Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002013

Physical Location & Seq

Genomic Coordinates Forward (+)

4843004 .. 4851396

Gene Structure 8393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4257 bp

ATGAAGAGGTCCAGAGACGACGTTTTTATGAGCTCGCAACTCAAGCGGCCCATGGTTTCCGCTCGAGGAGAGCCTTCTGGGCAACCCCAGATGATGGCAGCAGCAGCAGCAGCTTCCCAAAAACTAACAACAAATGATGCCTTAGCGTATCTAAAAGCGGTGAAGGATATATTTCAAGACAAGAACAGGGGAAAATACGAAGAATTTCTTGAAGTCATGAAAGACTTCAAGGCCACAAGAATTGACACTGCAGGTGTGATAGAGAGGGTGAAGGATTTATTTAAAGGGCATCGAGAGCTAATATTAGGTTTCAATACCTTCTTGCCAAAGGGATATGAAATAACCCTCCCACTTGATGAAGACCAACAACCTCCTCAAAAGAAGCCTGTTGAATTTGAAGAAGCAATCAATTTCGTGAACAAAATTAAGACACGATTTCAAGGCGACGACCATGTTTATAAATCTTTTTTAGACATTCTGAATATGTACAGAAAGGAAAACAAGTCCATCCAAGAGGTTTACCAGGAGGTTGCTGCACTTTTCCAAGACCACTCAGACTTGCTTGTGGAGTTTACTCACTTTTTACCTGATACTACAGGAACAGCCTCTATTCATCCACCTCATAGAAACTCGATGCTCCATGATAGGAGCTCTGCGATGCCTACTATGCGGCAAATGCATGTGGACAAGAAAGAAAGGACCATGGGTTCTTATGCTGACCATGATCTCAGTGTTGACCGTCCTGATCCTGACCATGATAAAGCTCTAATGAAAGTGGACAAAGATCAAAGGAGGCGTGGCGAGAAGGAGAAGGAGAGGAGAGAAGACAGAGAAAGAAGAGAACGGGATGATAGGGATTTTGACCATGATGGCAGTAGAGACCTCAGTATGCAGCGTTTTTCCCACAAACGGAAATCTGCTCGTAGGATTGAGGACACTGAACAATTGCAGCCAGGTATGTACGGCCAGGAGTTTGCTTTCTGCGAGAAAGTGAAGGAGAAATTACAAAATCCTGAAGATTACCAGGAATTTTTGAAGTGCCTTCATATTTATAGCAAGGAAATTATTACACGCTCTGAATTGCAGTCTTTGGTGGCTGATTTAATTGGAAGATATCCAGAACTTATGGATGGGTTCGATGATTTTTTGGCATGTTGTGAGAAGAAAGATGGGTTCCTTGCCGGTGTCATGAGTAAAAAATCCTTGTGGAATGAAGGACATATACCAAGATCAGTGAAGGTAGAAGATAGGGATAGGGATAGAGATCGTGAAAGGGATGATGGGGTTAAAGATAGAGAGCATGAATCTCGAGAAAGAGATAGACTTGATAAAAATGGTGCCTTTGGAAATAAAGAAGTTGGAGGCCAGAAGAGTTTATTTACCAGCAAGGATAAATATTTGGCAAAACCCATTAACGAGCTTGACCTCTCCAACTGTGAGCGCTGCACTCCGAGTTATCGTCTCCTGCCAAAGAACTATCCAATACCTTCTGCTAGCCAAAGAACAGAGCTTGGTTCTGAAGTATTAAATGATCACTGGGTATCCGTTACTTCTGGAAGTGAGGATTATTCTTTTAAACACATGCGCAAAAACCAGTATGAAGAAAGCCTGTTTCGGTGTGAGGATGACAGGTTTGAGCTGGATATGTTGTTGGAGTCCGTGAACGTAACAACCAAGCGTGTGGAAGAGCTACTAGAAAAGATCAACAACAATACGATTAAGATGGACAGTCCAATTCGTATTGAAGAACACTTCACAGCTTTGAACCTAAGGTGCATTGAGCGATTATATGGTGACCATGGGCTTGATGTGATGGATGTGTTGAGGAAAAATGCTCCACTAGCTTTGCCTGTCATATTGACCCGTTTGAAGCAAAAGCAAGAAGAGTGGGCAAGGTGTCGTTCAGATTTTAATAAAGTTTGGGCTGATATATATGCCAAGAACTATCACAAGTCACTTGATCATCGTAGCTTCTACTTTAAGCAACAAGACACCAAGAGCTTAAGCACAAAAGCCTTGTTGGCAGAGATTAAAGAGATTAGTGAGAAGAAGCGGAAGGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGACGACCGATTATTCCTAATTTGGAATTTGAGTACCCTGACCCAGAAATCCATGAAGATCTGTATCAACTCGTCAAATATTCTTGTGGAGAAGTTTGCACTACCGAACAATTGGATAAAGTTATGAAGATATGGACAACTTTTCTTGAACCAATACTTGGTGTTCCTACACGGCCTCAAGGTGCAGAGGATACTGAAGATGTTGTGAAAGCAAAAAATCTTACCGTAAAGAGTGGTTCTGCAAGTCCGGGAGAGAGTGATGGTAGTCCTGATGCTGATGCTACTTTGACGAATTCCAAACAATTAAATTCATCAAGAAATGGTGATGAAAGCATTCAACCTGAACAGTCAAGTTCTTGCAGGACTTGGACAGTAAATGGGGCTAATGGGGTCAAAGAAGAAAGTTCGCTTGACATTGATCGTGCTGCATGTAAAGGTGATACTTTCTGCAATACCTCTCAACAAGGTAAAGTGCAGAGTAATACATCTACAGCTGATGAAACGTCTGGGGCTAGCAAACTAGACATTTTCAATGAACGATTAGTGAATTCTAATGCATCACTTGCCACTGGGTTGGAGCAAAGTAATGGAAGAACTAATTTAGAACACTCATCAGGGCATAGTCCTACTCCGTCCAGACCTGGTAATGGCACTGTTGATGTTGGGCTGGAGTTACCTTCATCAGAGGTTGGTGATTCTACAAGACCAGGTATTTCCTCAAATGGAGCAATAGCAGAAGGCGCCAAGGGTCTCAGATATCTTGAAGAGTCTGCTAGGCACTTCAAGATTGAAAGAGAAGAAGGCGAAATATCTCCAAATGGAGATTTTGAGGAGGATAATTTTGCAAACTATAGAGAAGCTGGTTCAGAGGCCGTTCAAAAATCAAAGCATGGTACTATCAGCAGGCAATATCAAGCCAGACATGGGGAAGGAGAAATATGTGCTGGAGAGACAGGTGGAGAAAATGAAGCTGATGCCGATGATGAAGGTGAGGAAAGTGCTCCGAGGTCATCGGAGGATAGTGAGAATGCCTCTGAGAATGGTGATGTTTCTGGAAGCGAGTCTGGTGATGGGGAGGAATGTTCTCGTGAAGAGCGTGAGGAAGATGGGGACAATGATGAGCACGATACTAAGGCTGAGAGTGAAGGTGAAGCTGAAGGGATGGCTGATGCCCATGATGTTGAAGGAGATGGAATATCTTTGCCTCTTTCAGAACGTTTTCTCCTGACCGTGAAGCCTCTTGCAAAGTATGTTCCTTCAGCTTTACATGACAAGGAGAAGAAGGACTCTCGGATATTTTACGGAAATGATTCTTTCTATGTGCTATTCAGGCTTCACCAAACATTATATGAGAGAATACAATCAGCAAAGATTAACTCATCATCTGCTGAGAGGAAGTGGCGGGCTGCTTCAAATGATTCGAGCCCTTCAGATTCTTATGCTAGATTCATGAGTGCACTTTACAATTTACTTGACGGTTCTTCTGACAATACAAAATTTGAGGATGATTGTCGAGCCATCATTGGGACACAATCATATCTTCTATTCACATTAGACAAGCTGATCTACAAACTCGTTAAGCAGCTCCAAACTGTTGCCAGTGATGAGATGGACAACAAACTTTTCCAGCTTTATGCATTTGAAAAATCAAGAAAACTGGGAAGATTTGTTGATGTGGTTTATCACGAAAATGCTCGTGTTCTTCTTTATGATGAGAACATTTATCGCATCGAATGTGCATCCTCCCCAACCCGGGTGTCTGTTCAGCTTATGGATTTTGGGCATGATAAGCCTGAAATGACTGCTGTTTCCATGGACCCTAATTTTTCCGCATATCTGCATAATGAATTCCTGTCAGTTCTTCCTGACAAAAAAGAGAAGTCTGGGATCTTCTTGAAGAGGAACAAACACAAGTATAGTAGTGATGAATTGTCTGCAATCTGTGAGGCCATGGAAGGGCTAAAAGTCGCCAATGGTCTGGAGTGTAAGATTGCTTGCCATTCATCCAAGGTCTCGTACGTCTTAGATACAGAAGACTTTCTGTTTCGGACAAAGAAGAAAAGGAAAAGTTTGCACCAGAACAGTTCATGCCTTAACCCGGCTAGGTTTCCTAACGGTTCTAGTAGAGTAGAACGATTTCAGCGGTTGCTTTCGAGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1419

