Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002013

Physical Location & Seq

Genomic Coordinates Reverse (-)

32635581 .. 32646551

Gene Structure 10971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35300.t10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4317 bp

ATGAAGAGGTCTCGCGACGACGGTTATATAAGCTCGCAAGTTAAACGCCCTATGGTTACTTCTCGAGGAGAGCCCTCGGGGCAGCCCCAGATGATTACATCAACAGCTTCACAGAAGCTAACAACGAACGATGCCTTGTCATATCTGAAGGCGGTGAAGGAGATATTTGAAAACAACAAGGAGAAATACGAAGACTTTCTTGAAGTCATGAAGGACTTCAAAGCTCAAAGAGTTGACACCTCGGGTGTGATACAGAGGGTGAAGGATTTATTTAAAGGGCATCGAGACCTAATATTAGGTTTTAATACCTTCTTGCCGAAGGGATATGAGATCACTCTCCCTCCGGAGGATGAACAACCTCCTCATAAGAAGCCTGTTGAATTTGAGGAAGCTATTAGTTTTGTGAACAAGATTAAGACACGATTTCAACATGATGATCATGTTTATAAATCCTTTTTGGACATTCTGAATATGTACAGAAAGGAAAACAAGTCCATCTCAGAAGTTTACCAGGAGGTCTCAGCACTTTTCCAAGACCACCCAGACTTGCTTGGTGAGTTCACTCACTTTTTACCTGATACAACAGGAACGGCCTCAATCCAGGTTGCTCCATCTCAAAGAAACTCGATGCTTCGTGATAGGAGCTCTGCCATGCCCCCTATGCGGCAAATGCTTGTTGACAAGAAAGAAAGGCCCGTGGGTTCTTACCCTGAGCATGATCTCAGTGTTGACCGCCCTGATCTGGACCATGATAGGGCTTTGATGAAGGTTGAGAAAGAGCAAAGGAGGCGCAGTGAAAAAGAAAAGGAGAGGAGAGAAGATAGAGAAAGACGAGACGATAGGGATTTTGACCATGATGGCAGCAGGGACTTCAACATGCAGCGTTTTCCACACAAACGAAAATCTACTCGTAGGGGTGAAGACTTGGCTACTGACCAGTTGCACCAAGGTGGGGAAGACGTCGAAAACCTTGGAGCACATCTCATTTCATCTTCTTATGATGATAAAAATTCTGCAAAAAGCATATATGGCTCGGAGAGTGCCTTCTGTGAGAAGGTGAAGGAGAAGCTACGAAATCCTGATGCTTACCAGGAGTTTTTGAAGTGCCTCCATATTTATAGCAAGGAGATTATTACCCGAGCTGAATTGCAGAATCTGGTGGGTGATTTAATTGGAAAATATCCCGATCTTATGGATGGGTTCAATGAATTTTTGTCATGTTGTGAGAAGAAAGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAATCTATATGGAATGAAGGCAATGTACCAAGACCAGTGAAGGTAGAGGATAAGGATAAAGATCGAGATCGTGAAAGGGATGACATGATTAAAGATAGAGAGCGTGAAAACCGAGAAAGGGATAGACCTGATAGAAATGGTGCCTTTGGAAATAAAGAAATTGGAGGCCAGAAGATGTCTATATTTTCGAGCAAGGACAAATATTTGGCAAAACCTATTAATGAGCTTGACCTCTCTAATTGCGAGCGCTGCACTCCAAGCTATCGTCTTCTGCCAAAGAATTATCCAATACCTTCTGCTAGCCAAAGAACAGAGCTTGGTTGTGAAGTACTAAATGATCATTGGGTGTCTGTTACTTCTGGAAGCGAGGATTATTCTTTTAAACACATGCGCAAAAACCAGTATGAAGAGAGCCTGTTTCGGTGTGAAGATGATAGGTTTGAATTAGATATGCTGTTAGAGTCTGTGAATGTAACGACCAAGCGTGTGGAAGAACTATTAGAAAAGATCAACAACAACACCATTAAGACTGAGAGTCCAATCCAAATTAAAGAATACTTCACAGCTCTGAATCTAAGATGCGTTGAGCGATTATATGGTGACCACGGGCTTGATGTGATGGACGTGTTGATGAAAAATGCTTCACTAGCTTTGCCTGTTATATTAACGCGCTTGAAGCAAAAGCAAGAAGAGTGGGCAAGGTGTCGCTCTGATTTTAACAAAGTCTGGGCTGATATATATGCCAAGAACTATCACAAGTCACTTGATCATCGTAGCTTTTACTTCAAGCAACAGGACTCAAAGAGCTTAAGCACCAAAGCCTTATTGGCGGAGATTAAAGAGATGAGTGAGAAGAAGCGGAAGGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGACGACCTCTTATTCCAAATTTGGAATTTGAGTACCCTGATCTGGACATCCATGAAGATCTTTATCAACTCATCAAATACTCTTGTGGAGAAGTTTGCACAACCGAACAATTGGACAAAGTTATGAAGATATGGACAACCTTCCTTGAGCCAGTGCTTGGTGTTCCTCCTCGACCTCAGGTTGCAGAGGATACTGAAGATGTTGTGAAGCCAAAATCTCATGCTGTAAAAGATGGGGCTGTGAGTGGGGGAGAGAGTGATGATAGTCCTGATGGGGGTGCTATTACGACAACTTCTAAGCAGGTAAATACATCAAGAAACGGAGATGAAAGTATTCAACCTGAACAATCAAGCTCTGCAAGAGCTTGGACAGTAAATGGAGCTAATGGGCTCAAAGAAGAAAGTTCTCATGACATTGATCATGCTACATGTAAGGGTGATGCTTTCTGCAATACCTCTCAACAAGGTAAAGTGCAAAGTAATGCATCTACAGCCGATGAAGTGTCCAGAGTTAGCAAACAGGACAATTTTAATGAAAGATTAGTCATGTCTAATGTATCACTTGCTACTGGCTTGGAGCAAAGTAATGGACGGACTAATGTGGACAAATTATCAGGCCTTAGCCCTACTCCTTCAAGACCTGGAAACGGCACTCTTGAGGGCGCGGTTGAGTTACCTTCACCAGAGGCTGGTGATTCTACTAGACCCGTTATATCCTCAAATGGAGCAATCACAGAAGGCACCAAAGGTCACAGATATGTGGAAGAGTCTGTAAGAAACTTTAAGATTGAAAGAGAAGAAGGTGAAATATCTCCAAATGGAGATTTTGAGGAGGATAATTTTGCAAATTATAGAGAAGCCGGTTCAGAGGCTGTTCAAAAACCAAAGGATTGTGTTTCCAGCAGGCAACTTAAAGGCAGACATGGGGAAGAAGAAGTATGTGGTGGAGATGCAGGTGGTGAAAATGAGGCTGACGCTGATGATGAAGGTGAGGAAAGTGCTCATAGATCATCAGAGGATAGTGAGAATGCATCTGAGAATGGTGATGTCTCTGGAAGTGAATCTGGTGAGGGAGAGGAATGTTCTCGAGAAGAGCGTGAGGAAGAGGGGGACAATGATGAGCATGATACCAAGGCCGAGAGTGAAGGTGAAGCTGAAGGGACAGCGGATGCCCATGATGTTGAAGGAGATGGAACATCTTTACCGCACTCAGAACGTTTTCTACTTTCTGTGAAGCCTCTTGCAAAACATGTTCCTCCAGCTTTACTTGACAAGGACAAGGACTCTAGGATTTTCTATGGAAATGATTCTTTCTATGTACTTTTTAGGCTTCACCAAACACTATATGAGAGAATACAATCAGCAAAGATTAACTCGTCATCAGCGGAGAAAAAGTGGCGGGCATCAAATGAAACAAGCACAACTGATTCGTATGCTAGTTTCATGAATGCACTTTACAATTTACTCGACGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATCATTGGGACTCAGTCGTATCTTCTTTTCACATTAGACAAGCTGATCTACAAGCTTGTTAAACAGCTCCAAACAGTCGCTGGGGATGAGATGGATAATAAACTTGTCCAACTATATGCGTTTGAGAATTCGAGAAAACCAGGAAGATTCGTGGATGTAGTTTATCACGAAAATGCTCGTGTTCTTCTTCACGATGAGAACATTTATCGCATAGAATGTTTCTCTTCACCAACCCGGGTGTCTATTCAGCTTATGGATTATGGGAATGATAAGCCTGAAATGACTGCTGTTTCCATGGACCCTAATTTTTCTGCTTATTTGCACAATGATTTTCTCACCGTTCTTCCTGACAAAAGAGAGAAGTCTGGCATCTTTTTGAAGAGGAACAAACGCAAATATGCGAGTAGTGATGATTTGTCTGCTATTTGTCAGGCCATGGAAGGACTTAAAGTCGCCAATGGTCTGGAGTGTAAAATAGCTTGTCATTCATCCAAGGTATCATATGTTTTGGATACAGAAGACTTTTTGTTTCGAACAAAAAGGAGAAGAAAAACTTCGAACACTTCCTGCCATAACCAGGCTAGGTCTTCTAGTGGTTCAAGTAGAGTTGAGCGGTTTCACCGTTTGCTCTCTGGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1439

Amino Acids

163.05

Weight (kDa)

5.35

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	61 - 105	3e-18	Paired amphipathic helix repeat
PAH	PF02671	147 - 191	2.9e-18	Paired amphipathic helix repeat
PAH	PF02671	338 - 381	5.4e-16	Paired amphipathic helix repeat
Sin3_corepress	PF08295	479 - 571	3.3e-36	Sin3 family co-repressor
Sin3a_C	PF16879	1129 - 1377	7.7e-49	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24190 AT1G24190 AT1G24190 AT1G70060 AT1G70060
