Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Reverse (-)

26994104 .. 26994685

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g25080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCAGCAACAATGGCTACTACAATGGCACTAATGAACGCCAAGTGCTTAAGCACCACCACCAACTCAGCCAAACTCCCCAACCTCAAACCAATCACCCCCACAAAACCCATCTCCCTCCTCTCCATCCAAAACCTCCCCAAGGGTACTCTAACCAGCTCAGCCCTAGCTGGAGCCATCTTCGCCACCATAAGCGCCTCCGAACCGGCCTTGGCTGCTCAACAAATCGCTCAAATCGCCGAAGGTGACAACCGTGGCCTTGCCCTCCTCCTCCCCATCATTCCCGCCATTGCTTGGGTCCTCTTCAACATCTTCCAGCCTGCTCTCAACCAAATCAACCGCATGGTCAACAAGAGCGTCATCGTTGGTCTAGGGCTGGGCGGACTTGCAGCTTCAGGGTTCGTGTCCACTCCTGAAGCTTCTGCTAATGAAATGGCCGTGCTTGGTGAAGCAGCTGCAAAGGCCGGTGACAGCAGGGGACAGCTCCTCCTCATTGTGGTGGCTCCGGCTATTCTTTGGGTGCTTTACAATATTCTACAACCGGCTTTGAACCAGCTTAACAAGATGAGGTCTCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

194

Amino Acids

20.0

Weight (kDa)

