Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Forward (+)

57598459 .. 57600704

Gene Structure 2246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCTATGCTCAATGTAAGCAGCTTCACCATCAGGTCATCCAAAAGCAGAAACCCCTGCAAACCAACTATGAAAACAGTATCCCTTCTCTCCCACAAAGACCTACCTATAAGCTTCACTACCTTCAAATCCATGGTGAAGACCGAAACTTCCGGTTCCCCAAGCAGGACTACGGCCATTACTGGTACCATCCTGTCTACCTTGATCTCTTCTGATCCTGCTTTGAGTGCACAACGAGTTGCAGATGTCGCAGAAGGTGATAATCGTGCCTTGGCACTCCTACTACCTATCATTCCAGCTATACTTTGGGTGCTTTACAACATCCTTGAGCCAGCTTTAAACCAAATCAACAGAATGCAAAGTGAAAAGGGTGTCACTAGCCGAAAAAGGAAAGTACCATGCATCCTTGCAATAACGGCCTTGGAGGCTTGGACGCCCGTCATTGAGTCCCAAATGTCAAAGAAACTGAGTAGAAAATCCATCAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

163

Amino Acids

17.8

Weight (kDa)

10.25

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbY	PF06298	87 - 119	8e-14	Photosystem II protein Y (PsbY)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	2 cut(s)	187, 396
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	4 cut(s)	24, 114, 299, 335
AluI	AGCT	4 cut(s)	24, 114, 299, 335
Alw21I	GWGCWC	1 cut(s)	232
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	2 cut(s)	174, 417
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	21
Asp718I	GGTACC	1 cut(s)	185
AsuHPI	GGTGA	3 cut(s)	19, 148, 269
BaeGI	GKGCMC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	3 cut(s)	38, 197, 488
BceAI	ACGGC	2 cut(s)	189, 432
BciVI	GTATCC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	378
BfuI	GTATCC	1 cut(s)	91
BglI	GCCNNNNNGGC	1 cut(s)	425
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	157, 187
BmsI	GCATC	1 cut(s)	411
BoxI	GACNNNNGTC	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	3 cut(s)	132, 270, 420
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	187
BseDI	CCNNGG	3 cut(s)	132, 270, 420
BseGI	GGATG	4 cut(s)	38, 189, 321, 402
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	187
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	33
BshFI	GGCC	2 cut(s)	176, 419
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	2 cut(s)	176, 419
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	204, 214
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	2 cut(s)	176, 419
BspCNI	CTCAG	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	157, 187
BspPI	GGATC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	132, 270, 420
BssMI	GATC	2 cut(s)	204, 214
BssNI	GRCGYC	1 cut(s)	434
BssT1I	CCWWGG	3 cut(s)	132, 270, 420
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	467
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	4 cut(s)	38, 189, 321, 402
BstKTI	GATC	2 cut(s)	207, 217
BstMBI	GATC	2 cut(s)	204, 214
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 248, 416, 425
BstPAI	GACNNNNGTC	1 cut(s)	437
BstSLI	GKGCMC	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	146
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	176, 419
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	4 cut(s)	38, 189, 321, 402
Cac8I	GCNNGC	1 cut(s)	333
CseI	GACGC	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	186, 395
CviAII	CATG	2 cut(s)	133, 399
CviQI	GTAC	2 cut(s)	186, 395
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	2 cut(s)	206, 216
DpnII	GATC	2 cut(s)	204, 214
DraI	TTTAAA	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco130I	CCWWGG	3 cut(s)	132, 270, 420
EcoT14I	CCWWGG	3 cut(s)	132, 270, 420
EcoT22I	ATGCAT	1 cut(s)	404
ErhI	CCWWGG	3 cut(s)	132, 270, 420
FaeI	CATG	2 cut(s)	136, 402
FaiI	YATR	7 cut(s)	8, 71, 110, 134, 302, 400, 490
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	132, 398
FblI	GTMKAC	1 cut(s)	197
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	4 cut(s)	25, 176, 308, 389
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	1 cut(s)	22
HaeIII	GGCC	2 cut(s)	176, 419
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	442
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	2 cut(s)	136, 402
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	3 cut(s)	19, 148, 269
Hpy166II	GTNNAC	2 cut(s)	198, 230
Hpy188I	TCNGA	1 cut(s)	214
Hpy8I	GTNNAC	2 cut(s)	198, 230
HpyAV	CCTTC	3 cut(s)	95, 133, 248
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	6 cut(s)	60, 230, 242, 358, 402, 410
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 248, 416, 425
HpyF3I	CTNAG	1 cut(s)	467
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	2 cut(s)	136, 402
KpnI	GGTACC	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	204, 214
LpnPI	CCDG	9 cut(s)	19, 70, 151, 166, 168, 206, 231, 309, 345
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	2 cut(s)	206, 216
MboI	GATC	2 cut(s)	204, 214
MboII	GAAGA	2 cut(s)	151, 201
MhlI	GDGCHC	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	1 cut(s)	418
Mph1103I	ATGCAT	1 cut(s)	404
MseI	TTAA	1 cut(s)	338
MspI	CCGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	360
MwoI	GCNNNNNNNGC	4 cut(s)	227, 248, 416, 425
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	204, 214
NlaIII	CATG	2 cut(s)	136, 402
NlaIV	GGNNCC	2 cut(s)	157, 187
NmuCI	GTSAC	1 cut(s)	373
NsiI	ATGCAT	1 cut(s)	404
PctI	GAATGC	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PshAI	GACNNNNGTC	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	157, 187
RsaI	GTAC	2 cut(s)	187, 396
RsaNI	GTAC	2 cut(s)	186, 395
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	2 cut(s)	204, 214
SchI	GAGTC	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SspMI	CTAG	1 cut(s)	378
StyI	CCWWGG	3 cut(s)	132, 270, 420
TaaI	ACNGT	1 cut(s)	79
TaqII	GACCGA	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	197
XspI	CTAG	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.