fragaria_vesca	FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300
malus_domestica	MD13G1084700.v1.1 MD16G1083700.v1.1
prunus_persica	Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1
pyrus_communis	pycom13g07320 pycom16g07260
rosa_chinensis	RchiOBHm_Chr4g0444901
rosa_laevigata	RLG00000005790
rosa_multiflora	Rmu_sc0006845.1_g000002 Rmu_sc0013783.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385400
rosa_rugosa	Rorug04G0355800 Rorug04G0355900.1 Rorug04G0356000 Rorug04G0356100
rosa_samantha	Rh4AG417700 Rh4BG429500 Rh4CG444200 Rh4DG425400
rosa_wichuraiana	Rw4G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AarI	CACCTGC	1 cut(s)	3107
AatII	GACGTC	1 cut(s)	963
Acc16I	TGCGCA	1 cut(s)	1655
Acc36I	ACCTGC	2 cut(s)	2455, 3107
AccB1I	GGYRCC	2 cut(s)	1403, 2903
AccB7I	CCANNNNNTGG	2 cut(s)	2321, 2852
AccBSI	CCGCTC	1 cut(s)	4288
AccII	CGCG	3 cut(s)	15, 1933, 2828
AccIII	TCCGGA	1 cut(s)	343
AclI	AACGTT	1 cut(s)	3379
AcsI	RAATTY	7 cut(s)	380, 1009, 1208, 2182, 2189, 3653, 3802
AcuI	CTGAAG	3 cut(s)	167, 2379, 3339
AcyI	GRCGYC	1 cut(s)	960
AfaI	GTAC	5 cut(s)	476, 1290, 1593, 2198, 3483
AfeI	AGCGCT	1 cut(s)	1511
AflII	CTTAAG	1 cut(s)	2071
AflIII	ACRYGT	3 cut(s)	1887, 2591, 3412
AhdI	GACNNNNNGTC	2 cut(s)	1797, 4124
AjiI	CACGTC	1 cut(s)	1888
AjnI	CCWGG	6 cut(s)	510, 600, 1089, 2803, 3814, 4251
AleI	CACNNNNGTG	1 cut(s)	948
Alw21I	GWGCWC	3 cut(s)	647, 979, 3166
Alw26I	GTCTC	5 cut(s)	15, 279, 523, 828, 3217
AlwNI	CAGNNNCTG	4 cut(s)	1156, 2852, 3035, 3755
Ama87I	CYCGRG	6 cut(s)	63, 76, 241, 1137, 3249, 3909
Aor13HI	TCCGGA	1 cut(s)	343
Aor51HI	AGCGCT	1 cut(s)	1511
AoxI	GGCC	6 cut(s)	591, 692, 1429, 2779, 3297, 4107
ApeKI	GCWGC	5 cut(s)	82, 861, 880, 1512, 2153
ApoI	RAATTY	7 cut(s)	380, 1009, 1208, 2182, 2189, 3653, 3802
AseI	ATTAAT	1 cut(s)	1482
Asp700I	GAANNNNTTC	6 cut(s)	195, 215, 2496, 3381, 3469, 4228
AspLEI	GCGC	5 cut(s)	792, 1512, 1656, 1935, 2828
AspS9I	GGNCC	3 cut(s)	693, 745, 3973
AsuC2I	CCSGG	2 cut(s)	3910, 3911
AsuII	TTCGAA	2 cut(s)	4207, 4232
AsuNHI	GCTAGC	1 cut(s)	1562
AvaI	CYCGRG	6 cut(s)	63, 76, 241, 1137, 3249, 3909
AvaII	GGWCC	2 cut(s)	745, 3973
AxyI	CCTNAGG	1 cut(s)	2340
BanI	GGYRCC	2 cut(s)	1403, 2903
BanII	GRGCYC	3 cut(s)	75, 647, 2556
BarI	GAAGNNNNNNTAC	2 cut(s)	1272, 1304
BauI	CACGAG	1 cut(s)	3852
BbsI	GAAGAC	6 cut(s)	198, 927, 963, 1523, 4200, 4254
Bbv12I	GWGCWC	3 cut(s)	647, 979, 3166
BbvI	GCAGC	5 cut(s)	94, 873, 892, 1499, 2140
BceAI	ACGGC	2 cut(s)	606, 2827
BciT130I	CCWGG	6 cut(s)	512, 602, 1091, 2805, 3816, 4253
BciVI	GTATCC	2 cut(s)	2347, 4180
BclI	TGATCA	4 cut(s)	436, 1600, 2029, 2581
