Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002013

Physical Location & Seq

Genomic Coordinates Forward (+)

52849885 .. 52853121

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0356000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGAGCCACCGGCGGCGGCGGCGCCACTCCAGACTCACTACGCCGACTCGCTGGACTCGTCGCCGAGGTCCCGAAACACCGACTCCTGGGACGACCCGCTCCCGCCGGCGTCCAGGCTCCGGCTGATGTGCAGCTACGGTGGCCACATCGTGCCGCGGCCCCACGACAAGTCGTTGTGCTACGTCGGCGGCGACACTCGAATCGTCGTCGTGGACAGGAACACTTCGCTTGCGGACCTCTCGAATCGTCTGGCGAAGACGCTTTTGAATAACCGGCCGTTCACGCTGAAATACCAGTTGCCGAGTGAGGACCTGGACTCGTTGATCTCCGTGACGACCGACGAGGATTTGGATAATATGATCGACGAGTTTGACCGGACGGCGAGCCACAATTCGTCGGCGAAGCCGGCGCGGATTCGGCTGTTTCTGTTTCCGCTGAAGCCGGATTCAGCGCAGTCGATGGGGCCCCTCGATATGCCGACCAAGTCGGACGACTGGTTCCTCAGCGCGCTCAACGGCTCGTCGGCGATGCTCAACCGCGGCTTCTCCGACTCCGCCTCCGTCAACTGCTTGCTCGGCCTAGACGACGACGGCGGCGGCGGCGCGGCGAACAATTCGGATTCGAGAGGAGGAGACGCCGAGGCTTCTGCGGCGGCGAATTGCAAGAACGGGAAACCGGACGTTCACTCTGTCCCCGATTCGCCGATGCTCGAGAACTCGTCGTCGTTTGGGTCAACATCGTCGTCTCCGTCGCTGGCGAATTTGCCTCCGATTCGGGTCCACGTGGAAGACAGCGGTGGGAGCAGTCACGGTGGGAATAGAGCGCAGGATCAGAAGGTTGGGATTGAAGAGCAGTTTGCTCAGATGACGGTGGGTTTGGTTGGGCAGCAGCAGAAGCAAGACGATGGCGGCGGCTTTGTGGTGCTGTCTTCACCGCCGCCGTTGCCGACTACTATTGTGCCTTCCTCTGCGCCGGTGAGTTCTTCTTTGGCCCCTGATTACCTGAATCGGGTCGTCTCCGATGACGAACGATCCGATCACGGTGGATATCGGAAACCGCTTCCTCCTCAGCCTCAGCAACAGGGTGTACCGCCTCAGTCTCAGCCCAAATCAACCGGAATTTTTGATTTGCCGTCGCCAGATTCAGTGTCAAGTGATCATAGTTTATCAAATGCTGCCATATCTCGCCCAAAACCTGTAATTTATCAAGAACCAGTTGCTCAAATACCCGCGGTAACCCCCACAAGGTTTCCTGGAAACCTTGTTGATCCGAAAGTTAATGTCTCCGATCCAAACACTCGGGTTCAGTTGCAACAACAGGTTCAGGATTCCGGGTATGTATTGCAAGCCCAATATGATCAACAACTACAACAGCAGCAACTACAACAACAACTACAACAACAGCAACAATTTATACACCCTGGTGCACAGTACATGCATCATCACCCTGCTGGGTCTGTGCCAATTCAGGCATACTACCCTGTATATCCTTCTCAGCAGCAGCACCAGCAGCAGCAGCACCAGCAGCAACAACACCAGCAGCAACAGCAACACCACCATCATCCTCAGCTCGATCAGCAGCAGCAATACCAGGTTTATTACATGCCCGCAAGACAGGCCCAACCTTACAGCAACTTGCCCCTGCAGCAACCGCTGCAGTCCAACATTAGTGAAGCTGCTGCTGCTACTATTGCTTCTAGCCGGTCTCAACCTCCTCCCAATCCAATGCTCTCTCCTACCGCAGCTTACAGCCAGATAAGGAATGCCCCCATTGCCAAACCCGAAATTGCTGCTGGTGTGTACAGGACAACAACTACAGCTGCTCCTCCATCTCTGGTTCAAGTTCCTCCTACTCAGCATCAGCCTCAGCAACAATATGTTGGTTACGCACAGGTTCATCACCCGTCTCAATCAACTGTTCCTACTTCGACAGGTGCTGCTAATTATGCCTATGAATATGCCGATGCTTCTCATGCTCAGCATGCCCAGGTATACTATACTCAGCCTCTAGCACCCGCAATGACTTCTCAGTACCAAACCATGACAGCCGCAGCTGCCATGGGGCTGCCGGAAGTTTCAACTCAGCTTCCTAATGACAACATCAAGCAGCAGCAGCAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

