Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013783.1

Orthogroup ID

OG0002013

Physical Location & Seq

Genomic Coordinates Reverse (-)

13431 .. 26729

Gene Structure 13299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013783.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3672 bp

atgtggtatggtgatgaaagatgtaaggatatcattcagagtcattgggctcagctaactactagtaatgttcttaaccaaatgggccagaagattgataccatgggtcttcaagattcaaatagtgaatggaagaccaatcctgatgatgtgcaacgtatgcttttgaattattaccagacaatttttgcaactgaagaagctaatgaggaggctattttagaaattttcagggctactcccatgaaggtgacaccggttatggatagacacttgctacaaccctattctgatgatgaaatcaaagatgccttgtttcaaatgcacccctccaaaagtcctagactggatggcacgactctttttttcttccagaagtattggagcattgttgaagactttggctattcgacgactcaacgatcccctcggattttggagtttttgaagtgcctccatatttatagcaaggaaattattacccgggctgaattgcagtcattggtgggtgatttacttggaaaatatccagatcttatggatgggttcaatgaatttttgtcatgttgtgagaagaaagatgggttccttgctggtgtcatgagtaaaaaatctttgtggaatgaaggcaatctaccaagaccagtgaaggtagaggataaggagaaagatcgagatcgtgaaagggatgatgtggttagagatagagagcgtgaaaaccgagaaagggatagacctgatagaaatggtgcctttggaaataaagaaattggaggccagaagatctctatattttccggcaaggacaaatatttggcaaaacctattaatgagcttgacctctctaattgtgagcgttgcactccaagctatcgtcttctgccaaagaattatccaataccttctgctagccaaagaacagaacttgggtctgaagtactaaatgatcattgggtgtctgttacttctggaagcgaggattattcttttaaacacatgcgcaaaaaccagtatgaagaaagcctgtttcggtgtgaagatgataggtttgaattagatatgctgttagagtctgtgaatgtaacgaccaagcgtgtggaagaactattagagaaggtcaacaacaataccattaagaccgagaatccaatccgtgtagaagaatacttcacagctctgaatctaaggtgcgttgagcgattatatggtgaccacgggcttgatgtaatggatgtgttgaggaaaaatgctccactagctttgcctgttatattaacgcgcttgaagcaaaagcaagaagagtgggcaaggtgtcgctctgattttaacaaagtctgggctgatatatatgccaagaactatcacaagtcacttgatcatcgtagcttctacttcaagcaacaggactcaaagagcttaagcaccaaagccttgttggcagagattaaagagatgagtgagaagaagcggaaggaagatgatgttcttcttgctattgctgctggaaatagacgtcctattattccaaatttggaattcgagtaccctgatgcggacatccatgaagatctgtatcaactcatcaaatattcttgtggagaagtttgcacaaccgagcagttggacaaagttatgaagatatggacaaccttccttgagccagtgcttggtgttcctcctcggcctcaggttgcagaggatactgaagatgttgtgaaggcaaaaactcatgctggcaaaaatggtgctgtgagtgggggagagagtgatgataatcctgatggtggggctactgtgacaaattctaaacagttaaattcatcgagaaatggagacgaaagcattcaacctgaacaatcaagctctgcaagagcttggacagtaaatggagctaatgggctcaaagaagaaagttctcatgatattgatcgtgctacatgtaaaggtgatactttctgcaatacctctcaacaaggtaaagtgcaaagtaatgcatctacagccgatgaaatgtctggagtgagcaaacaagacaattttaatgaacgattagtcaattctaatgtatcacttgctactggcttggagcaaagcaatggaagaactaatgtggaaaactcatcaggtcttagtcctactccttccagacctggaaatggcactgttgagggtgggcttgagttaccttcacggtcttcaccagagggtggtgattctactagaccagttatatcctcaaatggagcaatcacagaagccacgaaaggtcacagatatgtggaagagtcggttagacacttcaagattgaaagagaagaaggtgaaatatctccaaatggagattttgaggaggataattttgcaaactatagagaagccggttcagaggctgttcaaaaaccaaaggatggtgtttccagcaggcaacttaaaggcaggcatggggaagaagaaatatgtggtggagatgcaggtggagaaaatgaggctgatgctgatgatgaaggtgaggaaagtgctcatagatcatcagaggatagtgagaatgcttctgagaatggcgatgtctctggaagtgaatctggtgagggagaggaatgttctcgagaagagcgtgaggaagatggggaccatgatgagcatgatactaaggccgagagtgaaggtgaagctgaagggacggccgatgcccatgatgttgacggagatggaacttctttaccgcactcagaacgttttctactttctgtgaagcctcttgcaaaacatgtccttccagctttacatgacaaggacaaggactcaaggattttctatggaaacgattctttctatgtactttttaggcttcaccaaacactatatgagagaatacaatcagcaaagattaactcgtcatcagcggagaagaagtggcgggcatcaaatgatacaagcacttctgattcgtatgctagattcatgaatgccctttacaatttacttgacggttcttctgacaatacaaaatttgaggatgattgtcgagctatcattgggactcagtcatatcttcttttcacattagacaagctgatctacaagcttgttaaacagctccaaacagtcgccagtgatgagatggataataaacttgtccaactatatgcatttgaaaaatctagaaaaccaggaagatttgtggatgtagtttatcacgaaaatgctcgtgttcttcttcacgatgagaacatttatcgcatagaatgtttctctttgccaacccgggtgtctattcagcttatggattatgggaatgataagcctgaaatgactgctgtttcaatggaccctaatttttctgcttatttgcacaatgattttctcactgttcttcctgacaaaagagagaagtctgggatcttcttgaagaggaacaaacgcaaatatgcgagttgtgatgatttgtctgctatttgtcaggccatggaaggacttaaagtcgccaatggtctggagtgtaagatagcttgtcattcatccaaggtatcatatgttttagatacagaagactttttgtttcggacaaaaaggagaagaaaaacttcgaacagttcctgccataaccaggctaggtcttctagtggttcaagtagagtagagcggtttcaccggttgctatccggctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1223

Amino Acids

138.15

Weight (kDa)

5.16

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24190 AT1G24190 AT1G24190 AT1G70060 AT1G70060
fragaria_vesca	FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300
malus_domestica	MD13G1084700.v1.1 MD16G1083700.v1.1
prunus_persica	Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1
pyrus_communis	pycom13g07320 pycom16g07260
rosa_chinensis	RchiOBHm_Chr4g0444901
rosa_laevigata	RLG00000005790
rosa_multiflora	Rmu_sc0006845.1_g000002 Rmu_sc0013783.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385400
rosa_rugosa	Rorug04G0355800 Rorug04G0355900.1 Rorug04G0356000 Rorug04G0356100
rosa_samantha	Rh4AG417700 Rh4BG429500 Rh4CG444200 Rh4DG425400
rosa_wichuraiana	Rw4G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2462
AatII	GACGTC	1 cut(s)	1516
