Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002013

Physical Location & Seq

Genomic Coordinates Reverse (-)

65497583 .. 65506463

Gene Structure 8881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41253

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4326 bp

ATGAAGAGGTCTCGTGACGACGGTTATACAAGTTCGCAAGTTAAACGGCCCATGGTTACCTCTCGAGGCGAGCCCTCGGGGCAGCCGCAGATGATGACAGCAACAGCTTCCCAGAAACTAACAACCAATGATGCCTTATCATATCTAAAGGCGGTGAAGGAGATATTTGAAAACAACAAGGAAAAATACGAAGACTTTCTTGAAGTTATGAAAGACTTTAAAGCTCAGAGAGTTGACACCTCGGGTGTGATACAGAGGGTAAAGGATTTATTTAAAGGGCATCGAGACCTAATATTAGGCTTCAATACCTTCTTGCCGAAGGGATATGAAATCACTCTCCCTCTCGATGACGAACAACCTCCTCAAAAGAAGCCCGTTGAATTTGAAGAAGCTATCAGTTTTGTCAACAAAATTAAGACTCGATTTCAACATGATGATCATGTTTATAAATCCTTTTTGGACATTTTGAATATGTACAGAAAGGAAAACAAGTCCATCTCTGAAGTTTACCAGGAGGTCTCAGCACTTTTTCAAGACCACCCAGACTTACTTGTGGAGTTTACTCACTTTTTACCTGATACTTCAGCAACAGCCTCCACCCAGTTTGCTCCATCTCAAAGAAACTCAATGCTTCGTGATAGGAGCTCTGCCATGCCCCCTATGAGGCAAATGCATGTTGATAAGAAAGAAAGGCCTATGGGTTCTTACCCTGAGCATGATCTCAGTGTTGACCGTCCTGATCTGGACCATGATAGAGCTCTGATGAAAGCTGAGAAAGAGCAAAGGAGGCGTGGTGAAAAAGAAAAGGAGAGGAGAGAAGACAGAGAAAGACGAGATGATAGGGATTTTGACCATGATGGCAGTAGGGACTTCAACATGCAGCGTTTTCCCCACAAACGGAAATCCACTCGTAGGGGTGAAGACTTGGCTACTGATCAATTGCATCAAGGTGGGGAAGACGATGAAAACCTTGGAGCACATCTCATTTCATCTTCTTATGATGATAAAAATTCTGCAAAAAGTATATATGGCTCGGAGAGTGCCTTCTGTGAGAAGGTGAAGGAGAAGTTACGAAATCCTGATGATTACCAGGAGTTTTTGAAGTGCCTCCATATTTATAGCAAGGAAATTATTACCCGGGCTGAATTGCAGTCATTGGTGGGTGATTTACTTGGAAAATATCCAGATCTTATGGATGGGTTCAATGAATTTTTGTCATGTTGTGAGAAGAAAGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAATCTTTGTGGAATGAAGGCAATCTACCAAGACCAGTGAAGGTAGAGGATAAGGAGAAAGATCGAGATCGTGAAAGGGATGATGTGGTTAGAGATAGAGAGCGTGAAAACCGAGAAAGGGATAGACCTGATAGAAATGGTGCCTTTGGAAATAAAGAAATTGGAGGCCAGAAGATCTCTATATTTTCCGGCAAGGACAAATATTTGGCAAAACCTATTAATGAGCTTGACCTCTCTAATTGTGAGCGTTGCACTCCGAGCTATCGTCTTCTGCCAAAGAATTATCCAATACCTTCTGCTAGCCAAAGAACCGAACTTGGGTCTGAAGTACTAAATGATCATTGGGTGTCTGTTACTTCTGGAAGCGAGGATTATTCTTTTAAACACATGCGCAAAAACCAGTATGAAGAAAGCCTGTTTCGGTGTGAAGATGATAGGTTTGAATTAGATATGCTGTTAGAGTCTGTGAATGTAACAACCAAGCGTGTGGAAGAACTATTAGAGAAGATCAACAACAATACCATTAAGACCGAGAGTCCAATCCGTGTAGAAGAATACTTCACAGCTCTGAATCTAAGGTGTGTTGAGCGATTATATGGTGACCACGGGCTTGATGTAATGGATGTGTTGAGGAAAAATGCTCCACTAGCTTTGCCTGTTATATTAACGCGCTTGAAGCAAAAGCAAGAAGAGTGGGCAAGGTGTCGCTCTGATTTTAACAAAGTCTGGGCTGATATATATGCCAAGAACTACCACAAGTCGCTTGATCATCGTAGCTTCTACTTCAAGCAACAGGACTCAAAGAGCTTAAGCACCAAAGCCTTGTTGGCAGAGATTAAAGAGATGAGTGAGAAGAAGCGGAAGGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGACGTCCTATTATTCCAAATTTGGAATTCGAGTACCCTGATCCGGACATCCATGAAGATCTGTATCAACTCATTAAATATTCTTGTGGAGAAGTTTGCACAACCGAGCAATTGGACAAAGTTATGAAGATATGGACAACCTTCCTTGAGCCAGTGCTTGGTGTTCCTCCTCGGCCTCAGGTTGCAGAGGATACTGAAGATGTTGTGAAGGCAAAAACTCATGCTGGCAAAAATGGTGCTGTGAGTGGGGGAGAGAGTGATGATAATCCTGATGGTGGGGCTACTGTGACAAATTCTAAACAGTTAAATTCATCGAGAAATGGAGACGAAAGCATTCAACCTGAACAATCAAGCTCTGCAAGAGCTTGGACAGTAAATGGAGCTAATGGGCTCAAAGAAGAAAGTTCTCATGATATTGATCGTGCTACATGTAAAGGTGATACTTTCTGCAATACCTCTCAACAAGGTAAAGTGCAAAGTAATGCATCTACAGCCGATGAAATGTCTGGAGTGAGCAAACAAGACAATTTTAATGAACGATTAGTCAATTCTAATGTATCACTTGCTACTGGCTTGGAGCAAAGCAATGGAAGAACTAATGTGGAAAACTCATCAGGTCTTAGTCCTACTCCTTCCAGACCTGGAAATGGCACTGTTGAGGGTGGGCTTGAGTTACCTTCACGGTCTTCACCAGAGGGTGGTGATTCTACTAGACCAGTTATATCCTCAAATGGAGCAATCACAGAAGCCACGAAAGGTCACAGATATGTGGAAGAGTCGGTTAGACACTTCAAGATTGAAAGAGAAGAAGGTGAAATATCTCCAAATGGAGATTTTGAGGAGGATAATTTTGCAAACTATAGAGAAGCCGGTTCAGAGGCTGTTCAAAAACCAAAGGATGGTGTTTCCAGCAGGCAACTTAAAGGCAGGCATGGGGAAGAAGAAATATGTGGTGGAGATGCAGGTGGAGAAAATGAGGCTGATGCTGATGATGAAGGTGAGGAAAGTGCTCATAGATCATCAGAGGATAGTGAGAATGCTTCTGAGAATGGCGATGTCTCTGGAAGTGAATCTGGTGAGGGAGAGGAATGTTCTCGAGAAGAGCGTGAGGAAGATGGGGACCATGATGAGCATGATACTAAGGCCGAGAGTGAAGGTGAAGCTGAAGGGACGGCCGACGCCCATGATGTTGAAGGAGATGGAACTTCTTTACCGCACTCAGAACGTTTTCTACTTTCTGTGAAGCCTCTTGCAAAACATGTTCTTCCAGCTTTACATGACAAGGACAAGGACTCAAGGATTTTCTATGGAAACGATTCTTTCTATGTACTTTTTAGGCTTCACCAAACACTATATGAGAGAATACAATCAGCAAAGATTAACTCGTCATCAGCGGAGAAGAAGTGGCGGGCATCAAATGATACAAGCACTTCTGATTCGTATGCTAGATTCATGAATGCCCTTTACAATTTACTTGACGGTTCTTCTGACAATACAAAATTTGAGGATGATTGTCGAGCTATCATAGGGACTCAGTCATATCTTCTTTTCACATTAGACAAGCTGATCTACAAGCTTGTTAAACAGCTCCAAACAGTCGCCAGTGACGAGATGGATAATAAACTTGTCCAACTATATGCATTTGAAAAATCAAGAAAACCAGGAAGATTTGTGGATGTAGTTTATCACGAAAATGCTCGTGTTCTTCTTCACGATGAGAACATTTATCGCATAGAATGTTTCTCTTTGCCAACCCGGGTGTCTATTCAGCTTATGGATTATGGGAATGATAAGCCTGAAATGACTGCTGTTTCAATGGACCCTAATTTTTCTGCTTATTTGCACAATGATTTTCTCACTGTTCTTCCTGACAAAAGAGAGAAGTCTGGGATCTTCTTGAAGAGGAACAAACGCAAATATGCGAGTTGTGATGATTTGTCTGCTATTTGTCAGGCCATGGAAGGACTTAAAGTCGCCAATGGTCTGGAGTGTAAGATAGCGTGTCATTCATCCAAGGTATCATATGTTTTAGATACAGAAGACTTTTTGTTTCGGACAAAAAGGAGAAGAAAAACTTCGAACAGTTCCTGCCATAACGAGGCTAGGTCTTCTAGTGGTTCAAGTAGAGTAGAGCGGTTTCACCGGTTGCTCTCTGGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1441

Amino Acids

163.5

Weight (kDa)

5.39

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	61 - 105	3e-18	Paired amphipathic helix repeat
PAH	PF02671	147 - 191	2.3e-18	Paired amphipathic helix repeat
PAH	PF02671	362 - 405	1.6e-16	Paired amphipathic helix repeat
Sin3_corepress	PF08295	503 - 595	1.2e-36	Sin3 family co-repressor
Sin3a_C	PF16879	1156 - 1404	1.4e-48	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24190 AT1G24190 AT1G24190 AT1G70060 AT1G70060
fragaria_vesca	FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300