Amino Acids

160.98

Weight (kDa)

5.38

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	65 - 108	3.6e-18	Paired amphipathic helix repeat
PAH	PF02671	151 - 195	1.1e-16	Paired amphipathic helix repeat
PAH	PF02671	339 - 383	4.7e-15	Paired amphipathic helix repeat
Sin3_corepress	PF08295	480 - 572	1.3e-36	Sin3 family co-repressor
Sin3a_C	PF16879	1131 - 1379	1e-47	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24190 AT1G24190 AT1G24190 AT1G70060 AT1G70060
fragaria_vesca	FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300
malus_domestica	MD13G1084700.v1.1 MD16G1083700.v1.1
prunus_persica	Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1
pyrus_communis	pycom13g07320 pycom16g07260
rosa_chinensis	RchiOBHm_Chr4g0444901
rosa_laevigata	RLG00000005790
rosa_multiflora	Rmu_sc0006845.1_g000002 Rmu_sc0013783.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385400
rosa_rugosa	Rorug04G0355800 Rorug04G0355900.1 Rorug04G0356000 Rorug04G0356100
rosa_samantha	Rh4AG417700 Rh4BG429500 Rh4CG444200 Rh4DG425400
rosa_wichuraiana	Rw4G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AarI	CACCTGC	1 cut(s)	242
Acc16I	TGCGCA	1 cut(s)	1586
Acc36I	ACCTGC	1 cut(s)	242
AccB1I	GGYRCC	2 cut(s)	1337, 2834
AccB7I	CCANNNNNTGG	2 cut(s)	94, 2252
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	8 cut(s)	46, 60, 158, 670, 2053, 3496, 3924, 4237
AclI	AACGTT	1 cut(s)	3310
AclWI	GGATC	2 cut(s)	740, 3989
AcoI	YGGCCR	1 cut(s)	964
AcsI	RAATTY	9 cut(s)	203, 392, 1028, 2120, 2386, 2401, 2641, 3590, 3941
AcuI	CTGAAG	6 cut(s)	1035, 1539, 2310, 3270, 3336, 3507
AcyI	GRCGYC	1 cut(s)	2835
AfaI	GTAC	5 cut(s)	488, 962, 2129, 2989, 4112
AfeI	AGCGCT	1 cut(s)	1442
AflII	CTTAAG	1 cut(s)	2002
AjnI	CCWGG	6 cut(s)	522, 952, 966, 1023, 2734, 2800
AjuI	GAANNNNNNNTTGG	2 cut(s)	2235, 2267
AloI	GAACNNNNNNTCC	4 cut(s)	691, 723, 3300, 3332
Alw21I	GWGCWC	6 cut(s)	35, 653, 3097, 3219, 3553, 4253
Alw26I	GTCTC	6 cut(s)	9, 873, 1466, 2849, 3038, 4111
Alw44I	GTGCAC	1 cut(s)	3549
AlwI	GGATC	2 cut(s)	740, 3989
Ama87I	CYCGRG	3 cut(s)	63, 1308, 3846
Aor51HI	AGCGCT	1 cut(s)	1442
AoxI	GGCC	7 cut(s)	47, 231, 964, 1363, 2267, 2964, 4041
ApaLI	GTGCAC	1 cut(s)	3549
ApoI	RAATTY	9 cut(s)	203, 392, 1028, 2120, 2386, 2401, 2641, 3590, 3941
Asp700I	GAANNNNTTC	7 cut(s)	204, 224, 2427, 3312, 3403, 4131, 4230
