Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Forward (+)

6100402 .. 6101001

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCAGCGACCATGGCAACAGTGGCAATAATCAACGCAAAGTGCTTGAGCTCCACCACCACCCCCAAAGTCGCCACCAAGCTAACCGCCGCAAAGCCCACCTCCCTCCTCTCATTTCAAAACCTCCCAAAAGGTCTAACCCTCTCAAAACCTATTGAACCCTCCAACATGTCCCCTTCCCTCGCCGGCACCGCCATCGCCGGAGCCATCTTCTCCACCCTGAGCGCCTCCGACCCCGCCCTGGCCGCCCAGCAAGTCGCCCAAATCGCCGAAGGCGACAACCGCGGGCTCGCCCTCCTGCTGCCCATCATTCCCGCCATCGCTTGGGTTCTGTTCAACATTCTCCAACCGGCTCTCAACCAAATCAACCGCATGACAAACAAGAGCGTGGTCGTCGGGCTCGGGCTTGGTGGATTGGCTGCGTCCGGGTTTGTCTCGACGCCCGAGGCGTCCGCCGGCGAAATAGCCATGATTGCTGCTGATGCCGCCGGTGACAACAGGGGGCAGCTGTTGCTGTTTGTGGTGGCTCCGGCGATTCTGTGGGTGCTGTACAACATTCTACAACCGGCTTTGAACCAAATCAACAGGATGAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

200

Amino Acids

20.44

Weight (kDa)

