Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002013

Physical Location & Seq

Genomic Coordinates Forward (+)

26383216 .. 26389916

Gene Structure 6701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G70060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3981 bp

ATGGTTGGAGGAAGTAGTGCACAGAAGCTAACTACAAATGATGCACTTGCATATCTTAAAGCTGTCAAGGATAAATTTCAAGATAAACGTGACAAATACGATGAGTTTCTTGAGGTTATGAAAGATTTTAAAGCTCAGAGAGTTGATACTACTGGTGTTATCTTAAGGGTGAAAGAACTTTTTAAAGGGAACAGAGAATTGATTTTGGGGTTTAATACTTTCTTACCAAAGGGTTTCGAGATAACTCTCCGACCCGAGGATGACCAACCCGCTGCACCAAAGAAGCCTGTTGAGTTTGAGGAAGCTATTAGTTTTGTTAACAAGATTAAGACAAGGTTTCAAGGCGATGATCGTGTATACAAATCGTTTTTAGACATTTTGAACATGTATAGAAAGGAAAACAAGTCTATTACTGAGGTCTACCATGAGGTGGCTATCCTTTTTCGGGACCATCACGATTTGCTTGGAGAGTTCACTCACTTTCTCCCTGATACTTCAGCAACTGCATCTACTAATGATTCTGTAAAAGTTCCAGTACGTGATAGAGGCATTAAGTCTCTTCCCACCATGCGTCAAATAGATCTTGATAAGAAGGACCGGATTATTACTTCGCATCCTAACCGTGCCCTCAAAACCGAAAATATGGACGTAGACCATGAGAGGTCTTTGTTGAAAGATAGTAAAGAAGAAGTGAGACGCATTGACAAAAAGAATGATTTCATGGATGATAGAGACAGGAAAGATTACAGAGGTCTTGACCACGATAGCCATAAAGAACATTTCTTCAACAGCAAAAAGAAATTGATACGTAAGGATGATGATTCTGCTGAAATGTCAGATCAAGCCAGGGAAGGAGACAAGTTTTCTGGAGCCATTCCGAGTTCATCTACTTATGATGAAAAAGGTCATAGCCAAGAACTTGCTTTTGTTGATAGAGTGAAGGCAAAGCTTGATACCGCGGATAACCAAGAGTTCTTACGATGTCTTAATCTCTATTCAAAGGAGATAATCAGCCAACCAGAATTGCAGTCTTTGGTGAGTGATTTAATTGGTGTATATCCAGACCTTATGGACGCCTTCAAAGTCTTTTTGGCTCAGTGTGACAAGAATGATGGATTACTCTCTGGTATCGTGTCTAAGAAATCCTTGTGGAGTGAAGGCAAATGTCCTCAACCTACTAAGTCACTTGACAAAGATACAGACCGAGAACGTGAGAAGATTGAAAGGTATAGAGAAAGAGACCGTGAGAAGGAGAGGCTTGAAAAGGTGGCAGCGAGTCAGAAATGGGCTAAACCTATCAGTGAACTAGATCTCTCGAACTGTGAACAGTGCACACCTAGTTATCGGAGACTTCCAAAGAATTATCCAATTCCTATAGCAAGCCAAAAAATGGAGATTGGTAGCCAAGTGCTTAATGATCATTGGGTCTCTGTCACTTCAGGAAGTGAAGACTATTCATTCAAACACATGCGCAAGAACCAATACGAAGAGAGCCTATTCAAATGTGAAGATGACAGGTTCGAGCTAGACATGTTATTAGAGTCTGTGATCTCGGCTACTAATCGAGTTGAAGAGTTATTGGCAAAGATTAACAGTAATGAATTGAAAACCGATACTCCCATCTGTATCGAGGATCACCTCACAGCTCTAAACCTAAGATGCATAGAACGGTTATACAGTGACCATGGGCTCGATGTGTTGGATTTGTTAAAGAAGAATGCATATCTTGCTTTACCGGTAATACTAACCCGTTTGAAACAAAAGCAAGAAGAATGGGCAAGGTGTCGTACTGAGTTTAACAAAGTCTGGGCTGACATATATACAAAGAACTACCACAGGTCGCTTGATCATCGCAGTTTTTATTTCAAACAGCAGGATTCAAAGAATCTGAGCACAAAAGCATTGCTGGCAGAGATAAAAGAGATCTCTGAAAAGAAGCGAGGCGAAGATGATGCACTTCTTGCTCTTGCGGCTGGAAATAGACGAACTATTTCTTCCAATATGAGTTTTGATTATCCGGATCCTGATCTTCACGAAGATCTGTATCAGCTGATCAAGTATTCATGTGGAGAAATGTGTTCAACAGAACAGTTAGATAAGGTAATGAAGGTATGGACAGAATTTTTGGAACCAATATTTGGTGTTCCTTCTCGCCCTCAAGGTGCCGAAGACCGAGAAGATGCTGTCAAGTCTACAAACCATGACCGAGAAGACCAAGAAGATGCTGTCAGTCCTCAAAATGGAGCTAGTATTGCCAACTCTATGCGGTCAAATGGCCCTCGAAAAGTCAATGAAAGTAATCAAGTGCGGCAAGCTAGTGAGTTGGATAAAGATGTTACTTCTAGTAAGACCTCAGATGCCTTGTTATCATGTGACAACACTCAGAATGATAAAATGCCGAAGAATCTGACCACACCTGACGAAAGAGCCGAAACCAAACAAGCTGTTTCTATTGAACGTGCCCATAACTCAAATGCACTACCTCTGGATGGATTGTTACCTCAAAGGAATGGAAAAATCAGCAGTTTATCCGTTGCGGGGCTTAGCAATAGTAATCCAAAACCTGCATTAACCAGTGGAACGGAGGAGTTGAAGCCAAATTACGTAAATGGGCCACGCGTAGAGATTGGCGACAACCCTGTAATTCCAAATGGGACAGTAGCAGAATGGTTCGCTGGGGAAGCCAAAGTCGAAAGAGAGGAGGGTGAACTTTCTCCAACAGGAGATTTTGAAGAAGATAATTATGCAGTTCATGGAGAGAATGACATGGAGGCTCTCAGCAAAAGTAAGGAGAATGATGCAACTGCAGATGATGCAAGTGCTCCAAGATCATCAGATGGTAGCGGAAACACATCTCACAACGGTGATGTTTCTGGAACTGACTCTGGTGATGGTGAAGATTGTTATCGCGAAGATGATATAGACCATAATAAGGTAGAAAGTGAAGGTGAGGCTGAAGAAGGTATGTCTGATGGCCATGATGATACTGAAGGAGATATGCCTGTGTTGTCCATCTCAGTAAAAAACCTGCTACATGTGAAACCTCTTGCAAAGTATGTCCCTCCAGCTTTGTACGATAAGGACAACGATGATTCTCGGAAGAACTCACAAGTCTTTTATGGGAATGATTCTTTTTATGTTCTATTCAGGCTTCATCAGATTTTGTATGACAGAATATTATCAGCAAAAATCAATTCATCATCTCCAGATAGAAAGTGGAAGACCTCAAATCCAACAAACCCCGCTGATTCGTACGCCAGAATCATGGATGCTCTCTACAATTTGCTCGATGGCACATCCGATAATTCAAAGTTCGAAGATGATTGCCGAGCAATTATCGGGACCCAGTCATATGTTCTCTTCACATTAGACAAACTGATCTATAAGCTCATCAAGCATCTCCAAGCAGTAGCAGCTGATGAGATGGACAACAAATTACAACAGCTTTATGCTTATGAGAAATCCAGAAAGCCTGAGAAGTTTCTGGATGCTGTTTATTACGAAAATGCTCTTGTGCTTCTTCCCGATGAGGATATATACCGCATTGAATGTGAACAATCGACACCAAGCAAACTCTCTATTCAGCTTCTGGACTATGGACATGATAAGCCTGATGTGACATCCATATCCATGGACCCAACTTTTGCAGCTTACCTCCACAATGTATTCCTTTCTTATCAACCTAATGCGAAAGAGAATCCTCGAATCTATTTGAAACGGAATAAGCGTAAAAATGGTGGTGACGATGAACTCTGCACCACGGATGAAGTTAAGATTATTAATGGTTTGGAATGTAAGATAACCTGCAGTTCTTCAAAGGTCTCCTATGTATTAGACACCGAGGATGTGTTGCATCGTGCTAAGAGGAGGAAACTTTTAAACCAAAGCGGTTTACCCCTCGCACATGATTCTGTTTGCAGTGGTTCTTTAATTAGGCAAAGGAGAACACAAAGATATCAAAAACTTCTCACCGGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1326

Amino Acids

150.79

Weight (kDa)

5.35

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	31 - 75	1.7e-16	Paired amphipathic helix repeat
PAH	PF02671	119 - 162	2.4e-16	Paired amphipathic helix repeat
PAH	PF02671	323 - 364	2e-13	Paired amphipathic helix repeat