AspLEI	GCGC	3 cut(s)	1443, 1587, 2837
AspS9I	GGNCC	4 cut(s)	9, 48, 699, 3910
AsuC2I	CCSGG	4 cut(s)	2343, 3847, 3848, 4193
AsuNHI	GCTAGC	2 cut(s)	1493, 2606
AvaI	CYCGRG	3 cut(s)	63, 1308, 3846
AvaII	GGWCC	3 cut(s)	9, 699, 3910
AxyI	CCTNAGG	1 cut(s)	1769
BaeGI	GKGCMC	1 cut(s)	3553
BanI	GGYRCC	2 cut(s)	1337, 2834
BanII	GRGCYC	4 cut(s)	35, 653, 3521, 4253
BarI	GAAGNNNNNNTAC	2 cut(s)	1206, 1238
BauI	CACGAG	2 cut(s)	3180, 3789
BbsI	GAAGAC	3 cut(s)	366, 831, 4134
Bbv12I	GWGCWC	6 cut(s)	35, 653, 3097, 3219, 3553, 4253
BceAI	ACGGC	3 cut(s)	979, 2282, 2951
BcgI	CGANNNNNNTGC	2 cut(s)	1289, 1323
BciT130I	CCWGG	6 cut(s)	524, 954, 968, 1025, 2736, 2802
BciVI	GTATCC	2 cut(s)	1552, 2278
BclI	TGATCA	2 cut(s)	1531, 1960
BcnI	CCSGG	4 cut(s)	2343, 3847, 3848, 4193
BcoDI	GTCTC	6 cut(s)	9, 873, 1466, 2849, 3038, 4111
BfaI	CTAG	9 cut(s)	1494, 1694, 1841, 2607, 2615, 2868, 3537, 4197, 4215
BfmI	CTRYAG	4 cut(s)	249, 594, 2583, 2944
BfoI	RGCGCY	2 cut(s)	1444, 2838
BfrI	CTTAAG	1 cut(s)	2002
BfuAI	ACCTGC	1 cut(s)	242
BfuI	GTATCC	2 cut(s)	1552, 2278
BglI	GCCNNNNNGGC	2 cut(s)	79, 2021
BglII	AGATCT	1 cut(s)	2152
Bme18I	GGWCC	3 cut(s)	9, 699, 3910
BmeT110I	CYCGRG	3 cut(s)	63, 1308, 3846
BmgT120I	GGNCC	4 cut(s)	9, 48, 699, 3910
BmiI	GGNNCC	4 cut(s)	1175, 1339, 2836, 3912
BmrI	ACTGGG	3 cut(s)	1546, 2673, 3761
BmtI	GCTAGC	2 cut(s)	1497, 2610
BmuI	ACTGGG	3 cut(s)	1546, 2673, 3761
BpiI	GAAGAC	3 cut(s)	366, 831, 4134
BplI	GAGNNNNNCTC	2 cut(s)	3110, 3142
BpmI	CTGGAG	3 cut(s)	2783, 3060, 4094
Bpu10I	CCTNAGC	1 cut(s)	142
BpuEI	CTTGAG	2 cut(s)	26, 2256
BpuMI	CCSGG	4 cut(s)	2343, 3847, 3848, 4193
BsaBI	GATNNNNATC	2 cut(s)	1263, 2157
BsaHI	GRCGYC	1 cut(s)	2835
BsaI	GGTCTC	3 cut(s)	873, 2849, 4111
BsaJI	CCNNGG	9 cut(s)	51, 702, 1798, 2838, 3098, 3846, 3906, 4044, 4101
BsaXI	ACNNNNNCTCC	2 cut(s)	3300, 3330
Bse118I	RCCGGY	1 cut(s)	1181
Bse1I	ACTGG	5 cut(s)	1541, 1594, 2668, 3693, 3756
Bse21I	CCTNAGG	1 cut(s)	1769
Bse8I	GATNNNNATC	2 cut(s)	1263, 2157
BseBI	CCWGG	6 cut(s)	524, 954, 968, 1025, 2736, 2802
BseDI	CCNNGG	9 cut(s)	51, 702, 1798, 2838, 3098, 3846, 3906, 4044, 4101
BseJI	GATNNNNATC	2 cut(s)	1263, 2157
BseMII	CTCAG	7 cut(s)	567, 742, 898, 2860, 3120, 3222, 3474
BseNI	ACTGG	5 cut(s)	1541, 1594, 2668, 3693, 3756
BseRI	GAGGAG	4 cut(s)	81, 363, 832, 2939