707

Amino Acids

76.79

Weight (kDa)

5.71

Isoelectric Point (pI)

67.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	55 - 145	2e-16	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24190 AT1G24190 AT1G24190 AT1G70060 AT1G70060
fragaria_vesca	FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300
malus_domestica	MD13G1084700.v1.1 MD16G1083700.v1.1
prunus_persica	Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1
pyrus_communis	pycom13g07320 pycom16g07260
rosa_chinensis	RchiOBHm_Chr4g0444901
rosa_laevigata	RLG00000005790
rosa_multiflora	Rmu_sc0006845.1_g000002 Rmu_sc0013783.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385400
rosa_rugosa	Rorug04G0355800 Rorug04G0355900.1 Rorug04G0356000 Rorug04G0356100
rosa_samantha	Rh4AG417700 Rh4BG429500 Rh4CG444200 Rh4DG425400
rosa_wichuraiana	Rw4G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	1992
AccII	CGCG	6 cut(s)	157, 412, 509, 540, 605, 1232
AclWI	GGATC	4 cut(s)	837, 1026, 1262, 1283
AcoI	YGGCCR	2 cut(s)	142, 275
AcsI	RAATTY	2 cut(s)	760, 1119
AcuI	CTGAAG	1 cut(s)	458
AcvI	CACGTG	1 cut(s)	784
AcyI	GRCGYC	3 cut(s)	23, 110, 636
AdeI	CACNNNGTG	1 cut(s)	151
AfaI	GTAC	4 cut(s)	1089, 1433, 1802, 2033
AfiI	CCNNNNNNNGG	4 cut(s)	87, 120, 1009, 1245
AgsI	TTSAA	4 cut(s)	268, 848, 1841, 2079
AjnI	CCWGG	7 cut(s)	86, 113, 312, 1252, 1420, 1590, 1986
AleI	CACNNNNGTG	1 cut(s)	1422
AloI	GAACNNNNNNTCC	2 cut(s)	482, 514
AluBI	AGCT	7 cut(s)	135, 1570, 1676, 1745, 1820, 2054, 2086
AluI	AGCT	7 cut(s)	135, 1570, 1676, 1745, 1820, 2054, 2086
Alw21I	GWGCWC	1 cut(s)	1429
Alw26I	GTCTC	7 cut(s)	627, 750, 1021, 1104, 1288, 1710, 1911
Alw44I	GTGCAC	1 cut(s)	1425
AlwI	GGATC	4 cut(s)	837, 1026, 1262, 1283
AlwNI	CAGNNNCTG	1 cut(s)	1937
Ama87I	CYCGRG	2 cut(s)	710, 1299
AoxI	GGCC	7 cut(s)	142, 158, 275, 464, 577, 990, 1617
ApaI	GGGCCC	1 cut(s)	468
ApaLI	GTGCAC	1 cut(s)	1425
ApoI	RAATTY	2 cut(s)	760, 1119
ArsI	GACNNNNNNTTYG	2 cut(s)	859, 891
AspLEI	GCGC	8 cut(s)	25, 412, 454, 509, 511, 605, 826, 973
AspS9I	GGNCC	9 cut(s)	69, 159, 235, 310, 464, 465, 778, 991, 1618
AsuC2I	CCSGG	1 cut(s)	1333
AsuHPI	GGTGA	4 cut(s)	924, 988, 1436, 1892
AvaI	CYCGRG	2 cut(s)	710, 1299
AvaII	GGWCC	4 cut(s)	69, 235, 310, 778
BaeGI	GKGCMC	2 cut(s)	468, 1429
BalI	TGGCCA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	784
