Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Reverse (-)

25384299 .. 25385428

Gene Structure 1130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G239600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCAGCAACCATGGCTACAATGGCAATAATCAATGCCAAGTGCATGAGCACCAACACCCCCAAGGTCGTCACCAAGCTAACCACAAAACCCACCTTCCTTCTCTCACTTCAAAACCTCCCAAAAGGCCTAACCTCCTCAAAACCAGTTGAAATTCCCAGCATCAACATGTCACCTTTGGCCAGCACAGCAATTGCTGGAGCCATCTTCTCCACCTTGAGCTCCTCTGACCCTGCCATGGCTGCTCAACAGATTGCCCAAATAGCCGAAGGGGACAACCGTGGCCTTGCTCTTCTGCTACCCCTCATTCCAGCCATAGCTTGGGTTCTCTTCAACATCTTCCAGCCAGCCCTGAACCAGATCAACCGCATGCAGAACAAGGGGGTCATCGTGGGGCTTGGGCTTGGTGGGTTGGCTGCATCCGGATTCATTTCAACACCACTTGCCTCAGCCAGTGAAATTGCCATGATTGCTGCTGATGCTCCTGCTAATGACAACAGGGGCCAGCTCTTGCTGATTGTGGTTGCTCCTGCCATTGTTTGGGTCCTGTACAACATTCTACAACCGGCTTTGAACCAAATCAACAAGATGAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

200

Amino Acids

20.76

Weight (kDa)