malus_domestica	MD13G1084700.v1.1 MD16G1083700.v1.1
prunus_persica	Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1
pyrus_communis	pycom13g07320 pycom16g07260
rosa_chinensis	RchiOBHm_Chr4g0444901
rosa_laevigata	RLG00000005790
rosa_multiflora	Rmu_sc0006845.1_g000002 Rmu_sc0013783.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385400
rosa_rugosa	Rorug04G0355800 Rorug04G0355900.1 Rorug04G0356000 Rorug04G0356100
rosa_samantha	Rh4AG417700 Rh4BG429500 Rh4CG444200 Rh4DG425400
rosa_wichuraiana	Rw4G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AarI	CACCTGC	1 cut(s)	3116
AatII	GACGTC	1 cut(s)	2170
Acc16I	TGCGCA	1 cut(s)	1655
Acc36I	ACCTGC	1 cut(s)	3116
AccB1I	GGYRCC	1 cut(s)	1403
AccB7I	CCANNNNNTGG	3 cut(s)	2321, 2861, 3062
AccBSI	CCGCTC	1 cut(s)	4297
AccII	CGCG	1 cut(s)	1933
AccIII	TCCGGA	1 cut(s)	2206
AciI	CCGC	7 cut(s)	86, 152, 2122, 3377, 3557, 3571, 4297
AclI	AACGTT	1 cut(s)	3388
AclWI	GGATC	2 cut(s)	2198, 4061
AcoI	YGGCCR	1 cut(s)	3336
AcsI	RAATTY	8 cut(s)	380, 1009, 1208, 2182, 2189, 2455, 2470, 3662
AcuI	CTGAAG	5 cut(s)	522, 567, 1608, 2379, 3348
AcyI	GRCGYC	2 cut(s)	2167, 3342
AfaI	GTAC	4 cut(s)	476, 1593, 2198, 3492
AflII	CTTAAG	1 cut(s)	2071
AflIII	ACRYGT	2 cut(s)	2591, 3421
AgeI	ACCGGT	1 cut(s)	4305
AhdI	GACNNNNNGTC	2 cut(s)	1797, 4133
AjnI	CCWGG	4 cut(s)	510, 1089, 2803, 3823
Alw21I	GWGCWC	4 cut(s)	647, 760, 979, 3175
Alw26I	GTCTC	5 cut(s)	15, 279, 523, 2481, 3226
AlwI	GGATC	2 cut(s)	2198, 4061
AlwNI	CAGNNNCTG	2 cut(s)	3044, 4251
Ama87I	CYCGRG	6 cut(s)	63, 76, 241, 1137, 3258, 3918
Aor13HI	TCCGGA	1 cut(s)	2206
AoxI	GGCC	7 cut(s)	47, 692, 1429, 2336, 3306, 3336, 4116
ApeKI	GCWGC	3 cut(s)	82, 880, 2153
ApoI	RAATTY	8 cut(s)	380, 1009, 1208, 2182, 2189, 2455, 2470, 3662
AseI	ATTAAT	1 cut(s)	1482
AsiGI	ACCGGT	1 cut(s)	4305
Asp700I	GAANNNNTTC	5 cut(s)	195, 2496, 3390, 3478, 4237
AspLEI	GCGC	2 cut(s)	1656, 1935
AspS9I	GGNCC	4 cut(s)	48, 745, 3283, 3982
AsuC2I	CCSGG	4 cut(s)	1138, 1139, 3919, 3920
AsuII	TTCGAA	1 cut(s)	4241
AsuNHI	GCTAGC	1 cut(s)	1562
AvaI	CYCGRG	6 cut(s)	63, 76, 241, 1137, 3258, 3918
AvaII	GGWCC	3 cut(s)	745, 3283, 3982
AxyI	CCTNAGG	1 cut(s)	2340
BanI	GGYRCC	1 cut(s)	1403
BanII	GRGCYC	4 cut(s)	75, 647, 760, 2556
BarI	GAAGNNNNNNTAC	2 cut(s)	1272, 1304
BauI	CACGAG	2 cut(s)	12, 3861
BbsI	GAAGAC	8 cut(s)	198, 825, 927, 963, 1523, 2841, 4209, 4263
Bbv12I	GWGCWC	4 cut(s)	647, 760, 979, 3175
BbvI	GCAGC	3 cut(s)	94, 892, 2140
BceAI	ACGGC	2 cut(s)	62, 3351
BciT130I	CCWGG	4 cut(s)	512, 1091, 2805, 3825
BciVI	GTATCC	1 cut(s)	2347
BclI	TGATCA	4 cut(s)	436, 934, 1600, 2029
BcnI	CCSGG	4 cut(s)	1138, 1139, 3919, 3920
BcoDI	GTCTC	5 cut(s)	15, 279, 523, 2481, 3226