BbsI	GAAGAC	3 cut(s)	263, 795, 921
Bbv12I	GWGCWC	1 cut(s)	1429
BbvCI	CCTCAGC	5 cut(s)	503, 1068, 1074, 1566, 1866
BccI	CCATC	4 cut(s)	454, 899, 1566, 1837
BceAI	ACGGC	6 cut(s)	262, 396, 532, 607, 925, 1117
BcgI	CGANNNNNNTGC	4 cut(s)	629, 663, 1772, 1806
BciT130I	CCWGG	7 cut(s)	88, 115, 314, 1254, 1422, 1592, 1988
BclI	TGATCA	2 cut(s)	1156, 1357
BcnI	CCSGG	1 cut(s)	1333
BcoDI	GTCTC	7 cut(s)	627, 750, 1021, 1104, 1288, 1710, 1911
BfaI	CTAG	3 cut(s)	581, 1698, 2009
BfmI	CTRYAG	3 cut(s)	1643, 1655, 1815
BfoI	RGCGCY	1 cut(s)	26
BlpI	GCTNAGC	1 cut(s)	1977
Bme1390I	CCNGG	8 cut(s)	88, 115, 314, 1254, 1333, 1422, 1592, 1988
Bme18I	GGWCC	4 cut(s)	69, 235, 310, 778
BmeT110I	CYCGRG	2 cut(s)	710, 1299
BmgT120I	GGNCC	9 cut(s)	69, 159, 235, 310, 464, 465, 778, 991, 1618
BmrFI	CCNGG	8 cut(s)	88, 115, 314, 1254, 1333, 1422, 1592, 1988
BmsI	GCATC	5 cut(s)	519, 696, 1447, 1867, 1954
BpiI	GAAGAC	3 cut(s)	263, 795, 921
BpmI	CTGGAG	1 cut(s)	14
Bpu10I	CCTNAGC	5 cut(s)	503, 1068, 1074, 1566, 1866
Bpu1102I	GCTNAGC	1 cut(s)	1977
BpuMI	CCSGG	1 cut(s)	1333
BsaAI	YACGTR	1 cut(s)	784
BsaHI	GRCGYC	3 cut(s)	23, 110, 636
BsaI	GGTCTC	1 cut(s)	1710
BsaJI	CCNNGG	9 cut(s)	65, 87, 155, 538, 639, 1230, 1420, 1986, 2058
BsaWI	WCCGGW	3 cut(s)	375, 676, 1115
BsaXI	ACNNNNNCTCC	6 cut(s)	68, 98, 542, 572, 1807, 1837
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 120, 1009, 1245
Bse118I	RCCGGY	6 cut(s)	10, 106, 273, 406, 973, 1701
Bse1I	ACTGG	3 cut(s)	295, 500, 1214
Bse3DI	GCAATG	2 cut(s)	1770, 2025
BseBI	CCWGG	7 cut(s)	88, 115, 314, 1254, 1422, 1592, 1988
BseDI	CCNNGG	9 cut(s)	65, 87, 155, 538, 639, 1230, 1420, 1986, 2058
BseGI	GGATG	1 cut(s)	1561
BseLI	CCNNNNNNNGG	4 cut(s)	87, 120, 1009, 1245
BseMI	GCAATG	2 cut(s)	1770, 2025
BseNI	ACTGG	3 cut(s)	295, 500, 1214
BsePI	GCGCGC	1 cut(s)	507
BseRI	GAGGAG	5 cut(s)	642, 645, 1056, 1704, 1815
BseSI	GKGCMC	2 cut(s)	468, 1429
BseX3I	CGGCCG	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	1451
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	6 cut(s)	157, 412, 509, 540, 605, 1232
Bsh1285I	CGRYCG	2 cut(s)	278, 339
BshFI	GGCC	7 cut(s)	144, 160, 277, 466, 579, 992, 1619
BshNI	GGYRCC	1 cut(s)	22
BsiEI	CGRYCG	2 cut(s)	278, 339
BsiHKAI	GWGCWC	1 cut(s)	1429
BsiHKCI	CYCGRG	2 cut(s)	710, 1299
BslFI	GGGAC	3 cut(s)	55, 104, 677
BslI	CCNNNNNNNGG	4 cut(s)	87, 120, 1009, 1245
BsmAI	GTCTC	7 cut(s)	627, 750, 1021, 1104, 1288, 1710, 1911