9.58

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbY	PF06298	93 - 125	2.8e-15	Photosystem II protein Y (PsbY)
PsbY	PF06298	165 - 197	7.1e-11	Photosystem II protein Y (PsbY)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	324
AccII	CGCG	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	243
AcyI	GRCGYC	2 cut(s)	440, 449
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	241, 324
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	4 cut(s)	119, 158, 337, 574
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	51, 82, 508
AluI	AGCT	3 cut(s)	51, 82, 508
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	439
Ama87I	CYCGRG	2 cut(s)	401, 443
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	5 cut(s)	5, 301, 419, 476, 505
AspLEI	GCGC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	503
AvaI	CYCGRG	2 cut(s)	401, 443
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	3 cut(s)	53, 291, 402
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	5 cut(s)	17, 288, 406, 463, 517
BccI	CCATC	4 cut(s)	203, 215, 314, 326
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	439
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	8 cut(s)	6, 90, 246, 302, 420, 477, 486, 506
BlsI	GCNGC	8 cut(s)	7, 91, 247, 303, 421, 478, 487, 507
Bme1390I	CCNGG	2 cut(s)	242, 427
BmeT110I	CYCGRG	2 cut(s)	401, 443
BmiI	GGNNCC	3 cut(s)	190, 205, 528
BmrFI	CCNGG	2 cut(s)	242, 427
BmsI	GCATC	1 cut(s)	472
Bpu10I	CCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	67
BpuMI	CCSGG	1 cut(s)	427
BsaHI	GRCGYC	2 cut(s)	440, 449
BsaJI	CCNNGG	4 cut(s)	12, 240, 283, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 324
Bse118I	RCCGGY	5 cut(s)	185, 349, 455, 488, 565
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	4 cut(s)	12, 240, 283, 444
BseGI	GGATG	1 cut(s)	594
BseLI	CCNNNNNNNGG	2 cut(s)	241, 324
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	5 cut(s)	17, 288, 406, 463, 517
BseYI	CCCAGC	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	245
BshNI	GGYRCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	2 cut(s)	401, 443
BsiSI	CCGG	8 cut(s)	186, 201, 350, 426, 456, 489, 530, 566
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	241, 324
BsmAI	GTCTC	1 cut(s)	439
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	245
BsoBI	CYCGRG	2 cut(s)	401, 443
Bsp1286I	GDGCHC	3 cut(s)	53, 291, 402
Bsp1407I	TGTACA	1 cut(s)	549
Bsp19I	CCATGG	1 cut(s)	12
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	3 cut(s)	190, 205, 528
BspT107I	GGYRCC	1 cut(s)	188
BsrFI	RCCGGY	5 cut(s)	185, 349, 455, 488, 565
BsrGI	TGTACA	1 cut(s)	549
BssAI	RCCGGY	5 cut(s)	185, 349, 455, 488, 565
BssECI	CCNNGG	4 cut(s)	12, 240, 283, 444
BssNI	GRCGYC	2 cut(s)	440, 449
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	22
BstACI	GRCGYC	2 cut(s)	440, 449
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstAUI	TGTACA	1 cut(s)	549
BstC8I	GCNNGC	4 cut(s)	187, 287, 291, 457
BstDEI	CTNAG	2 cut(s)	221, 597
BstDSI	CCRYGG	2 cut(s)	12, 283
BstF5I	GGATG	1 cut(s)	594
BstFNI	CGCG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstMAI	GTCTC	1 cut(s)	439
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	2 cut(s)	240, 425
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	5 cut(s)	17, 288, 406, 463, 517
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	2 cut(s)	12, 283
BtgZI	GCGATG	2 cut(s)	181, 304
BtsCI	GGATG	1 cut(s)	594
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	4 cut(s)	187, 287, 291, 457
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	5 cut(s)	185, 349, 455, 488, 565
Cfr42I	CCGCGG	1 cut(s)	286
CseI	GACGC	3 cut(s)	411, 438, 448
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	4 cut(s)	13, 169, 373, 469
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	221, 597
EaeI	YGGCCR	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	442
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	3 cut(s)	53, 291, 402
Eco53kI	GAGCTC	1 cut(s)	51
Eco88I	CYCGRG	2 cut(s)	401, 443
EcoICRI	GAGCTC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	3 cut(s)	53, 291, 402
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	4 cut(s)	16, 172, 376, 472
FaiI	YATR	4 cut(s)	14, 170, 374, 470
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	4 cut(s)	12, 168, 372, 468
FauI	CCCGC	3 cut(s)	244, 278, 322
Fnu4HI	GCNGC	8 cut(s)	6, 90, 246, 302, 420, 477, 486, 506
FriOI	GRGCYC	3 cut(s)	53, 291, 402
Fsp4HI	GCNGC	8 cut(s)	6, 90, 246, 302, 420, 477, 486, 506
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	8 cut(s)	6, 90, 246, 302, 420, 477, 486, 506
GsaI	CCCAGC	1 cut(s)	253
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	8 cut(s)	186, 201, 350, 426, 456, 489, 530, 566
HgaI	GACGC	3 cut(s)	411, 438, 448
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	2 cut(s)	440, 449
Hin1II	CATG	4 cut(s)	16, 172, 376, 472
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	535
HpaII	CCGG	8 cut(s)	186, 201, 350, 426, 456, 489, 530, 566
HphI	GGTGA	1 cut(s)	503
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	436
Hpy99I	CGWCG	2 cut(s)	398, 442
HpyAV	CCTTC	2 cut(s)	186, 266
HpyCH4III	ACNGT	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	221, 597
Hsp92I	GRCGYC	2 cut(s)	440, 449
Hsp92II	CATG	4 cut(s)	16, 172, 376, 472
HspAI	GCGC	1 cut(s)	225
KroI	GCCGGC	2 cut(s)	185, 455
KroNI	GCCGGC	2 cut(s)	187, 457
KspI	CCGCGG	1 cut(s)	286
LmnI	GCTCC	3 cut(s)	56, 203, 532
Lsp1109I	GCAGC	5 cut(s)	17, 288, 406, 463, 517
LweI	GCATC	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	491
MboII	GAAGA	1 cut(s)	202
MhlI	GDGCHC	3 cut(s)	53, 291, 402
MmeI	TCCRAC	3 cut(s)	189, 255, 370
MreI	CGCCGGCG	1 cut(s)	455
MroNI	GCCGGC	2 cut(s)	185, 455
MspA1I	CMGCKG	2 cut(s)	285, 508
MspI	CCGG	8 cut(s)	186, 201, 350, 426, 456, 489, 530, 566
MspR9I	CCNGG	2 cut(s)	242, 427
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	285
NaeI	GCCGGC	2 cut(s)	187, 457
NciI	CCSGG	1 cut(s)	427
NcoI	CCATGG	1 cut(s)	12
NgoMIV	GCCGGC	2 cut(s)	185, 455
NlaIII	CATG	4 cut(s)	16, 172, 376, 472
NlaIV	GGNNCC	3 cut(s)	190, 205, 528
NmuCI	GTSAC	1 cut(s)	491
NspI	RCATGY	1 cut(s)	172
PciI	ACATGT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 446
PdiI	GCCGGC	2 cut(s)	187, 457
PfeI	GAWTC	1 cut(s)	535
PflMI	CCANNNNNTGG	1 cut(s)	324
PkrI	GCNGC	8 cut(s)	7, 91, 247, 303, 421, 478, 487, 507
PscI	ACATGT	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	3 cut(s)	190, 205, 528
PvuII	CAGCTG	1 cut(s)	508
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SacI	GAGCTC	1 cut(s)	53
SacII	CCGCGG	1 cut(s)	286
SatI	GCNGC	8 cut(s)	6, 90, 246, 302, 420, 477, 486, 506
ScrFI	CCNGG	2 cut(s)	242, 427
SduI	GDGCHC	3 cut(s)	53, 291, 402
SetI	ASST	8 cut(s)	53, 84, 104, 126, 136, 154, 510, 596
SfaNI	GCATC	1 cut(s)	472
Sfr303I	CCGCGG	1 cut(s)	286
SgrAI	CRCCGGYG	2 cut(s)	455, 488
SgrBI	CCGCGG	1 cut(s)	286
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	240, 425
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	437
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	3 cut(s)	92, 248, 488
TfiI	GAWTC	1 cut(s)	535
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	5 cut(s)	5, 301, 419, 476, 505
Tsp45I	GTSAC	1 cut(s)	491
TspRI	CASTG	1 cut(s)	27
Van91I	CCANNNNNTGG	1 cut(s)	324
XceI	RCATGY	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.