Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Forward (+)

59416254 .. 59417185

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004444

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGACTCTAGAGACTACTATGCTTCCTTGCAATAACCGCCTTGGGCGCCCATATATTTTCCCCGTTGAGTCCCAAATGTCAAAGAAACTGTTTAGAAAATCCACTCAAGGTATAGGTACAAATGGCTTCAAGCTTAGAGACCTACCTATAAGCTTCACTAGCTTCAAATCCATGGTGAAGACCGAAACTTCCGGTTCCCCAAGCAGGACTGCGGCCATTACCGGTACCATCCTGACCACCTTGATCTCTTCAGATCCTGCTTTGAGTGCACAACGAGTTGCAGATGTCGCAGAAGGTGATAATCGTGCCCTGGCACTCCTACTACCTATTGCTACCCACGCCCTAGCGGATGGGAGTGCCCTAGTAACCCAAGGGCTTGGGGTGGTCTTATTCATGGCCAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

137

Amino Acids

14.47

Weight (kDa)

9.91

Isoelectric Point (pI)

26.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	2 cut(s)	48, 227
AciI	CCGC	3 cut(s)	40, 215, 350
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	2 cut(s)	216, 399
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	121, 229
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgeI	ACCGGT	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	133, 169
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	3 cut(s)	136, 156, 165
AluI	AGCT	3 cut(s)	136, 156, 165
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	2 cut(s)	8, 135
Alw44I	GTGCAC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	216, 399
ApaLI	GTGCAC	1 cut(s)	270
AsiGI	ACCGGT	1 cut(s)	224
Asp718I	GGTACC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	190, 311
BaeGI	GKGCMC	3 cut(s)	274, 313, 364
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	2 cut(s)	48, 227
BbsI	GAAGAC	2 cut(s)	11, 188
Bbv12I	GWGCWC	1 cut(s)	274
BccI	CCATC	2 cut(s)	239, 347
BciT130I	CCWGG	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	8, 135
BfaI	CTAG	4 cut(s)	11, 162, 347, 365
BfoI	RGCGCY	1 cut(s)	52
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	314
BmiI	GGNNCC	3 cut(s)	50, 199, 229
BmrFI	CCNGG	1 cut(s)	314
BpiI	GAAGAC	2 cut(s)	11, 188
BpuEI	CTTGAG	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	4 cut(s)	43, 174, 312, 373
BsaWI	WCCGGW	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	4 cut(s)	43, 174, 312, 373
BseGI	GGATG	2 cut(s)	231, 358
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseSI	GKGCMC	3 cut(s)	274, 313, 364
BshFI	GGCC	2 cut(s)	218, 401
BshNI	GGYRCC	2 cut(s)	48, 227
BshTI	ACCGGT	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	195, 225
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	8, 135
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	218, 401
Bso31I	GGTCTC	1 cut(s)	135
Bsp1286I	GDGCHC	3 cut(s)	274, 313, 364
Bsp143I	GATC	2 cut(s)	246, 256
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	3 cut(s)	40, 215, 350
BspANI	GGCC	2 cut(s)	218, 401
BspLI	GGNNCC	3 cut(s)	50, 199, 229
BspPI	GGATC	1 cut(s)	251
BspT107I	GGYRCC	2 cut(s)	48, 227
BspTNI	GGTCTC	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	4 cut(s)	43, 174, 312, 373
BssMI	GATC	2 cut(s)	246, 256
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	3 cut(s)	43, 174, 373
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	256
BstACI	GRCGYC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	231, 358
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	2 cut(s)	249, 259
BstMAI	GTCTC	2 cut(s)	8, 135
BstMBI	GATC	2 cut(s)	246, 256
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 48, 162, 269, 290, 341
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstSLI	GKGCMC	3 cut(s)	274, 313, 364
BstV2I	GAAGAC	2 cut(s)	11, 188
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	218, 401
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	231, 358
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	120, 228
CspAI	ACCGGT	1 cut(s)	224
CviAII	CATG	2 cut(s)	175, 397
CviJI	RGCY	7 cut(s)	129, 136, 156, 165, 218, 379, 401
CviKI_1	RGCY	7 cut(s)	129, 136, 156, 165, 218, 379, 401
CviQI	GTAC	2 cut(s)	120, 228
DdeI	CTNAG	1 cut(s)	137
DinI	GGCGCC	1 cut(s)	50
DpnI	GATC	2 cut(s)	248, 258
DpnII	GATC	2 cut(s)	246, 256
EaeI	YGGCCR	2 cut(s)	216, 399
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco130I	CCWWGG	3 cut(s)	43, 174, 373
Eco31I	GGTCTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	3 cut(s)	43, 174, 373
EgeI	GGCGCC	1 cut(s)	50
EheI	GGCGCC	1 cut(s)	50
ErhI	CCWWGG	3 cut(s)	43, 174, 373
FaeI	CATG	2 cut(s)	178, 400
FaiI	YATR	7 cut(s)	23, 55, 57, 116, 152, 176, 398
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	174, 396
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	2 cut(s)	218, 365
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	4 cut(s)	11, 162, 347, 365
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	2 cut(s)	218, 401
HapII	CCGG	2 cut(s)	195, 225
HhaI	GCGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	2 cut(s)	178, 400
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HindIII	AAGCTT	2 cut(s)	134, 154
HinfI	GANTC	2 cut(s)	7, 71
HpaII	CCGG	2 cut(s)	195, 225
HphI	GGTGA	2 cut(s)	190, 311
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	11, 235
Hpy8I	GTNNAC	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	3 cut(s)	33, 272, 284
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 48, 162, 269, 290, 341
HpyF3I	CTNAG	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	178, 400
HspAI	GCGC	1 cut(s)	49
KasI	GGCGCC	1 cut(s)	48
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	246, 256
LpnPI	CCDG	7 cut(s)	193, 208, 238, 248, 273, 299, 326
MaeI	CTAG	4 cut(s)	11, 162, 347, 365
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	248, 258
MboI	GATC	2 cut(s)	246, 256
MboII	GAAGA	3 cut(s)	16, 193, 243
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	3 cut(s)	274, 313, 364
MlsI	TGGCCA	1 cut(s)	401
MluNI	TGGCCA	1 cut(s)	401
Mly113I	GGCGCC	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	80
Mox20I	TGGCCA	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	401
MspI	CCGG	2 cut(s)	195, 225
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	6 cut(s)	39, 48, 162, 269, 290, 341
NarI	GGCGCC	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	246, 256
NlaIII	CATG	2 cut(s)	178, 400
NlaIV	GGNNCC	3 cut(s)	50, 199, 229
PinAI	ACCGGT	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	79
PluTI	GGCGCC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	3 cut(s)	50, 199, 229
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	121, 229
RsaNI	GTAC	2 cut(s)	120, 228
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	246, 256
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	3 cut(s)	274, 313, 364
SfoI	GGCGCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
SsiI	CCGC	3 cut(s)	40, 215, 350
SspDI	GGCGCC	1 cut(s)	48
SspMI	CTAG	4 cut(s)	11, 162, 347, 365
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	3 cut(s)	43, 174, 373
TaaI	ACNGT	1 cut(s)	93
TaqII	GACCGA	1 cut(s)	200
TauI	GCSGC	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	17, 385
VneI	GTGCAC	1 cut(s)	270
XbaI	TCTAGA	1 cut(s)	10
XspI	CTAG	4 cut(s)	11, 162, 347, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.