BfaI	CTAG	6 cut(s)	1563, 1910, 2874, 3609, 4266, 4275
BfmI	CTRYAG	2 cut(s)	2652, 3022
BfrI	CTTAAG	1 cut(s)	2071
BfuAI	ACCTGC	1 cut(s)	3116
BfuI	GTATCC	1 cut(s)	2347
BglI	GCCNNNNNGGC	2 cut(s)	79, 2090
BglII	AGATCT	3 cut(s)	1186, 1437, 2221
BisI	GCNGC	4 cut(s)	83, 86, 881, 2154
BlsI	GCNGC	4 cut(s)	84, 87, 882, 2155
BmcAI	AGTACT	1 cut(s)	1593
Bme1390I	CCNGG	8 cut(s)	512, 1091, 1138, 1139, 2805, 3825, 3919, 3920
Bme18I	GGWCC	3 cut(s)	745, 3283, 3982
BmeRI	GACNNNNNGTC	2 cut(s)	1797, 4133
BmeT110I	CYCGRG	6 cut(s)	63, 76, 241, 1137, 3258, 3918
BmgT120I	GGNCC	4 cut(s)	48, 745, 3283, 3982
BmiI	GGNNCC	4 cut(s)	1241, 1405, 3284, 3984
BmrFI	CCNGG	8 cut(s)	512, 1091, 1138, 1139, 2805, 3825, 3919, 3920
BmrI	ACTGGG	1 cut(s)	595
BmsI	GCATC	7 cut(s)	121, 289, 952, 2657, 3112, 3136, 3584
BmtI	GCTAGC	1 cut(s)	1566
BmuI	ACTGGG	1 cut(s)	595
BpiI	GAAGAC	8 cut(s)	198, 825, 927, 963, 1523, 2841, 4209, 4263
BplI	GAGNNNNNCTC	2 cut(s)	966, 998
BpmI	CTGGAG	2 cut(s)	2691, 4169
Bpu10I	CCTNAGC	1 cut(s)	711
Bpu14I	TTCGAA	1 cut(s)	4241
BpuEI	CTTGAG	3 cut(s)	2330, 2852, 3442
BpuMI	CCSGG	4 cut(s)	1138, 1139, 3919, 3920
BsaBI	GATNNNNATC	4 cut(s)	1329, 2226, 2427, 2580
BsaHI	GRCGYC	2 cut(s)	2167, 3342
BsaI	GGTCTC	3 cut(s)	15, 279, 523
BsaWI	WCCGGW	2 cut(s)	2206, 4305
BsaXI	ACNNNNNCTCC	4 cut(s)	778, 808, 3551, 3581
Bse118I	RCCGGY	2 cut(s)	3032, 4305
Bse1I	ACTGG	7 cut(s)	601, 1298, 1663, 2315, 2737, 2879, 3765
Bse21I	CCTNAGG	1 cut(s)	2340
Bse3DI	GCAATG	1 cut(s)	2755
Bse8I	GATNNNNATC	4 cut(s)	1329, 2226, 2427, 2580
BseAI	TCCGGA	1 cut(s)	2206
BseBI	CCWGG	4 cut(s)	512, 1091, 2805, 3825
BseGI	GGATG	8 cut(s)	1201, 1348, 1891, 2211, 3067, 3676, 3844, 4172
BseJI	GATNNNNATC	4 cut(s)	1329, 2226, 2427, 2580
BseMI	GCAATG	1 cut(s)	2755
BseMII	CTCAG	9 cut(s)	239, 534, 702, 736, 762, 2354, 3198, 3396, 3710
BseNI	ACTGG	7 cut(s)	601, 1298, 1663, 2315, 2737, 2879, 3765
BseRI	GAGGAG	4 cut(s)	351, 826, 2322, 3017
BseX3I	CGGCCG	1 cut(s)	3336
BseXI	GCAGC	3 cut(s)	94, 892, 2140
Bsh1236I	CGCG	1 cut(s)	1933
Bsh1285I	CGRYCG	1 cut(s)	3339
BshFI	GGCC	7 cut(s)	49, 694, 1431, 2338, 3308, 3338, 4118
BshNI	GGYRCC	1 cut(s)	1403
BshTI	ACCGGT	1 cut(s)	4305
BsiEI	CGRYCG	1 cut(s)	3339
BsiHKAI	GWGCWC	4 cut(s)	647, 760, 979, 3175
BsiHKCI	CYCGRG	6 cut(s)	63, 76, 241, 1137, 3258, 3918
BsiSI	CCGG	6 cut(s)	1138, 1452, 2207, 3033, 3919, 4306
BslFI	GGGAC	4 cut(s)	881, 3296, 3346, 3706
BsmAI	GTCTC	5 cut(s)	15, 279, 523, 2481, 3226
BsmBI	CGTCTC	1 cut(s)	2481
BsmFI	GGGAC	4 cut(s)	881, 3296, 3346, 3706
BsmI	GAATGC	3 cut(s)	2496, 3205, 3625
BsnI	GGCC	7 cut(s)	49, 694, 1431, 2338, 3308, 3338, 4118
Bso31I	GGTCTC	3 cut(s)	15, 279, 523