Sin3_corepress	PF08295	442 - 534	5.1e-33	Sin3 family co-repressor
Sin3a_C	PF16879	1039 - 1284	1.3e-42	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24190 AT1G24190 AT1G24190 AT1G70060 AT1G70060
fragaria_vesca	FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300
malus_domestica	MD13G1084700.v1.1 MD16G1083700.v1.1
prunus_persica	Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1
pyrus_communis	pycom13g07320 pycom16g07260
rosa_chinensis	RchiOBHm_Chr4g0444901
rosa_laevigata	RLG00000005790
rosa_multiflora	Rmu_sc0006845.1_g000002 Rmu_sc0013783.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385400
rosa_rugosa	Rorug04G0355800 Rorug04G0355900.1 Rorug04G0356000 Rorug04G0356100
rosa_samantha	Rh4AG417700 Rh4BG429500 Rh4CG444200 Rh4DG425400
rosa_wichuraiana	Rw4G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1472
Acc36I	ACCTGC	3 cut(s)	2572, 3036, 3812
AccB1I	GGYRCC	1 cut(s)	2162
AccB7I	CCANNNNNTGG	3 cut(s)	430, 1390, 2138
AccI	GTMKAC	4 cut(s)	357, 420, 651, 2192
AccII	CGCG	3 cut(s)	959, 2619, 2910
AccIII	TCCGGA	1 cut(s)	2017
AclWI	GGATC	3 cut(s)	1641, 2015, 2028
AcoI	YGGCCR	1 cut(s)	2974
AcsI	RAATTY	2 cut(s)	74, 2120
AcuI	CTGAAG	4 cut(s)	480, 1422, 2976, 3009
AcyI	GRCGYC	1 cut(s)	1074
AfaI	GTAC	4 cut(s)	537, 1789, 3074, 3254
AflII	CTTAAG	1 cut(s)	163
AflIII	ACRYGT	4 cut(s)	384, 1530, 2617, 3034
AgeI	ACCGGT	2 cut(s)	1735, 3971
AjnI	CCWGG	1 cut(s)	845
AjuI	GAANNNNNNNTTGG	2 cut(s)	2121, 2153
AleI	CACNNNNGTG	1 cut(s)	2862
Alw21I	GWGCWC	4 cut(s)	22, 1334, 1895, 2824
Alw26I	GTCTC	8 cut(s)	561, 688, 726, 849, 1233, 1342, 1432, 3826
Alw44I	GTGCAC	2 cut(s)	18, 1330
AlwI	GGATC	3 cut(s)	1641, 2015, 2028
AlwNI	CAGNNNCTG	2 cut(s)	503, 3589
Ama87I	CYCGRG	1 cut(s)	254
Aor13HI	TCCGGA	1 cut(s)	2017
AoxI	GGCC	3 cut(s)	2275, 2612, 2974
ApaLI	GTGCAC	2 cut(s)	18, 1330
ApeKI	GCWGC	4 cut(s)	272, 1271, 3413, 3647
ApoI	RAATTY	2 cut(s)	74, 2120
ArsI	GACNNNNNNTTYG	4 cut(s)	2107, 2139, 3626, 3658
AseI	ATTAAT	1 cut(s)	3780
AsiGI	ACCGGT	2 cut(s)	1735, 3971
Asp700I	GAANNNNTTC	2 cut(s)	716, 1990
AspLEI	GCGC	1 cut(s)	1473
AspS9I	GGNCC	6 cut(s)	448, 595, 2276, 2612, 3342, 3634
AsuII	TTCGAA	1 cut(s)	3315
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	4 cut(s)	448, 595, 3342, 3634
BaeGI	GKGCMC	4 cut(s)	22, 628, 1334, 2464
BalI	TGGCCA	1 cut(s)	2976
BamHI	GGATCC	1 cut(s)	2020
BanI	GGYRCC	1 cut(s)	2162
