Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002661.1

Orthogroup ID

OG0006532

Physical Location & Seq

Genomic Coordinates Reverse (-)

104361 .. 104624

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002661.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atggtgaagaccgaaacttccggttccccaagcaggactacggccattactggtaccatcctgtccaccttgatctcttcagatcctgctttgagtgcacaacgagttgcagatgtcgcagaaggtgataatcgtgccttggcactcctactacctgtaattccagctatactttgggtgctttacaacatccttgagccagctttaaaccaaatcaacagaatgcaaagtgaaaagggagtcactagccgaaaaaggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009987 GO:0010109 GO:0010205 GO:0016020 GO:0019222 GO:0019725 GO:0031323 GO:0031324 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042548 GO:0042592 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0065008 GO:0098796 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbY

Protein Analysis

87

Amino Acids

9.36

Weight (kDa)

9.81

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67740
fragaria_vesca	FvH4_4g25080
malus_domestica	MD13G1106700.v1.1 MD16G1106800.v1.1
prunus_persica	Prupe.1G239600_v2.0.a1 Prupe.5G159900_v2.0.a1
pyrus_communis	pycom13g09250 pycom16g09100
rosa_chinensis	RchiOBHm_Chr4g0432261 RchiOBHm_Chr7g0191491
rosa_laevigata	RLG00000004444
rosa_multiflora	Rmu_co8440915.1_g000001 Rmu_sc0002661.1_g000012 Rmu_sc0037235.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438430 Rroxscaffold_3G00263750 Rroxscaffold_5G00373710
rosa_rugosa	Rorug04G0255700
rosa_samantha	Rh4AG312800 Rh4BG320400 Rh4CG335600 Rh4DG315700 Rh7AG118800 Rh7CG123600 Rh7DG121700
rosa_wichuraiana	Rw4G027190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	53
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	167, 203
AluI	AGCT	2 cut(s)	167, 203
Alw21I	GWGCWC	1 cut(s)	100
Alw44I	GTGCAC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	1 cut(s)	42
ApaLI	GTGCAC	1 cut(s)	96
Asp718I	GGTACC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	16, 137
BaeGI	GKGCMC	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	100
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	25, 55
BpiI	GAAGAC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	57, 189
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	100
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	72, 82
BspANI	GGCC	1 cut(s)	44
BspLI	GGNNCC	2 cut(s)	25, 55
BspPI	GGATC	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	72, 82
BssT1I	CCWWGG	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	57, 189
BstKTI	GATC	2 cut(s)	75, 85
BstMBI	GATC	2 cut(s)	72, 82
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 116
BstSLI	GKGCMC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	57, 189
Cac8I	GCNNGC	1 cut(s)	201
CaiI	CAGNNNCTG	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	54
CviJI	RGCY	5 cut(s)	44, 167, 199, 203, 249
CviKI_1	RGCY	5 cut(s)	44, 167, 199, 203, 249
CviQI	GTAC	1 cut(s)	54
DpnI	GATC	2 cut(s)	74, 84
DpnII	GATC	2 cut(s)	72, 82
DraI	TTTAAA	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaiI	YATR	1 cut(s)	170
FokI	GGATG	2 cut(s)	44, 176
FspBI	CTAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	21
HinfI	GANTC	1 cut(s)	240
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	16, 137
Hpy166II	GTNNAC	2 cut(s)	66, 98
Hpy188I	TCNGA	1 cut(s)	82
Hpy8I	GTNNAC	2 cut(s)	66, 98
HpyAV	CCTTC	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	98, 110, 226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 116
KpnI	GGTACC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	72, 82
LpnPI	CCDG	8 cut(s)	19, 34, 36, 74, 99, 168, 177, 213
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	2 cut(s)	74, 84
MboI	GATC	2 cut(s)	72, 82
MboII	GAAGA	2 cut(s)	19, 69
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	249
MseI	TTAA	1 cut(s)	206
MspI	CCGG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	95, 116
NdeII	GATC	2 cut(s)	72, 82
NlaIV	GGNNCC	2 cut(s)	25, 55
NmuCI	GTSAC	1 cut(s)	241
PctI	GAATGC	1 cut(s)	228
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	25, 55
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	206
Sau3AI	GATC	2 cut(s)	72, 82
SchI	GAGTC	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	5 cut(s)	71, 127, 157, 169, 205
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	159
SspMI	CTAG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	138
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
VneI	GTGCAC	1 cut(s)	96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.