BseSI	GKGCMC	1 cut(s)	3553
BsgI	GTGCAG	4 cut(s)	519, 1429, 2298, 2588
Bsh1285I	CGRYCG	1 cut(s)	2102
BshFI	GGCC	7 cut(s)	49, 233, 966, 1365, 2269, 2966, 4043
BshNI	GGYRCC	2 cut(s)	1337, 2834
BsiEI	CGRYCG	1 cut(s)	2102
BsiHKAI	GWGCWC	6 cut(s)	35, 653, 3097, 3219, 3553, 4253
BsiHKCI	CYCGRG	3 cut(s)	63, 1308, 3846
BsiSI	CCGG	4 cut(s)	1182, 2342, 3847, 4193
BsiWI	CGTACG	1 cut(s)	4110
BslFI	GGGAC	2 cut(s)	3218, 3634
BsmAI	GTCTC	6 cut(s)	9, 873, 1466, 2849, 3038, 4111
BsmBI	CGTCTC	2 cut(s)	9, 1466
BsmFI	GGGAC	2 cut(s)	3218, 3634
BsmI	GAATGC	2 cut(s)	2427, 3127
BsnI	GGCC	7 cut(s)	49, 233, 966, 1365, 2269, 2966, 4043
Bso31I	GGTCTC	3 cut(s)	873, 2849, 4111
BsoBI	CYCGRG	3 cut(s)	63, 1308, 3846
Bsp1286I	GDGCHC	7 cut(s)	35, 653, 3097, 3219, 3521, 3553, 4253
Bsp1407I	TGTACA	1 cut(s)	486
Bsp19I	CCATGG	5 cut(s)	51, 702, 1798, 3906, 4044
BspACI	CCGC	8 cut(s)	46, 60, 158, 670, 2053, 3496, 3924, 4237
BspANI	GGCC	7 cut(s)	49, 233, 966, 1365, 2269, 2966, 4043
BspCNI	CTCAG	7 cut(s)	566, 741, 897, 2859, 3121, 3223, 3475
BspHI	TCATGA	4 cut(s)	216, 1188, 3543, 4253
BspLI	GGNNCC	4 cut(s)	1175, 1339, 2836, 3912
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	242
BspOI	GCTAGC	2 cut(s)	1497, 2610
BspPI	GGATC	2 cut(s)	740, 3989
BspQI	GCTCTTC	2 cut(s)	1680, 3180
BspT107I	GGYRCC	2 cut(s)	1337, 2834
BspTI	CTTAAG	1 cut(s)	2002
BspTNI	GGTCTC	3 cut(s)	873, 2849, 4111
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	1181
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	5 cut(s)	1541, 1594, 2668, 3693, 3756
BssAI	RCCGGY	1 cut(s)	1181
BssECI	CCNNGG	9 cut(s)	51, 702, 1798, 2838, 3098, 3846, 3906, 4044, 4101
BssNI	GRCGYC	1 cut(s)	2835
BssSI	CACGAG	2 cut(s)	3180, 3789
BssT1I	CCWWGG	7 cut(s)	51, 702, 1798, 2838, 3906, 4044, 4101
Bst2BI	CACGAG	2 cut(s)	3180, 3789
Bst2UI	CCWGG	6 cut(s)	524, 954, 968, 1025, 2736, 2802
Bst6I	CTCTTC	7 cut(s)	832, 1364, 1680, 1878, 2853, 3180, 3986
BstACI	GRCGYC	1 cut(s)	2835
BstAFI	CTTAAG	1 cut(s)	2002
BstAPI	GCANNNNNTGC	1 cut(s)	2657
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	6 cut(s)	35, 1495, 2608, 2999, 3498, 4090
BstDSI	CCRYGG	5 cut(s)	51, 702, 1798, 3906, 4044
BstEII	GGTNACC	1 cut(s)	1793
BstH2I	RGCGCY	2 cut(s)	1444, 2838
BstHHI	GCGC	3 cut(s)	1443, 1587, 2837
BstMAI	GTCTC	6 cut(s)	9, 873, 1466, 2849, 3038, 4111