BanII	GRGCYC	1 cut(s)	1692
BarI	GAAGNNNNNNTAC	2 cut(s)	2585, 2617
BbsI	GAAGAC	4 cut(s)	1455, 2175, 2217, 3227
Bbv12I	GWGCWC	4 cut(s)	22, 1334, 1895, 2824
BbvI	GCAGC	4 cut(s)	259, 1283, 3425, 3659
BcgI	CGANNNNNNTGC	2 cut(s)	1934, 1968
BciT130I	CCWGG	1 cut(s)	847
BclI	TGATCA	3 cut(s)	1417, 1846, 2052
BcoDI	GTCTC	8 cut(s)	561, 688, 726, 849, 1233, 1342, 1432, 3826
BfaI	CTAG	6 cut(s)	1307, 1338, 1526, 2247, 2316, 2343
BfmI	CTRYAG	3 cut(s)	1374, 2805, 3805
BfrI	CTTAAG	1 cut(s)	163
BfuAI	ACCTGC	3 cut(s)	2572, 3036, 3812
BglII	AGATCT	4 cut(s)	580, 1309, 1923, 2038
BisI	GCNGC	6 cut(s)	273, 1272, 1971, 2309, 3414, 3648
BlpI	GCTNAGC	1 cut(s)	2543
BlsI	GCNGC	6 cut(s)	274, 1273, 1972, 2310, 3415, 3649
Bme1390I	CCNGG	1 cut(s)	847
Bme18I	GGWCC	4 cut(s)	448, 595, 3342, 3634
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	6 cut(s)	448, 595, 2276, 2612, 3342, 3634
BmiI	GGNNCC	8 cut(s)	449, 871, 2022, 2130, 2164, 3343, 3344, 3636
BmrFI	CCNGG	1 cut(s)	847
BmrI	ACTGGG	1 cut(s)	3340
BmuI	ACTGGG	1 cut(s)	3340
BpiI	GAAGAC	4 cut(s)	1455, 2175, 2217, 3227
BpmI	CTGGAG	3 cut(s)	888, 3048, 3189
Bpu1102I	GCTNAGC	1 cut(s)	2543
Bpu14I	TTCGAA	1 cut(s)	3315
BpuEI	CTTGAG	2 cut(s)	131, 2142
BsaAI	YACGTR	3 cut(s)	539, 809, 2605
BsaBI	GATNNNNATC	3 cut(s)	2025, 2043, 2904
BsaHI	GRCGYC	1 cut(s)	1074
BsaI	GGTCTC	3 cut(s)	1233, 1432, 3826
BsaJI	CCNNGG	7 cut(s)	255, 846, 957, 1684, 3630, 3759, 3840
BsaWI	WCCGGW	4 cut(s)	597, 1735, 2017, 3971
BsaXI	ACNNNNNCTCC	2 cut(s)	1600, 1630
Bse118I	RCCGGY	2 cut(s)	1735, 3971
Bse1I	ACTGG	4 cut(s)	157, 533, 2574, 3346
Bse3DI	GCAATG	1 cut(s)	1901
Bse8I	GATNNNNATC	3 cut(s)	2025, 2043, 2904
BseAI	TCCGGA	1 cut(s)	2017
BseBI	CCWGG	1 cut(s)	847
BseDI	CCNNGG	7 cut(s)	255, 846, 957, 1684, 3630, 3759, 3840
BseJI	GATNNNNATC	3 cut(s)	2025, 2043, 2904
BseMI	GCAATG	1 cut(s)	1901
BseNI	ACTGG	4 cut(s)	157, 533, 2574, 3346
BseRI	GAGGAG	3 cut(s)	2600, 2714, 3880
BseSI	GKGCMC	4 cut(s)	22, 628, 1334, 2464
BseXI	GCAGC	4 cut(s)	259, 1283, 3425, 3659
BseYI	CCCAGC	1 cut(s)	2675
BsgI	GTGCAG	2 cut(s)	258, 3739
Bsh1236I	CGCG	3 cut(s)	959, 2619, 2910
BshFI	GGCC	3 cut(s)	2277, 2614, 2976
BshNI	GGYRCC	1 cut(s)	2162
BshTI	ACCGGT	2 cut(s)	1735, 3971
BsiHKAI	GWGCWC	4 cut(s)	22, 1334, 1895, 2824
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	4 cut(s)	598, 1736, 2018, 3972
BsiWI	CGTACG	1 cut(s)	3252