Acc16I	TGCGCA	1 cut(s)	1001
Acc36I	ACCTGC	1 cut(s)	2462
AccB1I	GGYRCC	1 cut(s)	749
AccB7I	CCANNNNNTGG	3 cut(s)	1667, 2207, 2408
AccBSI	CCGCTC	1 cut(s)	3643
AccII	CGCG	1 cut(s)	1279
AciI	CCGC	6 cut(s)	1468, 1553, 2723, 2903, 2917, 3643
AclI	AACGTT	1 cut(s)	2734
AclWI	GGATC	2 cut(s)	417, 3407
AcoI	YGGCCR	1 cut(s)	2682
AcsI	RAATTY	7 cut(s)	225, 554, 1528, 1535, 1801, 1816, 3008
AcuI	CTGAAG	4 cut(s)	216, 954, 1725, 2694
AcyI	GRCGYC	1 cut(s)	1513
AfaI	GTAC	3 cut(s)	939, 1544, 2838
AfiI	CCNNNNNNNGG	8 cut(s)	727, 1552, 1667, 1784, 2156, 2207, 2408, 3607
AflII	CTTAAG	1 cut(s)	1417
AflIII	ACRYGT	2 cut(s)	1937, 2767
AgeI	ACCGGT	2 cut(s)	256, 3651
AhdI	GACNNNNNGTC	1 cut(s)	3479
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	3 cut(s)	2149, 3169, 3606
Alw21I	GWGCWC	1 cut(s)	2521
Alw26I	GTCTC	2 cut(s)	1827, 2572
AlwI	GGATC	2 cut(s)	417, 3407
AlwNI	CAGNNNCTG	2 cut(s)	2390, 3597
Ama87I	CYCGRG	3 cut(s)	483, 2604, 3264
AoxI	GGCC	6 cut(s)	85, 775, 1682, 2652, 2682, 3462
ApeKI	GCWGC	1 cut(s)	1499
ApoI	RAATTY	7 cut(s)	225, 554, 1528, 1535, 1801, 1816, 3008
AseI	ATTAAT	1 cut(s)	828
AsiGI	ACCGGT	2 cut(s)	256, 3651
Asp700I	GAANNNNTTC	4 cut(s)	1842, 2736, 2824, 3583
AspLEI	GCGC	2 cut(s)	1002, 1281
AspS9I	GGNCC	3 cut(s)	85, 2629, 3328
AsuC2I	CCSGG	4 cut(s)	484, 485, 3265, 3266
AsuII	TTCGAA	1 cut(s)	3587
AsuNHI	GCTAGC	1 cut(s)	908
AvaI	CYCGRG	3 cut(s)	483, 2604, 3264
AvaII	GGWCC	2 cut(s)	2629, 3328
AxyI	CCTNAGG	1 cut(s)	1686
BanI	GGYRCC	1 cut(s)	749
BanII	GRGCYC	2 cut(s)	52, 1902
BarI	GAAGNNNNNNTAC	2 cut(s)	618, 650
BauI	CACGAG	1 cut(s)	3207
BbsI	GAAGAC	7 cut(s)	101, 140, 402, 869, 2187, 3555, 3609
Bbv12I	GWGCWC	1 cut(s)	2521
BbvI	GCAGC	1 cut(s)	1486
BccI	CCATC	8 cut(s)	344, 536, 575, 1775, 2402, 2618, 2702, 3115
BceAI	ACGGC	1 cut(s)	2697
BciT130I	CCWGG	3 cut(s)	2151, 3171, 3608
BciVI	GTATCC	1 cut(s)	1693
BclI	TGATCA	2 cut(s)	946, 1375
BcnI	CCSGG	4 cut(s)	484, 485, 3265, 3266
BcoDI	GTCTC	2 cut(s)	1827, 2572
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	9 cut(s)	63, 342, 909, 1256, 2220, 2955, 3162, 3612, 3621
BfmI	CTRYAG	2 cut(s)	1998, 2368
BfrI	CTTAAG	1 cut(s)	1417
BfuAI	ACCTGC	1 cut(s)	2462
BfuI	GTATCC	1 cut(s)	1693
BglI	GCCNNNNNGGC	1 cut(s)	1436
BglII	AGATCT	3 cut(s)	532, 783, 1567
BisI	GCNGC	1 cut(s)	1500
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	1501
BmcAI	AGTACT	1 cut(s)	939
Bme1390I	CCNGG	7 cut(s)	484, 485, 2151, 3171, 3265, 3266, 3608
Bme18I	GGWCC	2 cut(s)	2629, 3328