BsoBI	CYCGRG	6 cut(s)	63, 76, 241, 1137, 3258, 3918
Bsp119I	TTCGAA	1 cut(s)	4241
Bsp1286I	GDGCHC	6 cut(s)	75, 647, 760, 979, 2556, 3175
Bsp13I	TCCGGA	1 cut(s)	2206
Bsp1407I	TGTACA	1 cut(s)	474
Bsp19I	CCATGG	2 cut(s)	51, 4119
BspACI	CCGC	7 cut(s)	86, 152, 2122, 3377, 3557, 3571, 4297
BspANI	GGCC	7 cut(s)	49, 694, 1431, 2338, 3308, 3338, 4118
BspCNI	CTCAG	9 cut(s)	238, 533, 703, 735, 763, 2353, 3199, 3395, 3709
BspEI	TCCGGA	1 cut(s)	2206
BspFNI	CGCG	1 cut(s)	1933
BspHI	TCATGA	4 cut(s)	1254, 2572, 3615, 4322
BspLI	GGNNCC	4 cut(s)	1241, 1405, 3284, 3984
BspMI	ACCTGC	1 cut(s)	3116
BspOI	GCTAGC	1 cut(s)	1566
BspPI	GGATC	2 cut(s)	2198, 4061
BspQI	GCTCTTC	1 cut(s)	3258
BspT104I	TTCGAA	1 cut(s)	4241
BspT107I	GGYRCC	1 cut(s)	1403
BspTI	CTTAAG	1 cut(s)	2071
BspTNI	GGTCTC	3 cut(s)	15, 279, 523
BsrBI	CCGCTC	1 cut(s)	4297
BsrDI	GCAATG	1 cut(s)	2755
BsrFI	RCCGGY	2 cut(s)	3032, 4305
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	7 cut(s)	601, 1298, 1663, 2315, 2737, 2879, 3765
BssAI	RCCGGY	2 cut(s)	3032, 4305
BssNI	GRCGYC	2 cut(s)	2167, 3342
BssSI	CACGAG	2 cut(s)	12, 3861
BssT1I	CCWWGG	4 cut(s)	51, 970, 4119, 4176
Bst2BI	CACGAG	2 cut(s)	12, 3861
Bst2UI	CCWGG	4 cut(s)	512, 1091, 2805, 3825
Bst6I	CTCTTC	4 cut(s)	1947, 2931, 3258, 4058
BstACI	GRCGYC	2 cut(s)	2167, 3342
BstAFI	CTTAAG	1 cut(s)	2071
BstAUI	TGTACA	1 cut(s)	474
BstBI	TTCGAA	1 cut(s)	4241
BstC8I	GCNNGC	6 cut(s)	71, 1564, 2389, 3077, 3092, 3573
BstDSI	CCRYGG	3 cut(s)	51, 1867, 4119
BstEII	GGTNACC	2 cut(s)	55, 1862
BstF5I	GGATG	8 cut(s)	1201, 1348, 1891, 2211, 3067, 3676, 3844, 4172
BstFNI	CGCG	1 cut(s)	1933
BstHHI	GCGC	2 cut(s)	1656, 1935
BstMAI	GTCTC	5 cut(s)	15, 279, 523, 2481, 3226
BstMCI	CGRYCG	1 cut(s)	3339
BstMWI	GCNNNNNNNGC	8 cut(s)	79, 787, 1521, 1910, 1939, 2090, 2153, 2654
BstNI	CCWGG	4 cut(s)	512, 1091, 2805, 3825
BstNSI	RCATGY	5 cut(s)	677, 880, 1654, 2595, 3425
BstPI	GGTNACC	2 cut(s)	55, 1862
BstSCI	CCNGG	8 cut(s)	510, 1089, 1136, 1137, 2803, 3823, 3917, 3918
BstSFI	CTRYAG	2 cut(s)	2652, 3022
BstUI	CGCG	1 cut(s)	1933
BstV1I	GCAGC	3 cut(s)	94, 892, 2140
BstV2I	GAAGAC	8 cut(s)	198, 825, 927, 963, 1523, 2841, 4209, 4263
BstX2I	RGATCY	4 cut(s)	1186, 1437, 2221, 4053
BstXI	CCANNNNNNTGG	2 cut(s)	1750, 4147
BstYI	RGATCY	4 cut(s)	1186, 1437, 2221, 4053
BstZI	CGGCCG	1 cut(s)	3336
Bsu36I	CCTNAGG	1 cut(s)	2340
BsuI	GTATCC	1 cut(s)	2347
BsuRI	GGCC	7 cut(s)	49, 694, 1431, 2338, 3308, 3338, 4118
BtgI	CCRYGG	3 cut(s)	51, 1867, 4119
BtgZI	GCGATG	1 cut(s)	3231
BtsCI	GGATG	8 cut(s)	1201, 1348, 1891, 2211, 3067, 3676, 3844, 4172
BtsIMutI	CAGTG	6 cut(s)	730, 1305, 2322, 2814, 3772, 4020
BveI	ACCTGC	1 cut(s)	3116
Cac8I	GCNNGC	6 cut(s)	71, 1564, 2389, 3077, 3092, 3573