BslFI	GGGAC	4 cut(s)	461, 2668, 3044, 3355
BsmAI	GTCTC	8 cut(s)	561, 688, 726, 849, 1233, 1342, 1432, 3826
BsmBI	CGTCTC	1 cut(s)	688
BsmFI	GGGAC	4 cut(s)	461, 2668, 3044, 3355
BsmI	GAATGC	1 cut(s)	1723
BsnI	GGCC	3 cut(s)	2277, 2614, 2976
Bso31I	GGTCTC	3 cut(s)	1233, 1432, 3826
BsoBI	CYCGRG	1 cut(s)	254
Bsp119I	TTCGAA	1 cut(s)	3315
Bsp1286I	GDGCHC	7 cut(s)	22, 628, 1334, 1692, 1895, 2464, 2824
Bsp13I	TCCGGA	1 cut(s)	2017
Bsp1720I	GCTNAGC	1 cut(s)	2543
Bsp19I	CCATGG	2 cut(s)	1684, 3630
Bsp68I	TCGCGA	1 cut(s)	2910
BspANI	GGCC	3 cut(s)	2277, 2614, 2976
BspEI	TCCGGA	1 cut(s)	2017
BspFNI	CGCG	3 cut(s)	959, 2619, 2910
BspLI	GGNNCC	8 cut(s)	449, 871, 2022, 2130, 2164, 3343, 3344, 3636
BspMAI	CTGCAG	2 cut(s)	2809, 3809
BspMI	ACCTGC	3 cut(s)	2572, 3036, 3812
BspPI	GGATC	3 cut(s)	1641, 2015, 2028
BspT104I	TTCGAA	1 cut(s)	3315
BspT107I	GGYRCC	1 cut(s)	2162
BspTI	CTTAAG	1 cut(s)	163
BspTNI	GGTCTC	3 cut(s)	1233, 1432, 3826
BsrDI	GCAATG	1 cut(s)	1901
BsrFI	RCCGGY	2 cut(s)	1735, 3971
BsrI	ACTGG	4 cut(s)	157, 533, 2574, 3346
BssAI	RCCGGY	2 cut(s)	1735, 3971
BssECI	CCNNGG	7 cut(s)	255, 846, 957, 1684, 3630, 3759, 3840
BssNAI	GTATAC	1 cut(s)	358
BssNI	GRCGYC	1 cut(s)	1074
BssT1I	CCWWGG	2 cut(s)	1684, 3630
Bst1107I	GTATAC	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	847
Bst6I	CTCTTC	4 cut(s)	564, 1482, 1566, 3365
BstACI	GRCGYC	1 cut(s)	1074
BstAFI	CTTAAG	1 cut(s)	163
BstAPI	GCANNNNNTGC	3 cut(s)	1727, 1961, 2813
BstBAI	YACGTR	3 cut(s)	539, 809, 2605
BstBI	TTCGAA	1 cut(s)	3315
BstC8I	GCNNGC	3 cut(s)	1381, 1908, 2313
BstDSI	CCRYGG	4 cut(s)	957, 1684, 3630, 3759
BstFNI	CGCG	3 cut(s)	959, 2619, 2910
BstHHI	GCGC	1 cut(s)	1473
BstMAI	GTCTC	8 cut(s)	561, 688, 726, 849, 1233, 1342, 1432, 3826
BstMWI	GCNNNNNNNGC	9 cut(s)	1727, 1907, 1961, 1970, 2252, 2681, 2813, 3394, 3413
BstNI	CCWGG	1 cut(s)	847
BstNSI	RCATGY	4 cut(s)	388, 1471, 1534, 3038
BstSCI	CCNGG	1 cut(s)	845
BstSFI	CTRYAG	3 cut(s)	1374, 2805, 3805
BstSLI	GKGCMC	4 cut(s)	22, 628, 1334, 2464
BstSNI	TACGTA	2 cut(s)	809, 2605
BstUI	CGCG	3 cut(s)	959, 2619, 2910
BstV1I	GCAGC	4 cut(s)	259, 1283, 3425, 3659
BstV2I	GAAGAC	4 cut(s)	1455, 2175, 2217, 3227
BstX2I	RGATCY	5 cut(s)	580, 1309, 1923, 2020, 2038
BstXI	CCANNNNNNTGG	2 cut(s)	3265, 3631
BstYI	RGATCY	5 cut(s)	580, 1309, 1923, 2020, 2038
BstZ17I	GTATAC	1 cut(s)	358