BmeRI	GACNNNNNGTC	1 cut(s)	3479
BmeT110I	CYCGRG	3 cut(s)	483, 2604, 3264
BmgT120I	GGNCC	3 cut(s)	85, 2629, 3328
BmiI	GGNNCC	4 cut(s)	587, 751, 2630, 3330
BmrFI	CCNGG	7 cut(s)	484, 485, 2151, 3171, 3265, 3266, 3608
BmsI	GCATC	7 cut(s)	298, 1540, 2003, 2458, 2482, 2677, 2930
BmtI	GCTAGC	1 cut(s)	912
BpiI	GAAGAC	7 cut(s)	101, 140, 402, 869, 2187, 3555, 3609
BpmI	CTGGAG	2 cut(s)	2037, 3515
Bpu1102I	GCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	3587
BpuEI	CTTGAG	3 cut(s)	1676, 2198, 2788
BpuMI	CCSGG	4 cut(s)	484, 485, 3265, 3266
BsaBI	GATNNNNATC	4 cut(s)	675, 1572, 1773, 1926
BsaHI	GRCGYC	1 cut(s)	1513
BsaJI	CCNNGG	8 cut(s)	102, 428, 483, 1213, 1679, 3264, 3465, 3522
BsaWI	WCCGGW	2 cut(s)	256, 3651
BsaXI	ACNNNNNCTCC	2 cut(s)	2897, 2927
Bsc4I	CCNNNNNNNGG	8 cut(s)	727, 1552, 1667, 1784, 2156, 2207, 2408, 3607
Bse118I	RCCGGY	3 cut(s)	256, 2378, 3651
Bse1I	ACTGG	7 cut(s)	351, 644, 1009, 1661, 2083, 2225, 3111
Bse21I	CCTNAGG	1 cut(s)	1686
Bse3DI	GCAATG	1 cut(s)	2101
Bse8I	GATNNNNATC	4 cut(s)	675, 1572, 1773, 1926
BseBI	CCWGG	3 cut(s)	2151, 3171, 3608
BseDI	CCNNGG	8 cut(s)	102, 428, 483, 1213, 1679, 3264, 3465, 3522
BseGI	GGATG	9 cut(s)	355, 547, 694, 1237, 1557, 2413, 3022, 3190, 3518
BseJI	GATNNNNATC	4 cut(s)	675, 1572, 1773, 1926
BseLI	CCNNNNNNNGG	8 cut(s)	727, 1552, 1667, 1784, 2156, 2207, 2408, 3607
BseMI	GCAATG	1 cut(s)	2101
BseMII	CTCAG	5 cut(s)	65, 1700, 2544, 2742, 3056
BseNI	ACTGG	7 cut(s)	351, 644, 1009, 1661, 2083, 2225, 3111
BseRI	GAGGAG	3 cut(s)	224, 1668, 2363
BseX3I	CGGCCG	1 cut(s)	2682
BseXI	GCAGC	1 cut(s)	1486
Bsh1236I	CGCG	1 cut(s)	1279
Bsh1285I	CGRYCG	1 cut(s)	2685
BshFI	GGCC	6 cut(s)	87, 777, 1684, 2654, 2684, 3464
BshNI	GGYRCC	1 cut(s)	749
BshTI	ACCGGT	2 cut(s)	256, 3651
BsiEI	CGRYCG	1 cut(s)	2685
BsiHKAI	GWGCWC	1 cut(s)	2521
BsiHKCI	CYCGRG	3 cut(s)	483, 2604, 3264
BsiSI	CCGG	7 cut(s)	257, 484, 798, 2379, 3265, 3652, 3663
BslFI	GGGAC	3 cut(s)	2642, 2692, 3052
BslI	CCNNNNNNNGG	8 cut(s)	727, 1552, 1667, 1784, 2156, 2207, 2408, 3607
BsmAI	GTCTC	2 cut(s)	1827, 2572
BsmBI	CGTCTC	1 cut(s)	1827
BsmFI	GGGAC	3 cut(s)	2642, 2692, 3052
BsmI	GAATGC	3 cut(s)	1842, 2551, 2971
BsnI	GGCC	6 cut(s)	87, 777, 1684, 2654, 2684, 3464
BsoBI	CYCGRG	3 cut(s)	483, 2604, 3264
Bsp119I	TTCGAA	1 cut(s)	3587
Bsp1286I	GDGCHC	3 cut(s)	52, 1902, 2521
Bsp1720I	GCTNAGC	1 cut(s)	51
Bsp19I	CCATGG	2 cut(s)	102, 3465
BspACI	CCGC	6 cut(s)	1468, 1553, 2723, 2903, 2917, 3643
BspANI	GGCC	6 cut(s)	87, 777, 1684, 2654, 2684, 3464