9.73

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	321, 540
AccIII	TCCGGA	1 cut(s)	422
AciI	CCGC	1 cut(s)	367
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	153
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	3 cut(s)	238, 321, 540
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	5 cut(s)	113, 152, 334, 435, 574
AluBI	AGCT	4 cut(s)	79, 222, 320, 508
AluI	AGCT	4 cut(s)	79, 222, 320, 508
Alw21I	GWGCWC	2 cut(s)	53, 224
Aor13HI	TCCGGA	1 cut(s)	422
AoxI	GGCC	4 cut(s)	127, 180, 283, 502
ApeKI	GCWGC	4 cut(s)	5, 242, 416, 473
ApoI	RAATTY	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	502, 544
AsuHPI	GGTGA	2 cut(s)	64, 165
AvaII	GGWCC	1 cut(s)	544
BalI	TGGCCA	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	53, 224
BbvCI	CCTCAGC	1 cut(s)	448
BbvI	GCAGC	4 cut(s)	17, 229, 403, 460
BccI	CCATC	1 cut(s)	212
BisI	GCNGC	4 cut(s)	6, 243, 417, 474
BlsI	GCNGC	4 cut(s)	7, 244, 418, 475
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	502, 544
BmiI	GGNNCC	3 cut(s)	202, 503, 545
BmsI	GCATC	3 cut(s)	171, 428, 469
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	238
BsaJI	CCNNGG	4 cut(s)	12, 63, 237, 280
BsaWI	WCCGGW	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 321, 540
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	2 cut(s)	146, 453
BseAI	TCCGGA	1 cut(s)	422
BseDI	CCNNGG	4 cut(s)	12, 63, 237, 280
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	3 cut(s)	238, 321, 540
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	146, 453
BseRI	GAGGAG	2 cut(s)	127, 214
BseXI	GCAGC	4 cut(s)	17, 229, 403, 460
BseYI	CCCAGC	1 cut(s)	158
BshFI	GGCC	4 cut(s)	129, 182, 285, 504
BsiHKAI	GWGCWC	2 cut(s)	53, 224
BsiSI	CCGG	2 cut(s)	423, 566
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	3 cut(s)	238, 321, 540
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	4 cut(s)	129, 182, 285, 504
Bsp1286I	GDGCHC	2 cut(s)	53, 224
Bsp13I	TCCGGA	1 cut(s)	422
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	1 cut(s)	360
Bsp19I	CCATGG	2 cut(s)	12, 237
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	4 cut(s)	129, 182, 285, 504
BspCNI	CTCAG	1 cut(s)	461
BspEI	TCCGGA	1 cut(s)	422
BspLI	GGNNCC	3 cut(s)	202, 503, 545
BspQI	GCTCTTC	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	565
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	146, 453
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	4 cut(s)	12, 63, 237, 280
BssMI	GATC	1 cut(s)	360
BssT1I	CCWWGG	3 cut(s)	12, 63, 237
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	2 cut(s)	297, 335
BstAUI	TGTACA	1 cut(s)	549
BstC8I	GCNNGC	4 cut(s)	184, 348, 371, 506
BstDEI	CTNAG	2 cut(s)	448, 597
BstDSI	CCRYGG	3 cut(s)	12, 237, 280
BstF5I	GGATG	1 cut(s)	419
BstKTI	GATC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 23, 188, 242, 263, 470, 479
BstNSI	RCATGY	2 cut(s)	172, 373
BstV1I	GCAGC	4 cut(s)	17, 229, 403, 460
BsuRI	GGCC	4 cut(s)	129, 182, 285, 504
BtgI	CCRYGG	3 cut(s)	12, 237, 280
BtsCI	GGATG	1 cut(s)	419
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	4 cut(s)	184, 348, 371, 506
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	502, 544
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	6 cut(s)	13, 46, 169, 238, 370, 466
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	448, 597
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	297, 335
EarI	CTCTTC	2 cut(s)	297, 335
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	3 cut(s)	12, 63, 237
Eco147I	AGGCCT	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	544
Eco53kI	GAGCTC	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	544
EcoT14I	CCWWGG	3 cut(s)	12, 63, 237
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	3 cut(s)	12, 63, 237
FaeI	CATG	6 cut(s)	16, 49, 172, 241, 373, 469
FaiI	YATR	7 cut(s)	14, 47, 170, 239, 317, 371, 467
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	6 cut(s)	12, 45, 168, 237, 369, 465
Fnu4HI	GCNGC	4 cut(s)	6, 243, 417, 474
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	4 cut(s)	6, 243, 417, 474
GluI	GCNGC	4 cut(s)	6, 243, 417, 474
GsaI	CCCAGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	4 cut(s)	129, 182, 285, 504
HapII	CCGG	2 cut(s)	423, 566
Hin1II	CATG	6 cut(s)	16, 49, 172, 241, 373, 469
HinfI	GANTC	1 cut(s)	426
HpaII	CCGG	2 cut(s)	423, 566
HphI	GGTGA	2 cut(s)	64, 165
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	423
HpyAV	CCTTC	3 cut(s)	106, 110, 263
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	45, 373, 419
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 23, 188, 242, 263, 470, 479
HpyF3I	CTNAG	2 cut(s)	448, 597
Hsp92II	CATG	6 cut(s)	16, 49, 172, 241, 373, 469
Kpn2I	TCCGGA	1 cut(s)	422
Kzo9I	GATC	1 cut(s)	360
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	4 cut(s)	200, 227, 487, 532
Lsp1109I	GCAGC	4 cut(s)	17, 229, 403, 460
LweI	GCATC	3 cut(s)	171, 428, 469
MaeIII	GTNAC	2 cut(s)	70, 171
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MboII	GAAGA	4 cut(s)	199, 284, 322, 331
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	2 cut(s)	53, 224
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	3 cut(s)	153, 192, 459
MluNI	TGGCCA	1 cut(s)	182
MnlI	CCTC	7 cut(s)	128, 145, 148, 235, 314, 457, 585
Mox20I	TGGCCA	1 cut(s)	182
MroI	TCCGGA	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	182
MspI	CCGG	2 cut(s)	423, 566
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	7 cut(s)	14, 23, 188, 242, 263, 470, 479
NcoI	CCATGG	2 cut(s)	12, 237
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	6 cut(s)	16, 49, 172, 241, 373, 469
NlaIV	GGNNCC	3 cut(s)	202, 503, 545
NmuCI	GTSAC	2 cut(s)	70, 171
NspI	RCATGY	2 cut(s)	172, 373
PaeI	GCATGC	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	129
PciI	ACATGT	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	426
PflMI	CCANNNNNTGG	2 cut(s)	321, 540
PkrI	GCNGC	4 cut(s)	7, 244, 418, 475
PpuMI	RGGWCCY	1 cut(s)	544
PscI	ACATGT	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	544
PspFI	CCCAGC	1 cut(s)	158
PspN4I	GGNNCC	3 cut(s)	202, 503, 545
PspPI	GGNCC	2 cut(s)	502, 544
PspPPI	RGGWCCY	1 cut(s)	544
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	297
SatI	GCNGC	4 cut(s)	6, 243, 417, 474
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	2 cut(s)	502, 544
SduI	GDGCHC	2 cut(s)	53, 224
SfaNI	GCATC	3 cut(s)	171, 428, 469
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	3 cut(s)	153, 192, 459
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	367
SstI	GAGCTC	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	129
StyI	CCWWGG	3 cut(s)	12, 63, 237
TaaI	ACNGT	1 cut(s)	281
TasI	AATT	3 cut(s)	153, 192, 459
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	1 cut(s)	426
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	2 cut(s)	70, 171
TseI	GCWGC	4 cut(s)	5, 242, 416, 473
Tsp45I	GTSAC	2 cut(s)	70, 171
TspDTI	ATGAA	1 cut(s)	418
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	2 cut(s)	321, 540
VpaK11BI	GGWCC	1 cut(s)	544
XapI	RAATTY	1 cut(s)	153
XceI	RCATGY	2 cut(s)	172, 373
XcmI	CCANNNNNNNNNTGG	2 cut(s)	19, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.