BsuRI	GGCC	3 cut(s)	2277, 2614, 2976
BtgI	CCRYGG	4 cut(s)	957, 1684, 3630, 3759
BtgZI	GCGATG	2 cut(s)	360, 1835
BtsI	GCAGTG	1 cut(s)	3925
BtsIMutI	CAGTG	6 cut(s)	1103, 1306, 1334, 1684, 2581, 3925
BtuMI	TCGCGA	1 cut(s)	2910
BveI	ACCTGC	3 cut(s)	2572, 3036, 3812
Cac8I	GCNNGC	3 cut(s)	1381, 1908, 2313
CaiI	CAGNNNCTG	2 cut(s)	503, 3589
CfoI	GCGC	1 cut(s)	1473
Cfr10I	RCCGGY	2 cut(s)	1735, 3971
Cfr13I	GGNCC	6 cut(s)	448, 595, 2276, 2612, 3342, 3634
Cfr42I	CCGCGG	1 cut(s)	960
CseI	GACGC	3 cut(s)	560, 705, 1082
Csp6I	GTAC	4 cut(s)	536, 1788, 3073, 3253
CspAI	ACCGGT	2 cut(s)	1735, 3971
CviQI	GTAC	4 cut(s)	536, 1788, 3073, 3253
DraI	TTTAAA	3 cut(s)	130, 184, 3879
EaeI	YGGCCR	1 cut(s)	2974
Eam1104I	CTCTTC	4 cut(s)	564, 1482, 1566, 3365
EarI	CTCTTC	4 cut(s)	564, 1482, 1566, 3365
Eco105I	TACGTA	2 cut(s)	809, 2605
Eco130I	CCWWGG	2 cut(s)	1684, 3630
Eco24I	GRGCYC	1 cut(s)	1692
Eco31I	GGTCTC	3 cut(s)	1233, 1432, 3826
Eco32I	GATATC	1 cut(s)	3956
Eco47I	GGWCC	4 cut(s)	448, 595, 3342, 3634
Eco57I	CTGAAG	4 cut(s)	480, 1422, 2976, 3009
Eco88I	CYCGRG	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	3342
EcoRII	CCWGG	1 cut(s)	845
EcoRV	GATATC	1 cut(s)	3956
EcoT14I	CCWWGG	2 cut(s)	1684, 3630
EcoT22I	ATGCAT	2 cut(s)	1664, 1723
EcoT38I	GRGCYC	1 cut(s)	1692
ErhI	CCWWGG	2 cut(s)	1684, 3630
Esp3I	CGTCTC	1 cut(s)	688
FalI	AAGNNNNNCTT	2 cut(s)	1130, 1162
FaqI	GGGAC	4 cut(s)	461, 2668, 3044, 3355
FauI	CCCGC	3 cut(s)	277, 2530, 3250
FauNDI	CATATG	1 cut(s)	3352
FbaI	TGATCA	3 cut(s)	1417, 1846, 2052
FblI	GTMKAC	4 cut(s)	357, 420, 651, 2192
Fnu4HI	GCNGC	6 cut(s)	273, 1272, 1971, 2309, 3414, 3648
FriOI	GRGCYC	1 cut(s)	1692
Fsp4HI	GCNGC	6 cut(s)	273, 1272, 1971, 2309, 3414, 3648
FspBI	CTAG	6 cut(s)	1307, 1338, 1526, 2247, 2316, 2343
FspI	TGCGCA	1 cut(s)	1472
GlaI	GCGC	1 cut(s)	1472
GluI	GCNGC	6 cut(s)	273, 1272, 1971, 2309, 3414, 3648
GsaI	CCCAGC	1 cut(s)	2679
GsuI	CTGGAG	3 cut(s)	888, 3048, 3189
HaeIII	GGCC	3 cut(s)	2277, 2614, 2976
HapII	CCGG	4 cut(s)	598, 1736, 2018, 3972
HgaI	GACGC	3 cut(s)	560, 705, 1082
HhaI	GCGC	1 cut(s)	1473
Hin1I	GRCGYC	1 cut(s)	1074
Hin6I	GCGC	1 cut(s)	1471
HinP1I	GCGC	1 cut(s)	1471
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	947
HpaI	GTTAAC	1 cut(s)	319
HpaII	CCGG	4 cut(s)	598, 1736, 2018, 3972
HpyCH4IV	ACGT	7 cut(s)	88, 538, 648, 808, 1210, 2458, 2604