BspCNI	CTCAG	5 cut(s)	64, 1699, 2545, 2741, 3055
BspFNI	CGCG	1 cut(s)	1279
BspHI	TCATGA	4 cut(s)	600, 1918, 2961, 3668
BspLI	GGNNCC	4 cut(s)	587, 751, 2630, 3330
BspMI	ACCTGC	1 cut(s)	2462
BspOI	GCTAGC	1 cut(s)	912
BspPI	GGATC	2 cut(s)	417, 3407
BspQI	GCTCTTC	1 cut(s)	2604
BspT104I	TTCGAA	1 cut(s)	3587
BspT107I	GGYRCC	1 cut(s)	749
BspTI	CTTAAG	1 cut(s)	1417
BsrBI	CCGCTC	1 cut(s)	3643
BsrDI	GCAATG	1 cut(s)	2101
BsrFI	RCCGGY	3 cut(s)	256, 2378, 3651
BsrI	ACTGG	7 cut(s)	351, 644, 1009, 1661, 2083, 2225, 3111
BssAI	RCCGGY	3 cut(s)	256, 2378, 3651
BssECI	CCNNGG	8 cut(s)	102, 428, 483, 1213, 1679, 3264, 3465, 3522
BssNI	GRCGYC	1 cut(s)	1513
BssSI	CACGAG	1 cut(s)	3207
BssT1I	CCWWGG	3 cut(s)	102, 3465, 3522
Bst2BI	CACGAG	1 cut(s)	3207
Bst2UI	CCWGG	3 cut(s)	2151, 3171, 3608
Bst4CI	ACNGT	9 cut(s)	1795, 1812, 1882, 2164, 2193, 2990, 3106, 3370, 3593
Bst6I	CTCTTC	4 cut(s)	1293, 2277, 2604, 3404
BstACI	GRCGYC	1 cut(s)	1513
BstAFI	CTTAAG	1 cut(s)	1417
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstBI	TTCGAA	1 cut(s)	3587
BstC8I	GCNNGC	5 cut(s)	910, 1735, 2423, 2438, 2919
BstDEI	CTNAG	8 cut(s)	51, 1184, 1686, 2129, 2553, 2649, 2728, 3042
BstDSI	CCRYGG	3 cut(s)	102, 1213, 3465
BstEII	GGTNACC	1 cut(s)	1208
BstF5I	GGATG	9 cut(s)	355, 547, 694, 1237, 1557, 2413, 3022, 3190, 3518
BstFNI	CGCG	1 cut(s)	1279
BstHHI	GCGC	2 cut(s)	1002, 1281
BstMAI	GTCTC	2 cut(s)	1827, 2572
BstMCI	CGRYCG	1 cut(s)	2685
BstMWI	GCNNNNNNNGC	7 cut(s)	160, 867, 1256, 1285, 1436, 1499, 2000
BstNI	CCWGG	3 cut(s)	2151, 3171, 3608
BstNSI	RCATGY	3 cut(s)	1000, 1941, 2771
BstPI	GGTNACC	1 cut(s)	1208
BstSCI	CCNGG	7 cut(s)	482, 483, 2149, 3169, 3263, 3264, 3606
BstSFI	CTRYAG	2 cut(s)	1998, 2368
BstUI	CGCG	1 cut(s)	1279
BstV1I	GCAGC	1 cut(s)	1486
BstV2I	GAAGAC	7 cut(s)	101, 140, 402, 869, 2187, 3555, 3609
BstX2I	RGATCY	4 cut(s)	532, 783, 1567, 3399
BstXI	CCANNNNNNTGG	2 cut(s)	1096, 3493
BstYI	RGATCY	4 cut(s)	532, 783, 1567, 3399
BstZI	CGGCCG	1 cut(s)	2682
Bsu36I	CCTNAGG	1 cut(s)	1686
BsuI	GTATCC	1 cut(s)	1693
BsuRI	GGCC	6 cut(s)	87, 777, 1684, 2654, 2684, 3464
BtgI	CCRYGG	3 cut(s)	102, 1213, 3465
BtgZI	GCGATG	1 cut(s)	2577
BtsCI	GGATG	9 cut(s)	355, 547, 694, 1237, 1557, 2413, 3022, 3190, 3518
BtsIMutI	CAGTG	5 cut(s)	651, 1668, 2160, 3118, 3366
BveI	ACCTGC	1 cut(s)	2462
Cac8I	GCNNGC	5 cut(s)	910, 1735, 2423, 2438, 2919
CaiI	CAGNNNCTG	2 cut(s)	2390, 3597
CciI	TCATGA	4 cut(s)	600, 1918, 2961, 3668
CfoI	GCGC	2 cut(s)	1002, 1281