BstMCI	CGRYCG	1 cut(s)	2102
BstNI	CCWGG	6 cut(s)	524, 954, 968, 1025, 2736, 2802
BstNSI	RCATGY	4 cut(s)	683, 1155, 1585, 2526
BstPI	GGTNACC	1 cut(s)	1793
BstSFI	CTRYAG	4 cut(s)	249, 594, 2583, 2944
BstSLI	GKGCMC	1 cut(s)	3553
BstV2I	GAAGAC	3 cut(s)	366, 831, 4134
BstX2I	RGATCY	2 cut(s)	2152, 3981
BstXI	CCANNNNNNTGG	3 cut(s)	1681, 2668, 4072
BstYI	RGATCY	2 cut(s)	2152, 3981
Bsu36I	CCTNAGG	1 cut(s)	1769
BsuI	GTATCC	2 cut(s)	1552, 2278
BsuRI	GGCC	7 cut(s)	49, 233, 966, 1365, 2269, 2966, 4043
BtgI	CCRYGG	5 cut(s)	51, 702, 1798, 3906, 4044
BtgZI	GCGATG	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	8 cut(s)	246, 736, 936, 1239, 1534, 2661, 2745, 3700
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	6 cut(s)	35, 1495, 2608, 2999, 3498, 4090
CciI	TCATGA	4 cut(s)	216, 1188, 3543, 4253
CfoI	GCGC	3 cut(s)	1443, 1587, 2837
Cfr10I	RCCGGY	1 cut(s)	1181
Cfr13I	GGNCC	4 cut(s)	9, 48, 699, 3910
Cfr9I	CCCGGG	1 cut(s)	3846
CsiI	ACCWGGT	2 cut(s)	2734, 2800
Csp6I	GTAC	5 cut(s)	487, 961, 2128, 2988, 4111
CspCI	CAANNNNNGTGG	6 cut(s)	223, 258, 1827, 1862, 1868, 1903
CviQI	GTAC	5 cut(s)	487, 961, 2128, 2988, 4111
DinI	GGCGCC	1 cut(s)	2836
DraI	TTTAAA	2 cut(s)	283, 1576
EaeI	YGGCCR	1 cut(s)	964
Eam1104I	CTCTTC	7 cut(s)	832, 1364, 1680, 1878, 2853, 3180, 3986
EarI	CTCTTC	7 cut(s)	832, 1364, 1680, 1878, 2853, 3180, 3986
Ecl136II	GAGCTC	3 cut(s)	33, 651, 4251
Eco130I	CCWWGG	7 cut(s)	51, 702, 1798, 2838, 3906, 4044, 4101
Eco24I	GRGCYC	4 cut(s)	35, 653, 3521, 4253
Eco31I	GGTCTC	3 cut(s)	873, 2849, 4111
Eco32I	GATATC	2 cut(s)	1115, 2852
Eco47I	GGWCC	3 cut(s)	9, 699, 3910
Eco47III	AGCGCT	1 cut(s)	1442
Eco53kI	GAGCTC	3 cut(s)	33, 651, 4251
Eco57I	CTGAAG	6 cut(s)	1035, 1539, 2310, 3270, 3336, 3507
Eco81I	CCTNAGG	1 cut(s)	1769
Eco88I	CYCGRG	3 cut(s)	63, 1308, 3846
Eco91I	GGTNACC	1 cut(s)	1793
EcoICRI	GAGCTC	3 cut(s)	33, 651, 4251
EcoO65I	GGTNACC	1 cut(s)	1793
EcoRI	GAATTC	3 cut(s)	2386, 2641, 3941
EcoRII	CCWGG	6 cut(s)	522, 952, 966, 1023, 2734, 2800
EcoRV	GATATC	2 cut(s)	1115, 2852
EcoT14I	CCWWGG	7 cut(s)	51, 702, 1798, 2838, 3906, 4044, 4101
EcoT22I	ATGCAT	3 cut(s)	681, 2653, 3733
EcoT38I	GRGCYC	4 cut(s)	35, 653, 3521, 4253
EgeI	GGCGCC	1 cut(s)	2836
EheI	GGCGCC	1 cut(s)	2836
ErhI	CCWWGG	7 cut(s)	51, 702, 1798, 2838, 3906, 4044, 4101
Esp3I	CGTCTC	2 cut(s)	9, 1466