CaiI	CAGNNNCTG	2 cut(s)	3044, 4251
CciI	TCATGA	4 cut(s)	1254, 2572, 3615, 4322
CfoI	GCGC	2 cut(s)	1656, 1935
Cfr10I	RCCGGY	2 cut(s)	3032, 4305
Cfr13I	GGNCC	4 cut(s)	48, 745, 3283, 3982
Cfr9I	CCCGGG	2 cut(s)	1137, 3918
CseI	GACGC	1 cut(s)	3350
Csp6I	GTAC	4 cut(s)	475, 1592, 2197, 3491
CspAI	ACCGGT	1 cut(s)	4305
CspCI	CAANNNNNGTGG	6 cut(s)	586, 621, 1896, 1931, 1937, 1972
CviQI	GTAC	4 cut(s)	475, 1592, 2197, 3491
DraI	TTTAAA	3 cut(s)	220, 274, 1645
DriI	GACNNNNNGTC	2 cut(s)	1797, 4133
EaeI	YGGCCR	1 cut(s)	3336
EagI	CGGCCG	1 cut(s)	3336
Eam1104I	CTCTTC	4 cut(s)	1947, 2931, 3258, 4058
Eam1105I	GACNNNNNGTC	2 cut(s)	1797, 4133
EarI	CTCTTC	4 cut(s)	1947, 2931, 3258, 4058
Ecl136II	GAGCTC	2 cut(s)	645, 758
EclXI	CGGCCG	1 cut(s)	3336
Eco130I	CCWWGG	4 cut(s)	51, 970, 4119, 4176
Eco147I	AGGCCT	1 cut(s)	694
Eco24I	GRGCYC	4 cut(s)	75, 647, 760, 2556
Eco31I	GGTCTC	3 cut(s)	15, 279, 523
Eco47I	GGWCC	3 cut(s)	745, 3283, 3982
Eco52I	CGGCCG	1 cut(s)	3336
Eco53kI	GAGCTC	2 cut(s)	645, 758
Eco57I	CTGAAG	5 cut(s)	522, 567, 1608, 2379, 3348
Eco81I	CCTNAGG	1 cut(s)	2340
Eco88I	CYCGRG	6 cut(s)	63, 76, 241, 1137, 3258, 3918
Eco91I	GGTNACC	2 cut(s)	55, 1862
EcoICRI	GAGCTC	2 cut(s)	645, 758
EcoO65I	GGTNACC	2 cut(s)	55, 1862
EcoRI	GAATTC	1 cut(s)	2189
EcoRII	CCWGG	4 cut(s)	510, 1089, 2803, 3823
EcoT14I	CCWWGG	4 cut(s)	51, 970, 4119, 4176
EcoT22I	ATGCAT	3 cut(s)	675, 2650, 3805
EcoT38I	GRGCYC	4 cut(s)	75, 647, 760, 2556
ErhI	CCWWGG	4 cut(s)	51, 970, 4119, 4176
Esp3I	CGTCTC	1 cut(s)	2481
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 4222, 4254
FaqI	GGGAC	4 cut(s)	881, 3296, 3346, 3706
FauI	CCCGC	1 cut(s)	3564
FauNDI	CATATG	1 cut(s)	4186
FbaI	TGATCA	4 cut(s)	436, 934, 1600, 2029
Fnu4HI	GCNGC	4 cut(s)	83, 86, 881, 2154
FokI	GGATG	8 cut(s)	1208, 1355, 1898, 2198, 3074, 3683, 3851, 4159
FriOI	GRGCYC	4 cut(s)	75, 647, 760, 2556
Fsp4HI	GCNGC	4 cut(s)	83, 86, 881, 2154
FspBI	CTAG	6 cut(s)	1563, 1910, 2874, 3609, 4266, 4275
FspI	TGCGCA	1 cut(s)	1655
GlaI	GCGC	2 cut(s)	1655, 1934
GluI	GCNGC	4 cut(s)	83, 86, 881, 2154
GsuI	CTGGAG	2 cut(s)	2691, 4169
HaeIII	GGCC	7 cut(s)	49, 694, 1431, 2338, 3308, 3338, 4118
HapII	CCGG	6 cut(s)	1138, 1452, 2207, 3033, 3919, 4306
HgaI	GACGC	1 cut(s)	3350
HhaI	GCGC	2 cut(s)	1656, 1935
Hin1I	GRCGYC	2 cut(s)	2167, 3342
Hin6I	GCGC	2 cut(s)	1654, 1933
HinP1I	GCGC	2 cut(s)	1654, 1933
HincII	GTYRAC	3 cut(s)	235, 406, 730
HindII	GTYRAC	3 cut(s)	235, 406, 730
HindIII	AAGCTT	1 cut(s)	3737
HpaII	CCGG	6 cut(s)	1138, 1452, 2207, 3033, 3919, 4306
Hpy166II	GTNNAC	5 cut(s)	235, 406, 508, 561, 730
Hpy8I	GTNNAC	5 cut(s)	235, 406, 508, 561, 730
Hpy99I	CGWCG	2 cut(s)	23, 3344