Cfr10I	RCCGGY	3 cut(s)	256, 2378, 3651
Cfr13I	GGNCC	3 cut(s)	85, 2629, 3328
Cfr9I	CCCGGG	2 cut(s)	483, 3264
Csp6I	GTAC	3 cut(s)	938, 1543, 2837
CspAI	ACCGGT	2 cut(s)	256, 3651
CspCI	CAANNNNNGTGG	4 cut(s)	1242, 1277, 1283, 1318
CviQI	GTAC	3 cut(s)	938, 1543, 2837
DdeI	CTNAG	8 cut(s)	51, 1184, 1686, 2129, 2553, 2649, 2728, 3042
DraI	TTTAAA	1 cut(s)	991
DriI	GACNNNNNGTC	1 cut(s)	3479
EaeI	YGGCCR	1 cut(s)	2682
EagI	CGGCCG	1 cut(s)	2682
Eam1104I	CTCTTC	4 cut(s)	1293, 2277, 2604, 3404
Eam1105I	GACNNNNNGTC	1 cut(s)	3479
EarI	CTCTTC	4 cut(s)	1293, 2277, 2604, 3404
EclXI	CGGCCG	1 cut(s)	2682
Eco130I	CCWWGG	3 cut(s)	102, 3465, 3522
Eco24I	GRGCYC	2 cut(s)	52, 1902
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	2629, 3328
Eco52I	CGGCCG	1 cut(s)	2682
Eco57I	CTGAAG	4 cut(s)	216, 954, 1725, 2694
Eco81I	CCTNAGG	1 cut(s)	1686
Eco88I	CYCGRG	3 cut(s)	483, 2604, 3264
Eco91I	GGTNACC	1 cut(s)	1208
EcoO65I	GGTNACC	1 cut(s)	1208
EcoRI	GAATTC	1 cut(s)	1535
EcoRII	CCWGG	3 cut(s)	2149, 3169, 3606
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	3 cut(s)	102, 3465, 3522
EcoT22I	ATGCAT	2 cut(s)	1996, 3151
EcoT38I	GRGCYC	2 cut(s)	52, 1902
ErhI	CCWWGG	3 cut(s)	102, 3465, 3522
Esp3I	CGTCTC	1 cut(s)	1827
FalI	AAGNNNNNCTT	2 cut(s)	3568, 3600
FaqI	GGGAC	3 cut(s)	2642, 2692, 3052
FauI	CCCGC	1 cut(s)	2910
FauNDI	CATATG	1 cut(s)	3532
FbaI	TGATCA	2 cut(s)	946, 1375
Fnu4HI	GCNGC	1 cut(s)	1500
FokI	GGATG	9 cut(s)	362, 554, 701, 1244, 1544, 2420, 3029, 3197, 3505
FriOI	GRGCYC	2 cut(s)	52, 1902
Fsp4HI	GCNGC	1 cut(s)	1500
FspBI	CTAG	9 cut(s)	63, 342, 909, 1256, 2220, 2955, 3162, 3612, 3621
FspI	TGCGCA	1 cut(s)	1001
GlaI	GCGC	2 cut(s)	1001, 1280
GluI	GCNGC	1 cut(s)	1500
GsuI	CTGGAG	2 cut(s)	2037, 3515
HaeIII	GGCC	6 cut(s)	87, 777, 1684, 2654, 2684, 3464
HapII	CCGG	7 cut(s)	257, 484, 798, 2379, 3265, 3652, 3663
HhaI	GCGC	2 cut(s)	1002, 1281
Hin1I	GRCGYC	1 cut(s)	1513
Hin6I	GCGC	2 cut(s)	1000, 1279
HinP1I	GCGC	2 cut(s)	1000, 1279
HincII	GTYRAC	2 cut(s)	1120, 2701
HindII	GTYRAC	2 cut(s)	1120, 2701
HindIII	AAGCTT	1 cut(s)	3083
HpaII	CCGG	7 cut(s)	257, 484, 798, 2379, 3265, 3652, 3663
Hpy166II	GTNNAC	2 cut(s)	1120, 2701
Hpy8I	GTNNAC	2 cut(s)	1120, 2701
Hpy99I	CGWCG	1 cut(s)	415
HpyCH4III	ACNGT	9 cut(s)	1795, 1812, 1882, 2164, 2193, 2990, 3106, 3370, 3593
HpyCH4IV	ACGT	3 cut(s)	157, 1513, 2734
HpyF10VI	GCNNNNNNNGC	7 cut(s)	160, 867, 1256, 1285, 1436, 1499, 2000
HpyF3I	CTNAG	8 cut(s)	51, 1184, 1686, 2129, 2553, 2649, 2728, 3042