9.52

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbY	PF06298	83 - 115	1e-14	Photosystem II protein Y (PsbY)
PsbY	PF06298	157 - 189	5.6e-11	Photosystem II protein Y (PsbY)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	294
AciI	CCGC	3 cut(s)	285, 340, 381
AcoI	YGGCCR	1 cut(s)	435
AcuI	CTGAAG	2 cut(s)	378, 435
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	3 cut(s)	142, 294, 496
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	307, 550
AluBI	AGCT	7 cut(s)	159, 170, 392, 419, 455, 484, 556
AluI	AGCT	7 cut(s)	159, 170, 392, 419, 455, 484, 556
Alw26I	GTCTC	1 cut(s)	576
AoxI	GGCC	4 cut(s)	207, 256, 435, 462
ApeKI	GCWGC	5 cut(s)	5, 215, 389, 452, 455
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	4 cut(s)	88, 257, 458, 479
AvaII	GGWCC	1 cut(s)	298
BbvI	GCAGC	5 cut(s)	17, 202, 401, 442, 464
BccI	CCATC	4 cut(s)	119, 134, 185, 284
BceAI	ACGGC	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	576
BfaI	CTAG	2 cut(s)	167, 371
BfoI	RGCGCY	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	49
BisI	GCNGC	5 cut(s)	6, 216, 390, 453, 456
BlpI	GCTNAGC	1 cut(s)	160
BlsI	GCNGC	5 cut(s)	7, 217, 391, 454, 457
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	3 cut(s)	175, 299, 504
BpmI	CTGGAG	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	576
BsaJI	CCNNGG	3 cut(s)	141, 210, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 294, 496
Bse118I	RCCGGY	3 cut(s)	205, 464, 541
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	141, 210, 253
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	3 cut(s)	142, 294, 496
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	81, 174
BseRI	GAGGAG	5 cut(s)	110, 257, 260, 476, 479
BseXI	GCAGC	5 cut(s)	17, 202, 401, 442, 464
BseYI	CCCAGC	1 cut(s)	376
BshFI	GGCC	4 cut(s)	209, 258, 437, 464
BsiSI	CCGG	4 cut(s)	206, 465, 506, 542
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	3 cut(s)	142, 294, 496
BsmAI	GTCTC	1 cut(s)	576
BsmFI	GGGAC	1 cut(s)	492
BsnI	GGCC	4 cut(s)	209, 258, 437, 464
Bso31I	GGTCTC	1 cut(s)	576
Bsp1720I	GCTNAGC	1 cut(s)	160
BspACI	CCGC	3 cut(s)	285, 340, 381
BspANI	GGCC	4 cut(s)	209, 258, 437, 464
BspCNI	CTCAG	2 cut(s)	80, 173
BspLI	GGNNCC	3 cut(s)	175, 299, 504
BspTI	CTTAAG	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	576
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	3 cut(s)	205, 464, 541
BssAI	RCCGGY	3 cut(s)	205, 464, 541
BssECI	CCNNGG	3 cut(s)	141, 210, 253
BssT1I	CCWWGG	2 cut(s)	141, 210
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	308
BstAFI	CTTAAG	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	3 cut(s)	67, 160, 573
BstDSI	CCRYGG	1 cut(s)	253
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstMAI	GTCTC	1 cut(s)	576
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 182, 215, 236, 461
BstV1I	GCAGC	5 cut(s)	17, 202, 401, 442, 464
BsuRI	GGCC	4 cut(s)	209, 258, 437, 464
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	321
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	3 cut(s)	205, 464, 541
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	1 cut(s)	343
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	3 cut(s)	67, 160, 573
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
EciI	GGCGGA	1 cut(s)	396
Eco130I	CCWWGG	2 cut(s)	141, 210
Eco31I	GGTCTC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	2 cut(s)	378, 435
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	141, 210
ErhI	CCWWGG	2 cut(s)	141, 210
FaeI	CATG	1 cut(s)	346
FaiI	YATR	2 cut(s)	191, 344
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	1 cut(s)	342
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	5 cut(s)	6, 216, 390, 453, 456
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	5 cut(s)	6, 216, 390, 453, 456
FspBI	CTAG	2 cut(s)	167, 371
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	5 cut(s)	6, 216, 390, 453, 456
GsaI	CCCAGC	1 cut(s)	380
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	4 cut(s)	209, 258, 437, 464
HapII	CCGG	4 cut(s)	206, 465, 506, 542
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	417
HpaII	CCGG	4 cut(s)	206, 465, 506, 542
HphI	GGTGA	4 cut(s)	88, 257, 458, 479
Hpy166II	GTNNAC	2 cut(s)	349, 408
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	413, 575
Hpy8I	GTNNAC	2 cut(s)	349, 408
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	389, 458
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 182, 215, 236, 461
HpyF3I	CTNAG	3 cut(s)	67, 160, 573
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	1 cut(s)	195
LmnI	GCTCC	3 cut(s)	173, 489, 508
Lsp1109I	GCAGC	5 cut(s)	17, 202, 401, 442, 464
MaeI	CTAG	2 cut(s)	167, 371
MaeIII	GTNAC	2 cut(s)	245, 467
MboII	GAAGA	3 cut(s)	172, 295, 304
MseI	TTAA	2 cut(s)	50, 558
MslI	CAYNNNNRTG	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	455
MspCI	CTTAAG	1 cut(s)	49
MspI	CCGG	4 cut(s)	206, 465, 506, 542
MwoI	GCNNNNNNNGC	5 cut(s)	14, 182, 215, 236, 461
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	3 cut(s)	175, 299, 504
NmuCI	GTSAC	2 cut(s)	245, 467
PflMI	CCANNNNNTGG	1 cut(s)	294
PkrI	GCNGC	5 cut(s)	7, 217, 391, 454, 457
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	376
PspN4I	GGNNCC	3 cut(s)	175, 299, 504
PspPI	GGNCC	1 cut(s)	298
PspPPI	RGGWCCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	2 cut(s)	50, 558
SatI	GCNGC	5 cut(s)	6, 216, 390, 453, 456
Sau96I	GGNCC	1 cut(s)	298
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
SsiI	CCGC	3 cut(s)	285, 340, 381
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	2 cut(s)	167, 371
StyI	CCWWGG	2 cut(s)	141, 210
TaaI	ACNGT	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	50, 558
Tru9I	TTAA	2 cut(s)	50, 558
TseFI	GTSAC	2 cut(s)	245, 467
TseI	GCWGC	5 cut(s)	5, 215, 389, 452, 455
Tsp45I	GTSAC	2 cut(s)	245, 467
TspDTI	ATGAA	2 cut(s)	50, 444
Van91I	CCANNNNNTGG	1 cut(s)	294
Vha464I	CTTAAG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	298
XagI	CCTNNNNNAGG	1 cut(s)	140
XspI	CTAG	2 cut(s)	167, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.