Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Reverse (-)

53619069 .. 53620504

Gene Structure 1436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G027190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCAGCAACAATGGCTACTACAATGGCAATAATGAACGCCAAGTGCTTAAGCACCACCACCAACTCCTCCTCCAAACTCATCCCCAACCTCAAGCCAATCACCACCACAAAACCTATCTCCCTCCTCTCCATCCAAAACCTTCCAAAGGGTCTAACCAGCTCATCAGCCCTAGCCGGAGCCATCTTCGCCACCATAAGCGCCTCCGAACCCGCCTTGGCTGCTCAGCAAATCGCTCAAATCGCCGAAGGCGACAACCGTGGCCTTGCCCTCCTCCTACCCATCATTCCCGCCATCGCTTGGGTCCTCTTTAACATCTTCCAGCCGGCTCTCAACCAAATCAACCGCATGGTCAACAAGAGCGTCATCATTGGTCTAGGGCTTGGCGGTCTCGCCGCTTCCGGGTTCGTGTCCACTCCTGAAGCTTCTGCCAATGAAATGGCCATGATTGGTGAAGCAGCTGCAAAGGCCGGTGACAGCAGGGGACAGCTCCTCCTCATAGTGGTGGCTCCGGCTATTCTTTGGGTGCTCTACAACATTCTACAACCGGCTTTGAACCAGCTTAACAAGATGAGGTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

194

Amino Acids

20.14

Weight (kDa)