BcnI	CCSGG	2 cut(s)	3910, 3911
BcoDI	GTCTC	5 cut(s)	15, 279, 523, 828, 3217
BfaI	CTAG	7 cut(s)	1563, 1910, 2865, 3450, 3600, 4257, 4266
BfmI	CTRYAG	1 cut(s)	2652
BfoI	RGCGCY	1 cut(s)	1513
BfrI	CTTAAG	1 cut(s)	2071
BfuAI	ACCTGC	2 cut(s)	2455, 3107
BfuI	GTATCC	2 cut(s)	2347, 4180
BglI	GCCNNNNNGGC	2 cut(s)	79, 2090
BglII	AGATCT	1 cut(s)	2221
BisI	GCNGC	6 cut(s)	83, 665, 862, 881, 1513, 2154
BlsI	GCNGC	6 cut(s)	84, 666, 863, 882, 1514, 2155
BmcAI	AGTACT	1 cut(s)	1593
Bme1390I	CCNGG	8 cut(s)	512, 602, 1091, 2805, 3816, 3910, 3911, 4253
Bme18I	GGWCC	2 cut(s)	745, 3973
BmeRI	GACNNNNNGTC	2 cut(s)	1797, 4124
BmeT110I	CYCGRG	6 cut(s)	63, 76, 241, 1137, 3249, 3909
BmgBI	CACGTC	1 cut(s)	1888
BmgT120I	GGNCC	3 cut(s)	693, 745, 3973
BmiI	GGNNCC	4 cut(s)	1241, 1405, 2905, 3975
BmrFI	CCNGG	8 cut(s)	512, 602, 1091, 2805, 3816, 3910, 3911, 4253
BmtI	GCTAGC	1 cut(s)	1566
BpiI	GAAGAC	6 cut(s)	198, 927, 963, 1523, 4200, 4254
BplI	GAGNNNNNCTC	2 cut(s)	966, 998
BpmI	CTGGAG	2 cut(s)	3405, 4160
Bpu10I	CCTNAGC	2 cut(s)	711, 2783
Bpu14I	TTCGAA	2 cut(s)	4207, 4232
BpuEI	CTTGAG	2 cut(s)	2330, 2840
BpuMI	CCSGG	2 cut(s)	3910, 3911
BsaBI	GATNNNNATC	3 cut(s)	1323, 1329, 2226
BsaHI	GRCGYC	1 cut(s)	960
BsaI	GGTCTC	3 cut(s)	15, 279, 523
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	6 cut(s)	325, 355, 778, 808, 3542, 3572
Bse118I	RCCGGY	1 cut(s)	3023
Bse1I	ACTGG	5 cut(s)	937, 1298, 1663, 2315, 2737
Bse21I	CCTNAGG	1 cut(s)	2340
Bse3DI	GCAATG	1 cut(s)	1291
Bse8I	GATNNNNATC	3 cut(s)	1323, 1329, 2226
BseAI	TCCGGA	1 cut(s)	343
BseBI	CCWGG	6 cut(s)	512, 602, 1091, 2805, 3816, 4253
BseGI	GGATG	9 cut(s)	355, 1201, 1348, 2211, 3337, 3667, 3766, 3835, 4163
BseJI	GATNNNNATC	3 cut(s)	1323, 1329, 2226
BseMI	GCAATG	1 cut(s)	1291
BseMII	CTCAG	9 cut(s)	513, 534, 702, 736, 1785, 2354, 3189, 3387, 3701
BseNI	ACTGG	5 cut(s)	937, 1298, 1663, 2315, 2737
BseRI	GAGGAG	5 cut(s)	81, 351, 826, 2322, 3008
BseXI	GCAGC	5 cut(s)	94, 873, 892, 1499, 2140
BseYI	CCCAGC	1 cut(s)	3755
BsgI	GTGCAG	1 cut(s)	1498
Bsh1236I	CGCG	3 cut(s)	15, 1933, 2828
BshFI	GGCC	6 cut(s)	593, 694, 1431, 2781, 3299, 4109
BshNI	GGYRCC	2 cut(s)	1403, 2903
BsiHKAI	GWGCWC	3 cut(s)	647, 979, 3166
BsiHKCI	CYCGRG	6 cut(s)	63, 76, 241, 1137, 3249, 3909
BsiSI	CCGG	3 cut(s)	344, 3024, 3910
BslFI	GGGAC	4 cut(s)	881, 3287, 3337, 3697
BsmAI	GTCTC	5 cut(s)	15, 279, 523, 828, 3217
BsmBI	CGTCTC	1 cut(s)	828
BsmFI	GGGAC	4 cut(s)	881, 3287, 3337, 3697
BsmI	GAATGC	2 cut(s)	3196, 3616
BsnI	GGCC	6 cut(s)	593, 694, 1431, 2781, 3299, 4109
Bso31I	GGTCTC	3 cut(s)	15, 279, 523
BsoBI	CYCGRG	6 cut(s)	63, 76, 241, 1137, 3249, 3909