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1727, 1907, 1961, 1970, 2252, 2681, 2813, 3394, 3413
HpySE526I	ACGT	7 cut(s)	88, 538, 648, 808, 1210, 2458, 2604
Hsp92I	GRCGYC	1 cut(s)	1074
HspAI	GCGC	1 cut(s)	1471
KflI	GGGWCCC	1 cut(s)	3342
Kpn2I	TCCGGA	1 cut(s)	2017
Ksp22I	TGATCA	3 cut(s)	1417, 1846, 2052
KspAI	GTTAAC	1 cut(s)	319
KspI	CCGCGG	1 cut(s)	960
LmnI	GCTCC	3 cut(s)	869, 2243, 2827
Lsp1109I	GCAGC	4 cut(s)	259, 1283, 3425, 3659
MaeI	CTAG	6 cut(s)	1307, 1338, 1526, 2247, 2316, 2343
MaeII	ACGT	7 cut(s)	88, 538, 648, 808, 1210, 2458, 2604
MflI	RGATCY	5 cut(s)	580, 1309, 1923, 2020, 2038
MhlI	GDGCHC	7 cut(s)	22, 628, 1334, 1692, 1895, 2464, 2824
MlsI	TGGCCA	1 cut(s)	2976
MluI	ACGCGT	1 cut(s)	2617
MluNI	TGGCCA	1 cut(s)	2976
MlyI	GAGTC	3 cut(s)	1285, 1550, 2876
MmeI	TCCRAC	5 cut(s)	274, 1680, 2304, 2741, 3257
Mox20I	TGGCCA	1 cut(s)	2976
Mph1103I	ATGCAT	2 cut(s)	1664, 1723
MroI	TCCGGA	1 cut(s)	2017
MroXI	GAANNNNTTC	2 cut(s)	716, 1990
MscI	TGGCCA	1 cut(s)	2976
MslI	CAYNNNNRTG	2 cut(s)	2862, 3629
Msp20I	TGGCCA	1 cut(s)	2976
MspA1I	CMGCKG	5 cut(s)	272, 959, 2050, 3245, 3416
MspCI	CTTAAG	1 cut(s)	163
MspI	CCGG	4 cut(s)	598, 1736, 2018, 3972
MspR9I	CCNGG	1 cut(s)	847
Mva1269I	GAATGC	1 cut(s)	1723
MvaI	CCWGG	1 cut(s)	847
MvnI	CGCG	3 cut(s)	959, 2619, 2910
MwoI	GCNNNNNNNGC	9 cut(s)	1727, 1907, 1961, 1970, 2252, 2681, 2813, 3394, 3413
NcoI	CCATGG	2 cut(s)	1684, 3630
NdeI	CATATG	1 cut(s)	3352
NlaIV	GGNNCC	8 cut(s)	449, 871, 2022, 2130, 2164, 3343, 3344, 3636
NmeAIII	GCCGAG	2 cut(s)	1532, 3353
NmuCI	GTSAC	8 cut(s)	89, 1100, 1182, 1432, 1679, 2372, 3616, 3740
NruI	TCGCGA	1 cut(s)	2910
NsbI	TGCGCA	1 cut(s)	1472
NsiI	ATGCAT	2 cut(s)	1664, 1723
NspI	RCATGY	4 cut(s)	388, 1471, 1534, 3038
NspV	TTCGAA	1 cut(s)	3315
OliI	CACNNNNGTG	1 cut(s)	2862
PciI	ACATGT	3 cut(s)	384, 1530, 3034
PcsI	WCGNNNNNNNCGW	2 cut(s)	2427, 3724
PctI	GAATGC	1 cut(s)	1723
PdmI	GAANNNNTTC	2 cut(s)	716, 1990
Pfl23II	CGTACG	1 cut(s)	3252
PflFI	GACNNNGTC	1 cut(s)	3346
PflMI	CCANNNNNTGG	3 cut(s)	430, 1390, 2138
PinAI	ACCGGT	2 cut(s)	1735, 3971
PkrI	GCNGC	6 cut(s)	274, 1273, 1972, 2310, 3415, 3649
PleI	GAGTC	3 cut(s)	1284, 1549, 2876
PpsI	GAGTC	3 cut(s)	1284, 1549, 2876
Ppu21I	YACGTR	3 cut(s)	539, 809, 2605
PpuMI	RGGWCCY	1 cut(s)	3342
PscI	ACATGT	3 cut(s)	384, 1530, 3034
PshBI	ATTAAT	1 cut(s)	3780
