	2 cut(s)	252, 431
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	5 cut(s)	165, 314, 390, 500, 536
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	4 cut(s)	136, 288, 390, 490
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	2 cut(s)	252, 431
Bso31I	GGTCTC	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp1720I	GCTNAGC	1 cut(s)	213
BspACI	CCGC	5 cut(s)	201, 279, 334, 375, 384
BspANI	GGCC	2 cut(s)	252, 431
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	169, 293, 498
BspMI	ACCTGC	1 cut(s)	449
BspTI	CTTAAG	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	383
BsrFI	RCCGGY	2 cut(s)	313, 535
BssAI	RCCGGY	2 cut(s)	313, 535
BssECI	CCNNGG	2 cut(s)	204, 247
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	248
BstAFI	CTTAAG	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	247
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	2 cut(s)	69, 120
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstMAI	GTCTC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 209, 230, 455
BstSCI	CCNGG	1 cut(s)	389
BstV1I	GCAGC	3 cut(s)	196, 436, 458
BstXI	CCANNNNNNTGG	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	252, 431
BtgI	CCRYGG	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	69, 120
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	2 cut(s)	313, 535
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	340
CviAII	CATG	2 cut(s)	337, 433
DdeI	CTNAG	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	429
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	340, 436
FaiI	YATR	4 cut(s)	185, 338, 434, 488
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	2 cut(s)	336, 432
FauI	CCCGC	2 cut(s)	208, 286
Fnu4HI	GCNGC	4 cut(s)	210, 384, 447, 450
FokI	GGATG	2 cut(s)	56, 107
Fsp4HI	GCNGC	4 cut(s)	210, 384, 447, 450
FspBI	CTAG	2 cut(s)	161, 365
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	4 cut(s)	210, 384, 447, 450
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	252, 431
HapII	CCGG	5 cut(s)	165, 314, 390, 500, 536
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	340, 436
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	411
HpaII	CCGG	5 cut(s)	165, 314, 390, 500, 536
HphI	GGTGA	3 cut(s)	82, 452, 473
Hpy166II	GTNNAC	2 cut(s)	343, 402
Hpy188I	TCNGA	2 cut(s)	196, 568
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	2 cut(s)	343, 402
HpyAV	CCTTC	2 cut(s)	140, 230
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4V	TGCA	1 cut(s)	452
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 209, 230, 455
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	340, 436
HspAI	GCGC	1 cut(s)	189
KroI	GCCGGC	1 cut(s)	313
KroNI	GCCGGC	1 cut(s)	315
LmnI	GCTCC	3 cut(s)	167, 483, 502
Lsp1109I	GCAGC	3 cut(s)	196, 436, 458
MaeI	CTAG	2 cut(s)	161, 365
MaeIII	GTNAC	1 cut(s)	461
MboII	GAAGA	2 cut(s)	166, 298
MhlI	GDGCHC	1 cut(s)	519
MlsI	TGGCCA	1 cut(s)	431
MluNI	TGGCCA	1 cut(s)	431
Mox20I	TGGCCA	1 cut(s)	431
MroNI	GCCGGC	1 cut(s)	313
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	3 cut(s)	38, 300, 552
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	449
MspCI	CTTAAG	1 cut(s)	37
MspI	CCGG	5 cut(s)	165, 314, 390, 500, 536
MspR9I	CCNGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	4 cut(s)	176, 209, 230, 455
NaeI	GCCGGC	1 cut(s)	315
NciI	CCSGG	1 cut(s)	391
NgoMIV	GCCGGC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	340, 436
NlaIV	GGNNCC	3 cut(s)	169, 293, 498
NmuCI	GTSAC	1 cut(s)	461
PaqCI	CACCTGC	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	288
PkrI	GCNGC	4 cut(s)	211, 385, 448, 451
PpuMI	RGGWCCY	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	292
PspN4I	GGNNCC	3 cut(s)	169, 293, 498
PspPI	GGNCC	1 cut(s)	292
PspPPI	RGGWCCY	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	449
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	3 cut(s)	38, 300, 552
SatI	GCNGC	4 cut(s)	210, 384, 447, 450
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	1 cut(s)	519
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	37, 80
SmoI	CTYRAG	2 cut(s)	37, 80
SsiI	CCGC	5 cut(s)	201, 279, 334, 375, 384
SspMI	CTAG	2 cut(s)	161, 365
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	248
TauI	GCSGC	1 cut(s)	386
Tru1I	TTAA	3 cut(s)	38, 300, 552
Tru9I	TTAA	3 cut(s)	38, 300, 552
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	3 cut(s)	209, 446, 449
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	38, 438
Van91I	CCANNNNNTGG	1 cut(s)	288
Vha464I	CTTAAG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	292
XagI	CCTNNNNNAGG	1 cut(s)	134
XspI	CTAG	2 cut(s)	161, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.