HpyCH4IV	ACGT	2 cut(s)	2167, 3388
HpyF10VI	GCNNNNNNNGC	8 cut(s)	79, 787, 1521, 1910, 1939, 2090, 2153, 2654
HpySE526I	ACGT	2 cut(s)	2167, 3388
Hsp92I	GRCGYC	2 cut(s)	2167, 3342
HspAI	GCGC	2 cut(s)	1654, 1933
Kpn2I	TCCGGA	1 cut(s)	2206
Ksp22I	TGATCA	4 cut(s)	436, 934, 1600, 2029
LguI	GCTCTTC	1 cut(s)	3258
LmnI	GCTCC	8 cut(s)	613, 642, 974, 1909, 2543, 2740, 2897, 3756
Lsp1109I	GCAGC	3 cut(s)	94, 892, 2140
LweI	GCATC	7 cut(s)	121, 289, 952, 2657, 3112, 3136, 3584
MaeI	CTAG	6 cut(s)	1563, 1910, 2874, 3609, 4266, 4275
MaeII	ACGT	2 cut(s)	2167, 3388
MbiI	CCGCTC	1 cut(s)	4297
MfeI	CAATTG	2 cut(s)	938, 2273
MflI	RGATCY	4 cut(s)	1186, 1437, 2221, 4053
MhlI	GDGCHC	6 cut(s)	75, 647, 760, 979, 2556, 3175
MlyI	GAGTC	7 cut(s)	412, 1733, 1807, 2054, 2948, 3449, 3688
MmeI	TCCRAC	1 cut(s)	3817
Mph1103I	ATGCAT	3 cut(s)	675, 2650, 3805
MroI	TCCGGA	1 cut(s)	2206
MroXI	GAANNNNTTC	5 cut(s)	195, 2496, 3390, 3478, 4237
MslI	CAYNNNNRTG	3 cut(s)	948, 2928, 3855
MspA1I	CMGCKG	1 cut(s)	3557
MspCI	CTTAAG	1 cut(s)	2071
MspI	CCGG	6 cut(s)	1138, 1452, 2207, 3033, 3919, 4306
MspR9I	CCNGG	8 cut(s)	512, 1091, 1138, 1139, 2805, 3825, 3919, 3920
MunI	CAATTG	2 cut(s)	938, 2273
Mva1269I	GAATGC	3 cut(s)	2496, 3205, 3625
MvaI	CCWGG	4 cut(s)	512, 1091, 2805, 3825
MvnI	CGCG	1 cut(s)	1933
MwoI	GCNNNNNNNGC	8 cut(s)	79, 787, 1521, 1910, 1939, 2090, 2153, 2654
NciI	CCSGG	4 cut(s)	1138, 1139, 3919, 3920
NcoI	CCATGG	2 cut(s)	51, 4119
NdeI	CATATG	1 cut(s)	4186
NheI	GCTAGC	1 cut(s)	1562
NlaIV	GGNNCC	4 cut(s)	1241, 1405, 3284, 3984
NmeAIII	GCCGAG	2 cut(s)	2314, 3334
NmuCI	GTSAC	5 cut(s)	14, 1862, 2449, 2921, 3767
NsbI	TGCGCA	1 cut(s)	1655
NsiI	ATGCAT	3 cut(s)	675, 2650, 3805
NspI	RCATGY	5 cut(s)	677, 880, 1654, 2595, 3425
NspV	TTCGAA	1 cut(s)	4241
PaeR7I	CTCGAG	2 cut(s)	63, 3258
PagI	TCATGA	4 cut(s)	1254, 2572, 3615, 4322
PaqCI	CACCTGC	1 cut(s)	3116
PceI	AGGCCT	1 cut(s)	694
PciI	ACATGT	2 cut(s)	2591, 3421
PciSI	GCTCTTC	1 cut(s)	3258
PcsI	WCGNNNNNNNCGW	2 cut(s)	3265, 3768
PctI	GAATGC	3 cut(s)	2496, 3205, 3625
PdmI	GAANNNNTTC	5 cut(s)	195, 2496, 3390, 3478, 4237
PfeI	GAWTC	6 cut(s)	1834, 2867, 3233, 3479, 3599, 3612
PflFI	GACNNNGTC	1 cut(s)	3697
PflMI	CCANNNNNTGG	3 cut(s)	2321, 2861, 3062
PinAI	ACCGGT	1 cut(s)	4305
PkrI	GCNGC	4 cut(s)	84, 87, 882, 2155
PleI	GAGTC	7 cut(s)	412, 1732, 1806, 2054, 2947, 3449, 3688
PpsI	GAGTC	7 cut(s)	412, 1732, 1806, 2054, 2947, 3449, 3688
PscI	ACATGT	2 cut(s)	2591, 3421
PshBI	ATTAAT	1 cut(s)	1482
PsiI	TTATAA	1 cut(s)	447
Psp124BI	GAGCTC	2 cut(s)	647, 760
Psp1406I	AACGTT	1 cut(s)	3388
Psp6I	CCWGG	4 cut(s)	510, 1089, 2803, 3823
PspEI	GGTNACC	2 cut(s)	55, 1862
PspGI	CCWGG	4 cut(s)	510, 1089, 2803, 3823