HpySE526I	ACGT	3 cut(s)	157, 1513, 2734
Hsp92I	GRCGYC	1 cut(s)	1513
HspAI	GCGC	2 cut(s)	1000, 1279
Ksp22I	TGATCA	2 cut(s)	946, 1375
LguI	GCTCTTC	1 cut(s)	2604
LmnI	GCTCC	6 cut(s)	384, 1255, 1889, 2086, 2243, 3102
Lsp1109I	GCAGC	1 cut(s)	1486
LweI	GCATC	7 cut(s)	298, 1540, 2003, 2458, 2482, 2677, 2930
MaeI	CTAG	9 cut(s)	63, 342, 909, 1256, 2220, 2955, 3162, 3612, 3621
MaeII	ACGT	3 cut(s)	157, 1513, 2734
MaeIII	GTNAC	8 cut(s)	250, 961, 1081, 1208, 1368, 1795, 2181, 2267
MbiI	CCGCTC	1 cut(s)	3643
MflI	RGATCY	4 cut(s)	532, 783, 1567, 3399
MhlI	GDGCHC	3 cut(s)	52, 1902, 2521
MlyI	GAGTC	8 cut(s)	49, 352, 409, 1079, 1400, 2294, 2795, 3034
MmeI	TCCRAC	2 cut(s)	1602, 3163
Mph1103I	ATGCAT	2 cut(s)	1996, 3151
MroXI	GAANNNNTTC	4 cut(s)	1842, 2736, 2824, 3583
MslI	CAYNNNNRTG	3 cut(s)	248, 2274, 3201
MspA1I	CMGCKG	1 cut(s)	2903
MspCI	CTTAAG	1 cut(s)	1417
MspI	CCGG	7 cut(s)	257, 484, 798, 2379, 3265, 3652, 3663
MspR9I	CCNGG	7 cut(s)	484, 485, 2151, 3171, 3265, 3266, 3608
Mva1269I	GAATGC	3 cut(s)	1842, 2551, 2971
MvaI	CCWGG	3 cut(s)	2151, 3171, 3608
MvnI	CGCG	1 cut(s)	1279
MwoI	GCNNNNNNNGC	7 cut(s)	160, 867, 1256, 1285, 1436, 1499, 2000
NciI	CCSGG	4 cut(s)	484, 485, 3265, 3266
NcoI	CCATGG	2 cut(s)	102, 3465
NdeI	CATATG	1 cut(s)	3532
NheI	GCTAGC	1 cut(s)	908
NlaIV	GGNNCC	4 cut(s)	587, 751, 2630, 3330
NmeAIII	GCCGAG	2 cut(s)	1660, 2680
NmuCI	GTSAC	5 cut(s)	250, 1208, 1368, 1795, 2267
NsbI	TGCGCA	1 cut(s)	1001
NsiI	ATGCAT	2 cut(s)	1996, 3151
NspI	RCATGY	3 cut(s)	1000, 1941, 2771
NspV	TTCGAA	1 cut(s)	3587
PaeR7I	CTCGAG	1 cut(s)	2604
PagI	TCATGA	4 cut(s)	600, 1918, 2961, 3668
PaqCI	CACCTGC	1 cut(s)	2462
PciI	ACATGT	2 cut(s)	1937, 2767
PciSI	GCTCTTC	1 cut(s)	2604
PcsI	WCGNNNNNNNCGW	1 cut(s)	2611
PctI	GAATGC	3 cut(s)	1842, 2551, 2971
PdmI	GAANNNNTTC	4 cut(s)	1842, 2736, 2824, 3583
PfeI	GAWTC	8 cut(s)	116, 1144, 1180, 2213, 2579, 2825, 2945, 2958
PflFI	GACNNNGTC	1 cut(s)	3043
PflMI	CCANNNNNTGG	3 cut(s)	1667, 2207, 2408
PinAI	ACCGGT	2 cut(s)	256, 3651
PkrI	GCNGC	1 cut(s)	1501
PleI	GAGTC	8 cut(s)	48, 352, 409, 1078, 1400, 2293, 2795, 3034
PpsI	GAGTC	8 cut(s)	48, 352, 409, 1078, 1400, 2293, 2795, 3034
PscI	ACATGT	2 cut(s)	1937, 2767
PshBI	ATTAAT	1 cut(s)	828
Psp1406I	AACGTT	1 cut(s)	2734
Psp6I	CCWGG	3 cut(s)	2149, 3169, 3606
PspEI	GGTNACC	1 cut(s)	1208
PspGI	CCWGG	3 cut(s)	2149, 3169, 3606
PspN4I	GGNNCC	4 cut(s)	587, 751, 2630, 3330
PspPI	GGNCC	3 cut(s)	85, 2629, 3328
PsrI	GAACNNNNNNTAC	2 cut(s)	2724, 2756