BsmBI	CGTCTC	4 cut(s)	627, 750, 1021, 1911
BsmFI	GGGAC	3 cut(s)	55, 104, 677
BsmI	GAATGC	1 cut(s)	1768
BsnI	GGCC	7 cut(s)	144, 160, 277, 466, 579, 992, 1619
Bso31I	GGTCTC	1 cut(s)	1710
BsoBI	CYCGRG	2 cut(s)	710, 1299
Bsp120I	GGGCCC	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	468, 1429
Bsp1407I	TGTACA	1 cut(s)	1800
Bsp1720I	GCTNAGC	1 cut(s)	1977
Bsp19I	CCATGG	1 cut(s)	2058
BspANI	GGCC	7 cut(s)	144, 160, 277, 466, 579, 992, 1619
BspFNI	CGCG	6 cut(s)	157, 412, 509, 540, 605, 1232
BspMAI	CTGCAG	2 cut(s)	1647, 1659
BspPI	GGATC	4 cut(s)	837, 1026, 1262, 1283
BspQI	GCTCTTC	1 cut(s)	843
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	1710
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	2 cut(s)	1770, 2025
BsrFI	RCCGGY	6 cut(s)	10, 106, 273, 406, 973, 1701
BsrGI	TGTACA	1 cut(s)	1800
BsrI	ACTGG	3 cut(s)	295, 500, 1214
BssAI	RCCGGY	6 cut(s)	10, 106, 273, 406, 973, 1701
BssECI	CCNNGG	9 cut(s)	65, 87, 155, 538, 639, 1230, 1420, 1986, 2058
BssHII	GCGCGC	1 cut(s)	507
BssNAI	GTATAC	1 cut(s)	1993
BssNI	GRCGYC	3 cut(s)	23, 110, 636
BssT1I	CCWWGG	1 cut(s)	2058
Bst1107I	GTATAC	1 cut(s)	1993
Bst2UI	CCWGG	7 cut(s)	88, 115, 314, 1254, 1422, 1592, 1988
Bst4CI	ACNGT	6 cut(s)	140, 812, 871, 1043, 1431, 1918
Bst6I	CTCTTC	1 cut(s)	843
BstACI	GRCGYC	3 cut(s)	23, 110, 636
BstAPI	GCANNNNNTGC	1 cut(s)	1654
BstAUI	TGTACA	1 cut(s)	1800
BstBAI	YACGTR	1 cut(s)	784
BstDSI	CCRYGG	4 cut(s)	155, 538, 1230, 2058
BstEII	GGTNACC	1 cut(s)	1234
BstF5I	GGATG	1 cut(s)	1561
BstFNI	CGCG	6 cut(s)	157, 412, 509, 540, 605, 1232
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	8 cut(s)	25, 412, 454, 509, 511, 605, 826, 973
BstMAI	GTCTC	7 cut(s)	627, 750, 1021, 1104, 1288, 1710, 1911
BstMCI	CGRYCG	2 cut(s)	278, 339
BstNI	CCWGG	7 cut(s)	88, 115, 314, 1254, 1422, 1592, 1988
BstNSI	RCATGY	3 cut(s)	1438, 1606, 1985
BstPI	GGTNACC	1 cut(s)	1234
BstSCI	CCNGG	8 cut(s)	86, 113, 312, 1252, 1331, 1420, 1590, 1986
BstSFI	CTRYAG	3 cut(s)	1643, 1655, 1815
BstSLI	GKGCMC	2 cut(s)	468, 1429
BstUI	CGCG	6 cut(s)	157, 412, 509, 540, 605, 1232
BstV2I	GAAGAC	3 cut(s)	263, 795, 921
BstZ17I	GTATAC	1 cut(s)	1993
BstZI	CGGCCG	1 cut(s)	275
BsuRI	GGCC	7 cut(s)	144, 160, 277, 466, 579, 992, 1619
BtgI	CCRYGG	4 cut(s)	155, 538, 1230, 2058
BtgZI	GCGATG	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	1561
BtsIMutI	CAGTG	1 cut(s)	1152
CaiI	CAGNNNCTG	1 cut(s)	1937