Psp5II	RGGWCCY	1 cut(s)	3342
Psp6I	CCWGG	1 cut(s)	845
PspFI	CCCAGC	1 cut(s)	2675
PspGI	CCWGG	1 cut(s)	845
PspLI	CGTACG	1 cut(s)	3252
PspN4I	GGNNCC	8 cut(s)	449, 871, 2022, 2130, 2164, 3343, 3344, 3636
PspPI	GGNCC	6 cut(s)	448, 595, 2276, 2612, 3342, 3634
PspPPI	RGGWCCY	1 cut(s)	3342
PstI	CTGCAG	2 cut(s)	2809, 3809
PstNI	CAGNNNCTG	2 cut(s)	503, 3589
PsuI	RGATCY	5 cut(s)	580, 1309, 1923, 2020, 2038
PsyI	GACNNNGTC	1 cut(s)	3346
PvuII	CAGCTG	2 cut(s)	2050, 3416
RruI	TCGCGA	1 cut(s)	2910
RsaI	GTAC	4 cut(s)	537, 1789, 3074, 3254
RsaNI	GTAC	4 cut(s)	536, 1788, 3073, 3253
RseI	CAYNNNNRTG	2 cut(s)	2862, 3629
SacII	CCGCGG	1 cut(s)	960
SatI	GCNGC	6 cut(s)	273, 1272, 1971, 2309, 3414, 3648
Sau96I	GGNCC	6 cut(s)	448, 595, 2276, 2612, 3342, 3634
SchI	GAGTC	3 cut(s)	1285, 1550, 2876
ScrFI	CCNGG	1 cut(s)	847
SduI	GDGCHC	7 cut(s)	22, 628, 1334, 1692, 1895, 2464, 2824
SfcI	CTRYAG	3 cut(s)	1374, 2805, 3805
Sfr303I	CCGCGG	1 cut(s)	960
SfuI	TTCGAA	1 cut(s)	3315
SgrBI	CCGCGG	1 cut(s)	960
SinI	GGWCC	4 cut(s)	448, 595, 3342, 3634
SmiMI	CAYNNNNRTG	2 cut(s)	2862, 3629
SmlI	CTYRAG	3 cut(s)	110, 163, 2157
SmoI	CTYRAG	3 cut(s)	110, 163, 2157
SnaBI	TACGTA	2 cut(s)	809, 2605
SspI	AATATT	2 cut(s)	2136, 3177
SspMI	CTAG	6 cut(s)	1307, 1338, 1526, 2247, 2316, 2343
StyD4I	CCNGG	1 cut(s)	845
StyI	CCWWGG	2 cut(s)	1684, 3630
TaiI	ACGT	7 cut(s)	91, 541, 651, 811, 1213, 2461, 2607
TaqII	GACCGA	3 cut(s)	1218, 2187, 2220
TauI	GCSGC	2 cut(s)	1973, 2311
TscAI	CASTG	6 cut(s)	1103, 1306, 1334, 1684, 2581, 3925
TseFI	GTSAC	8 cut(s)	89, 1100, 1182, 1432, 1679, 2372, 3616, 3740
TseI	GCWGC	4 cut(s)	272, 1271, 3413, 3647
Tsp45I	GTSAC	8 cut(s)	89, 1100, 1182, 1432, 1679, 2372, 3616, 3740
TspGWI	ACGGA	4 cut(s)	2521, 2597, 3733, 3776
TspRI	CASTG	6 cut(s)	1103, 1306, 1334, 1684, 2581, 3925
Tth111I	GACNNNGTC	1 cut(s)	3346
Van91I	CCANNNNNTGG	3 cut(s)	430, 1390, 2138
Vha464I	CTTAAG	1 cut(s)	163
VneI	GTGCAC	2 cut(s)	18, 1330
VpaK11BI	GGWCC	4 cut(s)	448, 595, 3342, 3634
VspI	ATTAAT	1 cut(s)	3780
XapI	RAATTY	2 cut(s)	74, 2120
XceI	RCATGY	4 cut(s)	388, 1471, 1534, 3038
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3213
XmiI	GTMKAC	4 cut(s)	357, 420, 651, 2192
XmnI	GAANNNNTTC	2 cut(s)	716, 1990
XspI	CTAG	6 cut(s)	1307, 1338, 1526, 2247, 2316, 2343
Zsp2I	ATGCAT	2 cut(s)	1664, 1723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.