PstNI	CAGNNNCTG	2 cut(s)	2390, 3597
PsuI	RGATCY	4 cut(s)	532, 783, 1567, 3399
PsyI	GACNNNGTC	1 cut(s)	3043
RsaI	GTAC	3 cut(s)	939, 1544, 2838
RsaNI	GTAC	3 cut(s)	938, 1543, 2837
RseI	CAYNNNNRTG	3 cut(s)	248, 2274, 3201
SapI	GCTCTTC	1 cut(s)	2604
SatI	GCNGC	1 cut(s)	1500
Sau96I	GGNCC	3 cut(s)	85, 2629, 3328
ScaI	AGTACT	1 cut(s)	939
SchI	GAGTC	8 cut(s)	49, 352, 409, 1079, 1400, 2294, 2795, 3034
ScrFI	CCNGG	7 cut(s)	484, 485, 2151, 3171, 3265, 3266, 3608
SduI	GDGCHC	3 cut(s)	52, 1902, 2521
SfaNI	GCATC	7 cut(s)	298, 1540, 2003, 2458, 2482, 2677, 2930
SfcI	CTRYAG	2 cut(s)	1998, 2368
Sfr274I	CTCGAG	1 cut(s)	2604
SfuI	TTCGAA	1 cut(s)	3587
SinI	GGWCC	2 cut(s)	2629, 3328
SlaI	CTCGAG	1 cut(s)	2604
SmaI	CCCGGG	2 cut(s)	485, 3266
SmiMI	CAYNNNNRTG	3 cut(s)	248, 2274, 3201
SmlI	CTYRAG	5 cut(s)	1417, 1655, 2177, 2604, 2803
SmoI	CTYRAG	5 cut(s)	1417, 1655, 2177, 2604, 2803
SpeI	ACTAGT	1 cut(s)	62
SsiI	CCGC	6 cut(s)	1468, 1553, 2723, 2903, 2917, 3643
SspI	AATATT	2 cut(s)	812, 1589
SspMI	CTAG	9 cut(s)	63, 342, 909, 1256, 2220, 2955, 3162, 3612, 3621
StyD4I	CCNGG	7 cut(s)	482, 483, 2149, 3169, 3263, 3264, 3606
StyI	CCWWGG	3 cut(s)	102, 3465, 3522
TaaI	ACNGT	9 cut(s)	1795, 1812, 1882, 2164, 2193, 2990, 3106, 3370, 3593
TaiI	ACGT	3 cut(s)	160, 1516, 2737
TaqI	TCGA	7 cut(s)	410, 673, 1539, 1823, 2605, 3025, 3587
TaqII	GACCGA	1 cut(s)	1154
TatI	WGTACW	2 cut(s)	937, 2836
TfiI	GAWTC	8 cut(s)	116, 1144, 1180, 2213, 2579, 2825, 2945, 2958
TscAI	CASTG	5 cut(s)	651, 1668, 2167, 3118, 3373
TseFI	GTSAC	5 cut(s)	250, 1208, 1368, 1795, 2267
TseI	GCWGC	1 cut(s)	1499
Tsp45I	GTSAC	5 cut(s)	250, 1208, 1368, 1795, 2267
TspGWI	ACGGA	2 cut(s)	1142, 2718
TspMI	CCCGGG	2 cut(s)	483, 3264
TspRI	CASTG	5 cut(s)	651, 1668, 2167, 3118, 3373
Tth111I	GACNNNGTC	1 cut(s)	3043
Van91I	CCANNNNNTGG	3 cut(s)	1667, 2207, 2408
Vha464I	CTTAAG	1 cut(s)	1417
VpaK11BI	GGWCC	2 cut(s)	2629, 3328
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	7 cut(s)	225, 554, 1528, 1535, 1801, 1816, 3008
XbaI	TCTAGA	1 cut(s)	3161
XceI	RCATGY	3 cut(s)	1000, 1941, 2771
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1432, 3118
XhoI	CTCGAG	1 cut(s)	2604
XmaI	CCCGGG	2 cut(s)	483, 3264
XmnI	GAANNNNTTC	4 cut(s)	1842, 2736, 2824, 3583
XspI	CTAG	9 cut(s)	63, 342, 909, 1256, 2220, 2955, 3162, 3612, 3621
ZraI	GACGTC	1 cut(s)	1514
ZrmI	AGTACT	1 cut(s)	939
Zsp2I	ATGCAT	2 cut(s)	1996, 3151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.