CfoI	GCGC	8 cut(s)	25, 412, 454, 509, 511, 605, 826, 973
Cfr10I	RCCGGY	6 cut(s)	10, 106, 273, 406, 973, 1701
Cfr13I	GGNCC	9 cut(s)	69, 159, 235, 310, 464, 465, 778, 991, 1618
Cfr42I	CCGCGG	3 cut(s)	158, 541, 1233
CseI	GACGC	3 cut(s)	99, 268, 644
CsiI	ACCWGGT	1 cut(s)	1590
Csp6I	GTAC	4 cut(s)	1088, 1432, 1801, 2032
CviAII	CATG	6 cut(s)	1435, 1603, 1973, 1982, 2041, 2059
CviQI	GTAC	4 cut(s)	1088, 1432, 1801, 2032
DinI	GGCGCC	1 cut(s)	24
DraIII	CACNNNGTG	1 cut(s)	151
EaeI	YGGCCR	2 cut(s)	142, 275
EagI	CGGCCG	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
EciI	GGCGGA	1 cut(s)	544
EclXI	CGGCCG	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	2058
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	1710
Eco32I	GATATC	1 cut(s)	1049
Eco47I	GGWCC	4 cut(s)	69, 235, 310, 778
Eco52I	CGGCCG	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	458
Eco72I	CACGTG	1 cut(s)	784
Eco88I	CYCGRG	2 cut(s)	710, 1299
Eco91I	GGTNACC	1 cut(s)	1234
EcoO109I	RGGNCCY	4 cut(s)	69, 310, 464, 465
EcoO65I	GGTNACC	1 cut(s)	1234
EcoRII	CCWGG	7 cut(s)	86, 113, 312, 1252, 1420, 1590, 1986
EcoRV	GATATC	1 cut(s)	1049
EcoT14I	CCWWGG	1 cut(s)	2058
EcoT22I	ATGCAT	1 cut(s)	1440
EcoT38I	GRGCYC	1 cut(s)	468
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	2058
Esp3I	CGTCTC	4 cut(s)	627, 750, 1021, 1911
FaeI	CATG	6 cut(s)	1438, 1606, 1976, 1985, 2044, 2062
FaqI	GGGAC	3 cut(s)	55, 104, 677
FatI	CATG	6 cut(s)	1434, 1602, 1972, 1981, 2040, 2058
FauI	CCCGC	5 cut(s)	105, 111, 1237, 1615, 2023
FbaI	TGATCA	2 cut(s)	1156, 1357
FblI	GTMKAC	1 cut(s)	1992
FokI	GGATG	1 cut(s)	1548
FriOI	GRGCYC	1 cut(s)	468
FspBI	CTAG	3 cut(s)	581, 1698, 2009
GlaI	GCGC	8 cut(s)	24, 411, 453, 508, 510, 604, 825, 972
GsaI	CCCAGC	1 cut(s)	1455
GsuI	CTGGAG	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	7 cut(s)	144, 160, 277, 466, 579, 992, 1619
HgaI	GACGC	3 cut(s)	99, 268, 644
HhaI	GCGC	8 cut(s)	25, 412, 454, 509, 511, 605, 826, 973
Hin1I	GRCGYC	3 cut(s)	23, 110, 636
Hin1II	CATG	6 cut(s)	1438, 1606, 1976, 1985, 2044, 2062
Hin6I	GCGC	8 cut(s)	23, 410, 452, 507, 509, 603, 824, 971
HinP1I	GCGC	8 cut(s)	23, 410, 452, 507, 509, 603, 824, 971
HincII	GTYRAC	2 cut(s)	565, 735
HindII	GTYRAC	2 cut(s)	565, 735
HphI	GGTGA	4 cut(s)	924, 988, 1436, 1892
Hpy188III	TCNNGA	7 cut(s)	31, 72, 241, 624, 712, 1208, 1325
HpyAV	CCTTC	3 cut(s)	829, 972, 1500
HpyCH4III	ACNGT	6 cut(s)	140, 812, 871, 1043, 1431, 1918