Bsp119I	TTCGAA	2 cut(s)	4207, 4232
Bsp1286I	GDGCHC	5 cut(s)	75, 647, 979, 2556, 3166
Bsp13I	TCCGGA	1 cut(s)	343
Bsp1407I	TGTACA	1 cut(s)	474
Bsp19I	CCATGG	2 cut(s)	3969, 4110
Bsp68I	TCGCGA	1 cut(s)	15
BspANI	GGCC	6 cut(s)	593, 694, 1431, 2781, 3299, 4109
BspCNI	CTCAG	9 cut(s)	512, 533, 703, 735, 1786, 2353, 3190, 3386, 3700
BspEI	TCCGGA	1 cut(s)	343
BspFNI	CGCG	3 cut(s)	15, 1933, 2828
BspHI	TCATGA	5 cut(s)	207, 1254, 2572, 3606, 4313
BspLI	GGNNCC	4 cut(s)	1241, 1405, 2905, 3975
BspMI	ACCTGC	2 cut(s)	2455, 3107
BspOI	GCTAGC	1 cut(s)	1566
BspQI	GCTCTTC	1 cut(s)	3249
BspT104I	TTCGAA	2 cut(s)	4207, 4232
BspT107I	GGYRCC	2 cut(s)	1403, 2903
BspTI	CTTAAG	1 cut(s)	2071
BspTNI	GGTCTC	3 cut(s)	15, 279, 523
BsrBI	CCGCTC	1 cut(s)	4288
BsrDI	GCAATG	1 cut(s)	1291
BsrFI	RCCGGY	1 cut(s)	3023
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	5 cut(s)	937, 1298, 1663, 2315, 2737
BssAI	RCCGGY	1 cut(s)	3023
BssNI	GRCGYC	1 cut(s)	960
BssSI	CACGAG	1 cut(s)	3852
BssT1I	CCWWGG	6 cut(s)	946, 970, 3294, 3969, 4110, 4167
Bst2BI	CACGAG	1 cut(s)	3852
Bst2UI	CCWGG	6 cut(s)	512, 602, 1091, 2805, 3816, 4253
Bst4CI	ACNGT	6 cut(s)	23, 2536, 3635, 3751, 4015, 4298
Bst6I	CTCTTC	7 cut(s)	1665, 1947, 2922, 3249, 3261, 3904, 4049
BstACI	GRCGYC	1 cut(s)	960
BstAFI	CTTAAG	1 cut(s)	2071
BstAUI	TGTACA	1 cut(s)	474
BstBI	TTCGAA	2 cut(s)	4207, 4232
BstC8I	GCNNGC	5 cut(s)	35, 1508, 1564, 3068, 3564
BstDSI	CCRYGG	4 cut(s)	696, 1867, 3969, 4110
BstEII	GGTNACC	1 cut(s)	1862
BstF5I	GGATG	9 cut(s)	355, 1201, 1348, 2211, 3337, 3667, 3766, 3835, 4163
BstFNI	CGCG	3 cut(s)	15, 1933, 2828
BstH2I	RGCGCY	1 cut(s)	1513
BstHHI	GCGC	5 cut(s)	792, 1512, 1656, 1935, 2828
BstMAI	GTCTC	5 cut(s)	15, 279, 523, 828, 3217
BstNI	CCWGG	6 cut(s)	512, 602, 1091, 2805, 3816, 4253
BstNSI	RCATGY	4 cut(s)	880, 1654, 2595, 3416
BstPI	GGTNACC	1 cut(s)	1862
BstSCI	CCNGG	8 cut(s)	510, 600, 1089, 2803, 3814, 3908, 3909, 4251
BstSFI	CTRYAG	1 cut(s)	2652
BstUI	CGCG	3 cut(s)	15, 1933, 2828
BstV1I	GCAGC	5 cut(s)	94, 873, 892, 1499, 2140
BstV2I	GAAGAC	6 cut(s)	198, 927, 963, 1523, 4200, 4254
BstX2I	RGATCY	1 cut(s)	2221
BstXI	CCANNNNNNTGG	2 cut(s)	1750, 4138
BstYI	RGATCY	1 cut(s)	2221
Bsu36I	CCTNAGG	1 cut(s)	2340
BsuI	GTATCC	2 cut(s)	2347, 4180
BsuRI	GGCC	6 cut(s)	593, 694, 1431, 2781, 3299, 4109
BtgI	CCRYGG	4 cut(s)	696, 1867, 3969, 4110
BtrI	CACGTC	1 cut(s)	1888
BtsCI	GGATG	9 cut(s)	355, 1201, 1348, 2211, 3337, 3667, 3766, 3835, 4163
BtsI	GCAGTG	1 cut(s)	799
BtsIMutI	CAGTG	4 cut(s)	730, 799, 1305, 2322
BtuMI	TCGCGA	1 cut(s)	15
BveI	ACCTGC	2 cut(s)	2455, 3107
Cac8I	GCNNGC	5 cut(s)	35, 1508, 1564, 3068, 3564