9.52

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbY	PF06298	85 - 117	1.1e-14	Photosystem II protein Y (PsbY)
PsbY	PF06298	159 - 191	5.6e-11	Photosystem II protein Y (PsbY)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	300
AciI	CCGC	5 cut(s)	213, 291, 346, 387, 396
AcoI	YGGCCR	1 cut(s)	441
AcuI	CTGAAG	1 cut(s)	441
AfiI	CCNNNNNNNGG	4 cut(s)	148, 300, 402, 502
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	556
AluBI	AGCT	5 cut(s)	162, 425, 461, 490, 562
AluI	AGCT	5 cut(s)	162, 425, 461, 490, 562
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	395
AoxI	GGCC	3 cut(s)	262, 441, 468
ApeKI	GCWGC	4 cut(s)	5, 221, 458, 461
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	3 cut(s)	94, 464, 485
AvaII	GGWCC	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	4 cut(s)	17, 208, 448, 470
BccI	CCATC	4 cut(s)	140, 191, 290, 302
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	173, 377
BfoI	RGCGCY	1 cut(s)	204
BfrI	CTTAAG	1 cut(s)	49
BisI	GCNGC	5 cut(s)	6, 222, 396, 459, 462
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	5 cut(s)	7, 223, 397, 460, 463
Bme1390I	CCNGG	1 cut(s)	403
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	3 cut(s)	181, 305, 510
BmrFI	CCNGG	1 cut(s)	403
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	403
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	216, 259
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 477, 507
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 300, 402, 502
Bse118I	RCCGGY	3 cut(s)	325, 470, 547
BseDI	CCNNGG	2 cut(s)	216, 259
BseGI	GGATG	2 cut(s)	81, 132
BseLI	CCNNNNNNNGG	4 cut(s)	148, 300, 402, 502
BseMII	CTCAG	1 cut(s)	239
BseRI	GAGGAG	6 cut(s)	58, 61, 116, 263, 482, 485
BseXI	GCAGC	4 cut(s)	17, 208, 448, 470
BshFI	GGCC	3 cut(s)	264, 443, 470
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	6 cut(s)	177, 326, 402, 471, 512, 548
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	4 cut(s)	148, 300, 402, 502
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	3 cut(s)	264, 443, 470
Bso31I	GGTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	5 cut(s)	213, 291, 346, 387, 396
BspANI	GGCC	3 cut(s)	264, 443, 470
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	181, 305, 510
BspTI	CTTAAG	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	395
BsrFI	RCCGGY	3 cut(s)	325, 470, 547
BssAI	RCCGGY	3 cut(s)	325, 470, 547
BssECI	CCNNGG	2 cut(s)	216, 259
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	260
BstAFI	CTTAAG	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	81, 132
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstMAI	GTCTC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 188, 221, 242, 467
BstSCI	CCNGG	1 cut(s)	401
BstV1I	GCAGC	4 cut(s)	17, 208, 448, 470
BstXI	CCANNNNNNTGG	1 cut(s)	439
BsuRI	GGCC	3 cut(s)	264, 443, 470
BtgI	CCRYGG	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	81, 132
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	3 cut(s)	325, 470, 547
Cfr13I	GGNCC	1 cut(s)	304
CseI	GACGC	1 cut(s)	352
CviAII	CATG	2 cut(s)	349, 445
DdeI	CTNAG	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	441
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	352, 448
FaiI	YATR	4 cut(s)	197, 350, 446, 500
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	2 cut(s)	348, 444
FauI	CCCGC	2 cut(s)	220, 298
Fnu4HI	GCNGC	5 cut(s)	6, 222, 396, 459, 462
FokI	GGATG	2 cut(s)	68, 119
Fsp4HI	GCNGC	5 cut(s)	6, 222, 396, 459, 462
FspBI	CTAG	2 cut(s)	173, 377
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	5 cut(s)	6, 222, 396, 459, 462
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	264, 443, 470
HapII	CCGG	6 cut(s)	177, 326, 402, 471, 512, 548
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	352, 448
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	423
HpaII	CCGG	6 cut(s)	177, 326, 402, 471, 512, 548
HphI	GGTGA	3 cut(s)	94, 464, 485
Hpy166II	GTNNAC	2 cut(s)	355, 414
Hpy188I	TCNGA	2 cut(s)	208, 580
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	2 cut(s)	355, 414
HpyAV	CCTTC	2 cut(s)	152, 242
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 188, 221, 242, 467
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	352, 448
HspAI	GCGC	1 cut(s)	201
KroI	GCCGGC	1 cut(s)	325
KroNI	GCCGGC	1 cut(s)	327
LmnI	GCTCC	3 cut(s)	179, 495, 514
Lsp1109I	GCAGC	4 cut(s)	17, 208, 448, 470
MaeI	CTAG	2 cut(s)	173, 377
MaeIII	GTNAC	1 cut(s)	473
MboII	GAAGA	2 cut(s)	178, 310
MhlI	GDGCHC	1 cut(s)	531
MlsI	TGGCCA	1 cut(s)	443
MluNI	TGGCCA	1 cut(s)	443
Mox20I	TGGCCA	1 cut(s)	443
MroNI	GCCGGC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	3 cut(s)	50, 312, 564
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	461
MspCI	CTTAAG	1 cut(s)	49
MspI	CCGG	6 cut(s)	177, 326, 402, 471, 512, 548
MspR9I	CCNGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	5 cut(s)	14, 188, 221, 242, 467
NaeI	GCCGGC	1 cut(s)	327
NciI	CCSGG	1 cut(s)	403
NgoMIV	GCCGGC	1 cut(s)	325
NlaIII	CATG	2 cut(s)	352, 448
NlaIV	GGNNCC	3 cut(s)	181, 305, 510
NmuCI	GTSAC	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	327
PflMI	CCANNNNNTGG	1 cut(s)	300
PkrI	GCNGC	5 cut(s)	7, 223, 397, 460, 463
PpuMI	RGGWCCY	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	181, 305, 510
PspPI	GGNCC	1 cut(s)	304
PspPPI	RGGWCCY	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	3 cut(s)	50, 312, 564
SatI	GCNGC	5 cut(s)	6, 222, 396, 459, 462
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	403
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	9 cut(s)	93, 118, 144, 164, 427, 463, 492, 564, 578
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	2 cut(s)	49, 92
SmoI	CTYRAG	2 cut(s)	49, 92
SsiI	CCGC	5 cut(s)	213, 291, 346, 387, 396
SspMI	CTAG	2 cut(s)	173, 377
StyD4I	CCNGG	1 cut(s)	401
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	260
TauI	GCSGC	1 cut(s)	398
Tru1I	TTAA	3 cut(s)	50, 312, 564
Tru9I	TTAA	3 cut(s)	50, 312, 564
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	4 cut(s)	5, 221, 458, 461
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	2 cut(s)	50, 450
Van91I	CCANNNNNTGG	1 cut(s)	300
Vha464I	CTTAAG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	304
XagI	CCTNNNNNAGG	1 cut(s)	146
XspI	CTAG	2 cut(s)	173, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.