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	2 cut(s)	3218, 3634
FauI	CCCGC	1 cut(s)	3489
FbaI	TGATCA	2 cut(s)	1531, 1960
FriOI	GRGCYC	4 cut(s)	35, 653, 3521, 4253
FspBI	CTAG	9 cut(s)	1494, 1694, 1841, 2607, 2615, 2868, 3537, 4197, 4215
FspI	TGCGCA	1 cut(s)	1586
GlaI	GCGC	3 cut(s)	1442, 1586, 2836
GsuI	CTGGAG	3 cut(s)	2783, 3060, 4094
HaeII	RGCGCY	2 cut(s)	1444, 2838
HaeIII	GGCC	7 cut(s)	49, 233, 966, 1365, 2269, 2966, 4043
HapII	CCGG	4 cut(s)	1182, 2342, 3847, 4193
HhaI	GCGC	3 cut(s)	1443, 1587, 2837
Hin1I	GRCGYC	1 cut(s)	2835
Hin6I	GCGC	3 cut(s)	1441, 1585, 2835
HinP1I	GCGC	3 cut(s)	1441, 1585, 2835
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HpaII	CCGG	4 cut(s)	1182, 2342, 3847, 4193
Hpy166II	GTNNAC	8 cut(s)	418, 520, 573, 685, 736, 778, 1663, 3551
Hpy8I	GTNNAC	8 cut(s)	418, 520, 573, 685, 736, 778, 1663, 3551
Hpy99I	CGWCG	2 cut(s)	23, 449
HpyCH4IV	ACGT	5 cut(s)	21, 1665, 2597, 3310, 4113
HpySE526I	ACGT	5 cut(s)	21, 1665, 2597, 3310, 4113
Hsp92I	GRCGYC	1 cut(s)	2835
HspAI	GCGC	3 cut(s)	1441, 1585, 2835
KasI	GGCGCC	1 cut(s)	2834
Ksp22I	TGATCA	2 cut(s)	1531, 1960
LguI	GCTCTTC	2 cut(s)	1680, 3180
LmnI	GCTCC	7 cut(s)	642, 648, 1840, 2671, 2819, 3100, 3684
MabI	ACCWGGT	2 cut(s)	2734, 2800
MaeI	CTAG	9 cut(s)	1494, 1694, 1841, 2607, 2615, 2868, 3537, 4197, 4215
MaeII	ACGT	5 cut(s)	21, 1665, 2597, 3310, 4113
MaeIII	GTNAC	5 cut(s)	1546, 1666, 1793, 1953, 2766
MbiI	CCGCTC	1 cut(s)	62
MfeI	CAATTG	2 cut(s)	944, 2204
MflI	RGATCY	2 cut(s)	2152, 3981
MhlI	GDGCHC	7 cut(s)	35, 653, 3097, 3219, 3521, 3553, 4253
Mly113I	GGCGCC	1 cut(s)	2835
MlyI	GAGTC	4 cut(s)	1664, 2870, 3164, 3374
MmeI	TCCRAC	4 cut(s)	1339, 1455, 1632, 2649
Mph1103I	ATGCAT	3 cut(s)	681, 2653, 3733
MroXI	GAANNNNTTC	7 cut(s)	204, 224, 2427, 3312, 3403, 4131, 4230
MslI	CAYNNNNRTG	1 cut(s)	3783
MspA1I	CMGCKG	2 cut(s)	2588, 4237
MspCI	CTTAAG	1 cut(s)	2002
MspI	CCGG	4 cut(s)	1182, 2342, 3847, 4193
MunI	CAATTG	2 cut(s)	944, 2204
Mva1269I	GAATGC	2 cut(s)	2427, 3127
MvaI	CCWGG	6 cut(s)	524, 954, 968, 1025, 2736, 2802
NarI	GGCGCC	1 cut(s)	2835
NciI	CCSGG	4 cut(s)	2343, 3847, 3848, 4193
NcoI	CCATGG	5 cut(s)	51, 702, 1798, 3906, 4044
NheI	GCTAGC	2 cut(s)	1493, 2606
NlaIV	GGNNCC	4 cut(s)	1175, 1339, 2836, 3912
NmuCI	GTSAC	2 cut(s)	1793, 1953
NsbI	TGCGCA	1 cut(s)	1586