CaiI	CAGNNNCTG	4 cut(s)	1156, 2852, 3035, 3755
CciI	TCATGA	5 cut(s)	207, 1254, 2572, 3606, 4313
CfoI	GCGC	5 cut(s)	792, 1512, 1656, 1935, 2828
Cfr10I	RCCGGY	1 cut(s)	3023
Cfr13I	GGNCC	3 cut(s)	693, 745, 3973
Cfr9I	CCCGGG	1 cut(s)	3909
CseI	GACGC	1 cut(s)	3146
Csp6I	GTAC	5 cut(s)	475, 1289, 1592, 2197, 3482
CspCI	CAANNNNNGTGG	2 cut(s)	1937, 1972
CviQI	GTAC	5 cut(s)	475, 1289, 1592, 2197, 3482
DraI	TTTAAA	2 cut(s)	274, 1645
DriI	GACNNNNNGTC	2 cut(s)	1797, 4124
Eam1104I	CTCTTC	7 cut(s)	1665, 1947, 2922, 3249, 3261, 3904, 4049
Eam1105I	GACNNNNNGTC	2 cut(s)	1797, 4124
EarI	CTCTTC	7 cut(s)	1665, 1947, 2922, 3249, 3261, 3904, 4049
EciI	GGCGGA	1 cut(s)	2108
Ecl136II	GAGCTC	1 cut(s)	645
Eco130I	CCWWGG	6 cut(s)	946, 970, 3294, 3969, 4110, 4167
Eco147I	AGGCCT	1 cut(s)	2781
Eco24I	GRGCYC	3 cut(s)	75, 647, 2556
Eco31I	GGTCTC	3 cut(s)	15, 279, 523
Eco47I	GGWCC	2 cut(s)	745, 3973
Eco47III	AGCGCT	1 cut(s)	1511
Eco53kI	GAGCTC	1 cut(s)	645
Eco57I	CTGAAG	3 cut(s)	167, 2379, 3339
Eco81I	CCTNAGG	1 cut(s)	2340
Eco88I	CYCGRG	6 cut(s)	63, 76, 241, 1137, 3249, 3909
Eco91I	GGTNACC	1 cut(s)	1862
EcoICRI	GAGCTC	1 cut(s)	645
EcoO65I	GGTNACC	1 cut(s)	1862
EcoRI	GAATTC	1 cut(s)	3802
EcoRII	CCWGG	6 cut(s)	510, 600, 1089, 2803, 3814, 4251
EcoT14I	CCWWGG	6 cut(s)	946, 970, 3294, 3969, 4110, 4167
EcoT22I	ATGCAT	2 cut(s)	2650, 3196
EcoT38I	GRGCYC	3 cut(s)	75, 647, 2556
ErhI	CCWWGG	6 cut(s)	946, 970, 3294, 3969, 4110, 4167
Esp3I	CGTCTC	1 cut(s)	828
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 4213, 4245
FaqI	GGGAC	4 cut(s)	881, 3287, 3337, 3697
FauI	CCCGC	1 cut(s)	3555
FauNDI	CATATG	1 cut(s)	4177
FbaI	TGATCA	4 cut(s)	436, 1600, 2029, 2581
Fnu4HI	GCNGC	6 cut(s)	83, 665, 862, 881, 1513, 2154
FokI	GGATG	9 cut(s)	362, 1208, 1355, 2198, 3344, 3674, 3773, 3842, 4150
FriOI	GRGCYC	3 cut(s)	75, 647, 2556
Fsp4HI	GCNGC	6 cut(s)	83, 665, 862, 881, 1513, 2154
FspBI	CTAG	7 cut(s)	1563, 1910, 2865, 3450, 3600, 4257, 4266
FspI	TGCGCA	1 cut(s)	1655
GlaI	GCGC	5 cut(s)	791, 1511, 1655, 1934, 2827
GluI	GCNGC	6 cut(s)	83, 665, 862, 881, 1513, 2154
GsaI	CCCAGC	1 cut(s)	3759
GsuI	CTGGAG	2 cut(s)	3405, 4160
HaeII	RGCGCY	1 cut(s)	1513
HaeIII	GGCC	6 cut(s)	593, 694, 1431, 2781, 3299, 4109
HapII	CCGG	3 cut(s)	344, 3024, 3910
HgaI	GACGC	1 cut(s)	3146
HhaI	GCGC	5 cut(s)	792, 1512, 1656, 1935, 2828
Hin1I	GRCGYC	1 cut(s)	960
Hin6I	GCGC	5 cut(s)	790, 1510, 1654, 1933, 2826
HinP1I	GCGC	5 cut(s)	790, 1510, 1654, 1933, 2826
HincII	GTYRAC	3 cut(s)	235, 679, 730
HindII	GTYRAC	3 cut(s)	235, 679, 730
HindIII	AAGCTT	1 cut(s)	3728
HpaII	CCGG	3 cut(s)	344, 3024, 3910
Hpy166II	GTNNAC	7 cut(s)	235, 406, 508, 561, 679, 730, 2767