HpyCH4IV	ACGT	3 cut(s)	183, 681, 783
HpyCH4V	TGCA	8 cut(s)	132, 663, 1312, 1345, 1427, 1438, 1645, 1657
HpySE526I	ACGT	3 cut(s)	183, 681, 783
Hsp92I	GRCGYC	3 cut(s)	23, 110, 636
Hsp92II	CATG	6 cut(s)	1438, 1606, 1976, 1985, 2044, 2062
HspAI	GCGC	8 cut(s)	23, 410, 452, 507, 509, 603, 824, 971
KasI	GGCGCC	1 cut(s)	22
KroI	GCCGGC	2 cut(s)	106, 406
KroNI	GCCGGC	2 cut(s)	108, 408
Ksp22I	TGATCA	2 cut(s)	1156, 1357
KspI	CCGCGG	3 cut(s)	158, 541, 1233
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	5 cut(s)	4, 105, 123, 801, 1828
LweI	GCATC	5 cut(s)	519, 696, 1447, 1867, 1954
MabI	ACCWGGT	1 cut(s)	1590
MaeI	CTAG	3 cut(s)	581, 1698, 2009
MaeII	ACGT	3 cut(s)	183, 681, 783
MaeIII	GTNAC	4 cut(s)	331, 806, 1234, 1883
MbiI	CCGCTC	1 cut(s)	100
MboII	GAAGA	5 cut(s)	268, 800, 860, 921, 975
MhlI	GDGCHC	2 cut(s)	468, 1429
MlsI	TGGCCA	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	144
Mly113I	GGCGCC	1 cut(s)	23
MlyI	GAGTC	6 cut(s)	28, 41, 50, 77, 311, 545
MmeI	TCCRAC	3 cut(s)	468, 573, 1686
Mox20I	TGGCCA	1 cut(s)	144
Mph1103I	ATGCAT	1 cut(s)	1440
MreI	CGCCGGCG	1 cut(s)	106
MroNI	GCCGGC	2 cut(s)	106, 406
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	1278
MslI	CAYNNNNRTG	1 cut(s)	1422
Msp20I	TGGCCA	1 cut(s)	144
MspA1I	CMGCKG	8 cut(s)	157, 436, 540, 795, 1232, 1654, 1820, 2054
MspR9I	CCNGG	8 cut(s)	88, 115, 314, 1254, 1333, 1422, 1592, 1988
Mva1269I	GAATGC	1 cut(s)	1768
MvaI	CCWGG	7 cut(s)	88, 115, 314, 1254, 1422, 1592, 1988
MvnI	CGCG	6 cut(s)	157, 412, 509, 540, 605, 1232
NaeI	GCCGGC	2 cut(s)	108, 408
NarI	GGCGCC	1 cut(s)	23
NciI	CCSGG	1 cut(s)	1333
NcoI	CCATGG	1 cut(s)	2058
NgoMIV	GCCGGC	2 cut(s)	106, 406
NlaIII	CATG	6 cut(s)	1438, 1606, 1976, 1985, 2044, 2062
NmeAIII	GCCGAG	4 cut(s)	90, 327, 555, 664
NmuCI	GTSAC	2 cut(s)	331, 806
NsiI	ATGCAT	1 cut(s)	1440
NspI	RCATGY	3 cut(s)	1438, 1606, 1985
OliI	CACNNNNGTG	1 cut(s)	1422
PaeI	GCATGC	1 cut(s)	1985
PaeR7I	CTCGAG	1 cut(s)	710
PauI	GCGCGC	1 cut(s)	507
PciSI	GCTCTTC	1 cut(s)	843
PcsI	WCGNNNNNNNCGW	5 cut(s)	56, 189, 582, 746, 1032
PctI	GAATGC	1 cut(s)	1768
PdiI	GCCGGC	2 cut(s)	108, 408
PflFI	GACNNNGTC	1 cut(s)	484
PfoI	TCCNGGA	1 cut(s)	1252
PleI	GAGTC	6 cut(s)	28, 41, 50, 77, 311, 545
PluTI	GGCGCC	1 cut(s)	26
PmaCI	CACGTG	1 cut(s)	784
PmlI	CACGTG	1 cut(s)	784
PpsI	GAGTC	6 cut(s)	28, 41, 50, 77, 311, 545
Ppu21I	YACGTR	1 cut(s)	784