PspN4I	GGNNCC	4 cut(s)	1241, 1405, 3284, 3984
PspPI	GGNCC	4 cut(s)	48, 745, 3283, 3982
PsrI	GAACNNNNNNTAC	2 cut(s)	3378, 3410
PstNI	CAGNNNCTG	2 cut(s)	3044, 4251
PsuI	RGATCY	4 cut(s)	1186, 1437, 2221, 4053
PsyI	GACNNNGTC	1 cut(s)	3697
RsaI	GTAC	4 cut(s)	476, 1593, 2198, 3492
RsaNI	GTAC	4 cut(s)	475, 1592, 2197, 3491
RseI	CAYNNNNRTG	3 cut(s)	948, 2928, 3855
SacI	GAGCTC	2 cut(s)	647, 760
SapI	GCTCTTC	1 cut(s)	3258
SatI	GCNGC	4 cut(s)	83, 86, 881, 2154
Sau96I	GGNCC	4 cut(s)	48, 745, 3283, 3982
ScaI	AGTACT	1 cut(s)	1593
SchI	GAGTC	7 cut(s)	412, 1733, 1807, 2054, 2948, 3449, 3688
ScrFI	CCNGG	8 cut(s)	512, 1091, 1138, 1139, 2805, 3825, 3919, 3920
SduI	GDGCHC	6 cut(s)	75, 647, 760, 979, 2556, 3175
SfaNI	GCATC	7 cut(s)	121, 289, 952, 2657, 3112, 3136, 3584
SfcI	CTRYAG	2 cut(s)	2652, 3022
Sfr274I	CTCGAG	2 cut(s)	63, 3258
SfuI	TTCGAA	1 cut(s)	4241
SinI	GGWCC	3 cut(s)	745, 3283, 3982
SlaI	CTCGAG	2 cut(s)	63, 3258
SmaI	CCCGGG	2 cut(s)	1139, 3920
SmiMI	CAYNNNNRTG	3 cut(s)	948, 2928, 3855
SmlI	CTYRAG	6 cut(s)	63, 2071, 2309, 2831, 3258, 3457
SmoI	CTYRAG	6 cut(s)	63, 2071, 2309, 2831, 3258, 3457
SseBI	AGGCCT	1 cut(s)	694
SsiI	CCGC	7 cut(s)	86, 152, 2122, 3377, 3557, 3571, 4297
SspI	AATATT	3 cut(s)	294, 1466, 2243
SspMI	CTAG	6 cut(s)	1563, 1910, 2874, 3609, 4266, 4275
SstI	GAGCTC	2 cut(s)	647, 760
StuI	AGGCCT	1 cut(s)	694
StyD4I	CCNGG	8 cut(s)	510, 1089, 1136, 1137, 2803, 3823, 3917, 3918
StyI	CCWWGG	4 cut(s)	51, 970, 4119, 4176
TaiI	ACGT	2 cut(s)	2170, 3391
TaqII	GACCGA	1 cut(s)	1808
TatI	WGTACW	3 cut(s)	474, 1591, 3490
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	6 cut(s)	1834, 2867, 3233, 3479, 3599, 3612
TscAI	CASTG	6 cut(s)	730, 1305, 2322, 2821, 3772, 4027
TseFI	GTSAC	5 cut(s)	14, 1862, 2449, 2921, 3767
TseI	GCWGC	3 cut(s)	82, 880, 2153
Tsp45I	GTSAC	5 cut(s)	14, 1862, 2449, 2921, 3767
TspGWI	ACGGA	2 cut(s)	913, 1796
TspMI	CCCGGG	2 cut(s)	1137, 3918
TspRI	CASTG	6 cut(s)	730, 1305, 2322, 2821, 3772, 4027
Tth111I	GACNNNGTC	1 cut(s)	3697
Van91I	CCANNNNNTGG	3 cut(s)	2321, 2861, 3062
Vha464I	CTTAAG	1 cut(s)	2071
VpaK11BI	GGWCC	3 cut(s)	745, 3283, 3982
VspI	ATTAAT	1 cut(s)	1482
XapI	RAATTY	8 cut(s)	380, 1009, 1208, 2182, 2189, 2455, 2470, 3662
XceI	RCATGY	5 cut(s)	677, 880, 1654, 2595, 3425
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2086, 3772
XhoI	CTCGAG	2 cut(s)	63, 3258
XmaI	CCCGGG	2 cut(s)	1137, 3918
XmnI	GAANNNNTTC	5 cut(s)	195, 2496, 3390, 3478, 4237
XspI	CTAG	6 cut(s)	1563, 1910, 2874, 3609, 4266, 4275
ZraI	GACGTC	1 cut(s)	2168
ZrmI	AGTACT	1 cut(s)	1593
Zsp2I	ATGCAT	3 cut(s)	675, 2650, 3805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.