Hpy8I	GTNNAC	7 cut(s)	235, 406, 508, 561, 679, 730, 2767
Hpy99I	CGWCG	4 cut(s)	20, 23, 965, 3635
HpyCH4III	ACNGT	6 cut(s)	23, 2536, 3635, 3751, 4015, 4298
HpyCH4IV	ACGT	3 cut(s)	960, 1887, 3379
HpySE526I	ACGT	3 cut(s)	960, 1887, 3379
Hsp92I	GRCGYC	1 cut(s)	960
HspAI	GCGC	5 cut(s)	790, 1510, 1654, 1933, 2826
Kpn2I	TCCGGA	1 cut(s)	343
Ksp22I	TGATCA	4 cut(s)	436, 1600, 2029, 2581
LguI	GCTCTTC	1 cut(s)	3249
LmnI	GCTCC	7 cut(s)	613, 642, 974, 2543, 2740, 2888, 3747
Lsp1109I	GCAGC	5 cut(s)	94, 873, 892, 1499, 2140
MaeI	CTAG	7 cut(s)	1563, 1910, 2865, 3450, 3600, 4257, 4266
MaeII	ACGT	3 cut(s)	960, 1887, 3379
MaeIII	GTNAC	7 cut(s)	55, 1615, 1735, 1862, 2022, 2835, 2912
MbiI	CCGCTC	1 cut(s)	4288
MfeI	CAATTG	1 cut(s)	2273
MflI	RGATCY	1 cut(s)	2221
MhlI	GDGCHC	5 cut(s)	75, 647, 979, 2556, 3166
MlyI	GAGTC	6 cut(s)	1733, 1807, 2054, 2939, 3440, 3679
MmeI	TCCRAC	1 cut(s)	3808
Mph1103I	ATGCAT	2 cut(s)	2650, 3196
MroI	TCCGGA	1 cut(s)	343
MroXI	GAANNNNTTC	6 cut(s)	195, 215, 2496, 3381, 3469, 4228
MslI	CAYNNNNRTG	3 cut(s)	948, 2919, 3846
MspA1I	CMGCKG	2 cut(s)	3329, 3548
MspCI	CTTAAG	1 cut(s)	2071
MspI	CCGG	3 cut(s)	344, 3024, 3910
MspR9I	CCNGG	8 cut(s)	512, 602, 1091, 2805, 3816, 3910, 3911, 4253
MunI	CAATTG	1 cut(s)	2273
Mva1269I	GAATGC	2 cut(s)	3196, 3616
MvaI	CCWGG	6 cut(s)	512, 602, 1091, 2805, 3816, 4253
MvnI	CGCG	3 cut(s)	15, 1933, 2828
NciI	CCSGG	2 cut(s)	3910, 3911
NcoI	CCATGG	2 cut(s)	3969, 4110
NdeI	CATATG	1 cut(s)	4177
NheI	GCTAGC	1 cut(s)	1562
NlaIV	GGNNCC	4 cut(s)	1241, 1405, 2905, 3975
NmeAIII	GCCGAG	1 cut(s)	3325
NmuCI	GTSAC	3 cut(s)	1862, 2022, 2912
NruI	TCGCGA	1 cut(s)	15
NsbI	TGCGCA	1 cut(s)	1655
NsiI	ATGCAT	2 cut(s)	2650, 3196
NspI	RCATGY	4 cut(s)	880, 1654, 2595, 3416
NspV	TTCGAA	2 cut(s)	4207, 4232
OliI	CACNNNNGTG	1 cut(s)	948
PaeR7I	CTCGAG	2 cut(s)	63, 3249
PagI	TCATGA	5 cut(s)	207, 1254, 2572, 3606, 4313
PaqCI	CACCTGC	1 cut(s)	3107
PceI	AGGCCT	1 cut(s)	2781
PciI	ACATGT	2 cut(s)	2591, 3412
PciSI	GCTCTTC	1 cut(s)	3249
PcsI	WCGNNNNNNNCGW	1 cut(s)	3256
PctI	GAATGC	2 cut(s)	3196, 3616
PdmI	GAANNNNTTC	6 cut(s)	195, 215, 2496, 3381, 3469, 4228
PfeI	GAWTC	7 cut(s)	1153, 1834, 2858, 3224, 3470, 3590, 3822
PflFI	GACNNNGTC	1 cut(s)	3688
PflMI	CCANNNNNTGG	2 cut(s)	2321, 2852
PkrI	GCNGC	6 cut(s)	84, 666, 863, 882, 1514, 2155
PleI	GAGTC	6 cut(s)	1732, 1806, 2054, 2938, 3440, 3679
PpsI	GAGTC	6 cut(s)	1732, 1806, 2054, 2938, 3440, 3679
PscI	ACATGT	2 cut(s)	2591, 3412
PshBI	ATTAAT	1 cut(s)	1482
PsiI	TTATAA	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	647
Psp1406I	AACGTT	1 cut(s)	3379