PpuMI	RGGWCCY	2 cut(s)	69, 310
Psp5II	RGGWCCY	2 cut(s)	69, 310
Psp6I	CCWGG	7 cut(s)	86, 113, 312, 1252, 1420, 1590, 1986
PspCI	CACGTG	1 cut(s)	784
PspEI	GGTNACC	1 cut(s)	1234
PspFI	CCCAGC	1 cut(s)	1451
PspGI	CCWGG	7 cut(s)	86, 113, 312, 1252, 1420, 1590, 1986
PspOMI	GGGCCC	1 cut(s)	464
PspPI	GGNCC	9 cut(s)	69, 159, 235, 310, 464, 465, 778, 991, 1618
PspPPI	RGGWCCY	2 cut(s)	69, 310
PstI	CTGCAG	2 cut(s)	1647, 1659
PstNI	CAGNNNCTG	1 cut(s)	1937
PsyI	GACNNNGTC	1 cut(s)	484
PteI	GCGCGC	1 cut(s)	507
PvuII	CAGCTG	2 cut(s)	1820, 2054
RsaI	GTAC	4 cut(s)	1089, 1433, 1802, 2033
RsaNI	GTAC	4 cut(s)	1088, 1432, 1801, 2032
RseI	CAYNNNNRTG	1 cut(s)	1422
SacII	CCGCGG	3 cut(s)	158, 541, 1233
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	1 cut(s)	1278
Sau96I	GGNCC	9 cut(s)	69, 159, 235, 310, 464, 465, 778, 991, 1618
SchI	GAGTC	6 cut(s)	28, 41, 50, 77, 311, 545
ScrFI	CCNGG	8 cut(s)	88, 115, 314, 1254, 1333, 1422, 1592, 1988
SduI	GDGCHC	2 cut(s)	468, 1429
SexAI	ACCWGGT	1 cut(s)	1590
SfaNI	GCATC	5 cut(s)	519, 696, 1447, 1867, 1954
SfcI	CTRYAG	3 cut(s)	1643, 1655, 1815
SfoI	GGCGCC	1 cut(s)	24
Sfr274I	CTCGAG	1 cut(s)	710
Sfr303I	CCGCGG	3 cut(s)	158, 541, 1233
SgrAI	CRCCGGYG	3 cut(s)	10, 106, 973
SgrBI	CCGCGG	3 cut(s)	158, 541, 1233
SinI	GGWCC	4 cut(s)	69, 235, 310, 778
SlaI	CTCGAG	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	1422
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
SphI	GCATGC	1 cut(s)	1985
SspDI	GGCGCC	1 cut(s)	22
SspMI	CTAG	3 cut(s)	581, 1698, 2009
StyD4I	CCNGG	8 cut(s)	86, 113, 312, 1252, 1331, 1420, 1590, 1986
StyI	CCWWGG	1 cut(s)	2058
TaaI	ACNGT	6 cut(s)	140, 812, 871, 1043, 1431, 1918
TaiI	ACGT	3 cut(s)	186, 684, 786
TaqI	TCGA	9 cut(s)	199, 242, 363, 458, 471, 623, 711, 1572, 1928
TaqII	GACCGA	1 cut(s)	353
TatI	WGTACW	2 cut(s)	1431, 1800
Tru1I	TTAA	1 cut(s)	1278
Tru9I	TTAA	1 cut(s)	1278
TscAI	CASTG	1 cut(s)	1152
TseFI	GTSAC	2 cut(s)	331, 806
Tsp45I	GTSAC	2 cut(s)	331, 806
TspDTI	ATGAA	2 cut(s)	1886, 1968
TspGWI	ACGGA	3 cut(s)	319, 550, 738
TspRI	CASTG	1 cut(s)	1152
Tth111I	GACNNNGTC	1 cut(s)	484
VneI	GTGCAC	1 cut(s)	1425
VpaK11BI	GGWCC	4 cut(s)	69, 235, 310, 778
XapI	RAATTY	2 cut(s)	760, 1119
XceI	RCATGY	3 cut(s)	1438, 1606, 1985
XhoI	CTCGAG	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	1992
XspI	CTAG	3 cut(s)	581, 1698, 2009
Zsp2I	ATGCAT	1 cut(s)	1440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.