Psp6I	CCWGG	6 cut(s)	510, 600, 1089, 2803, 3814, 4251
PspEI	GGTNACC	1 cut(s)	1862
PspFI	CCCAGC	1 cut(s)	3755
PspGI	CCWGG	6 cut(s)	510, 600, 1089, 2803, 3814, 4251
PspN4I	GGNNCC	4 cut(s)	1241, 1405, 2905, 3975
PspPI	GGNCC	3 cut(s)	693, 745, 3973
PsrI	GAACNNNNNNTAC	2 cut(s)	3369, 3401
PstNI	CAGNNNCTG	4 cut(s)	1156, 2852, 3035, 3755
PsuI	RGATCY	1 cut(s)	2221
PsyI	GACNNNGTC	1 cut(s)	3688
RruI	TCGCGA	1 cut(s)	15
RsaI	GTAC	5 cut(s)	476, 1290, 1593, 2198, 3483
RsaNI	GTAC	5 cut(s)	475, 1289, 1592, 2197, 3482
RseI	CAYNNNNRTG	3 cut(s)	948, 2919, 3846
SacI	GAGCTC	1 cut(s)	647
SapI	GCTCTTC	1 cut(s)	3249
SatI	GCNGC	6 cut(s)	83, 665, 862, 881, 1513, 2154
Sau96I	GGNCC	3 cut(s)	693, 745, 3973
ScaI	AGTACT	1 cut(s)	1593
SchI	GAGTC	6 cut(s)	1733, 1807, 2054, 2939, 3440, 3679
ScrFI	CCNGG	8 cut(s)	512, 602, 1091, 2805, 3816, 3910, 3911, 4253
SduI	GDGCHC	5 cut(s)	75, 647, 979, 2556, 3166
SfcI	CTRYAG	1 cut(s)	2652
Sfr274I	CTCGAG	2 cut(s)	63, 3249
SfuI	TTCGAA	2 cut(s)	4207, 4232
SinI	GGWCC	2 cut(s)	745, 3973
SlaI	CTCGAG	2 cut(s)	63, 3249
SmaI	CCCGGG	1 cut(s)	3911
SmiMI	CAYNNNNRTG	3 cut(s)	948, 2919, 3846
SmlI	CTYRAG	5 cut(s)	63, 2071, 2309, 2819, 3249
SmoI	CTYRAG	5 cut(s)	63, 2071, 2309, 2819, 3249
SseBI	AGGCCT	1 cut(s)	2781
SspI	AATATT	2 cut(s)	294, 1466
SspMI	CTAG	7 cut(s)	1563, 1910, 2865, 3450, 3600, 4257, 4266
SstI	GAGCTC	1 cut(s)	647
StuI	AGGCCT	1 cut(s)	2781
StyD4I	CCNGG	8 cut(s)	510, 600, 1089, 2803, 3814, 3908, 3909, 4251
StyI	CCWWGG	6 cut(s)	946, 970, 3294, 3969, 4110, 4167
TaaI	ACNGT	6 cut(s)	23, 2536, 3635, 3751, 4015, 4298
TaiI	ACGT	3 cut(s)	963, 1890, 3382
TatI	WGTACW	3 cut(s)	474, 1591, 3481
TauI	GCSGC	1 cut(s)	667
TfiI	GAWTC	7 cut(s)	1153, 1834, 2858, 3224, 3470, 3590, 3822
TscAI	CASTG	4 cut(s)	730, 799, 1305, 2322
TseFI	GTSAC	3 cut(s)	1862, 2022, 2912
TseI	GCWGC	5 cut(s)	82, 861, 880, 1512, 2153
Tsp45I	GTSAC	3 cut(s)	1862, 2022, 2912
TspGWI	ACGGA	2 cut(s)	2499, 2770
TspMI	CCCGGG	1 cut(s)	3909
TspRI	CASTG	4 cut(s)	730, 799, 1305, 2322
Tth111I	GACNNNGTC	1 cut(s)	3688
Van91I	CCANNNNNTGG	2 cut(s)	2321, 2852
Vha464I	CTTAAG	1 cut(s)	2071
VpaK11BI	GGWCC	2 cut(s)	745, 3973
VspI	ATTAAT	1 cut(s)	1482
XapI	RAATTY	7 cut(s)	380, 1009, 1208, 2182, 2189, 3653, 3802
XceI	RCATGY	4 cut(s)	880, 1654, 2595, 3416
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2086, 3752
XhoI	CTCGAG	2 cut(s)	63, 3249
XmaI	CCCGGG	1 cut(s)	3909
XmnI	GAANNNNTTC	6 cut(s)	195, 215, 2496, 3381, 3469, 4228
XspI	CTAG	7 cut(s)	1563, 1910, 2865, 3450, 3600, 4257, 4266
ZraI	GACGTC	1 cut(s)	961
ZrmI	AGTACT	1 cut(s)	1593
Zsp2I	ATGCAT	2 cut(s)	2650, 3196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.