NsiI	ATGCAT	3 cut(s)	681, 2653, 3733
NspI	RCATGY	4 cut(s)	683, 1155, 1585, 2526
PaeR7I	CTCGAG	2 cut(s)	63, 1308
PagI	TCATGA	4 cut(s)	216, 1188, 3543, 4253
PaqCI	CACCTGC	1 cut(s)	242
PciSI	GCTCTTC	2 cut(s)	1680, 3180
PcsI	WCGNNNNNNNCGW	1 cut(s)	3187
PctI	GAATGC	2 cut(s)	2427, 3127
PdmI	GAANNNNTTC	7 cut(s)	204, 224, 2427, 3312, 3403, 4131, 4230
PfeI	GAWTC	6 cut(s)	1304, 2789, 3404, 3512, 3527, 3540
Pfl23II	CGTACG	1 cut(s)	4110
PflMI	CCANNNNNTGG	2 cut(s)	94, 2252
PfoI	TCCNGGA	1 cut(s)	2341
PleI	GAGTC	4 cut(s)	1663, 2869, 3163, 3374
PluTI	GGCGCC	1 cut(s)	2838
PpsI	GAGTC	4 cut(s)	1663, 2869, 3163, 3374
PsiI	TTATAA	1 cut(s)	459
Psp124BI	GAGCTC	3 cut(s)	35, 653, 4253
Psp1406I	AACGTT	1 cut(s)	3310
Psp6I	CCWGG	6 cut(s)	522, 952, 966, 1023, 2734, 2800
PspEI	GGTNACC	1 cut(s)	1793
PspGI	CCWGG	6 cut(s)	522, 952, 966, 1023, 2734, 2800
PspLI	CGTACG	1 cut(s)	4110
PspN4I	GGNNCC	4 cut(s)	1175, 1339, 2836, 3912
PspPI	GGNCC	4 cut(s)	9, 48, 699, 3910
PspXI	VCTCGAGB	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	2152, 3981
PvuII	CAGCTG	1 cut(s)	2588
RsaI	GTAC	5 cut(s)	488, 962, 2129, 2989, 4112
RsaNI	GTAC	5 cut(s)	487, 961, 2128, 2988, 4111
RseI	CAYNNNNRTG	1 cut(s)	3783
SacI	GAGCTC	3 cut(s)	35, 653, 4253
SapI	GCTCTTC	2 cut(s)	1680, 3180
Sau96I	GGNCC	4 cut(s)	9, 48, 699, 3910
SchI	GAGTC	4 cut(s)	1664, 2870, 3164, 3374
SduI	GDGCHC	7 cut(s)	35, 653, 3097, 3219, 3521, 3553, 4253
SexAI	ACCWGGT	2 cut(s)	2734, 2800
SfcI	CTRYAG	4 cut(s)	249, 594, 2583, 2944
SfoI	GGCGCC	1 cut(s)	2836
Sfr274I	CTCGAG	2 cut(s)	63, 1308
SinI	GGWCC	3 cut(s)	9, 699, 3910
SlaI	CTCGAG	2 cut(s)	63, 1308
SmaI	CCCGGG	1 cut(s)	3848
SmiMI	CAYNNNNRTG	1 cut(s)	3783
SmlI	CTYRAG	5 cut(s)	41, 63, 1308, 2002, 2271
SmoI	CTYRAG	5 cut(s)	41, 63, 1308, 2002, 2271
SsiI	CCGC	8 cut(s)	46, 60, 158, 670, 2053, 3496, 3924, 4237
SspDI	GGCGCC	1 cut(s)	2834
SspI	AATATT	3 cut(s)	303, 1397, 2174
SspMI	CTAG	9 cut(s)	1494, 1694, 1841, 2607, 2615, 2868, 3537, 4197, 4215
SstI	GAGCTC	3 cut(s)	35, 653, 4253
StyI	CCWWGG	7 cut(s)	51, 702, 1798, 2838, 3906, 4044, 4101
TaiI	ACGT	5 cut(s)	24, 1668, 2600, 3313, 4116
TaqI	TCGA	9 cut(s)	64, 292, 632, 1137, 1309, 3515, 3607, 3825, 4247
TaqII	GACCGA	1 cut(s)	2116
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	2 cut(s)	49, 673
TfiI	GAWTC	6 cut(s)	1304, 2789, 3404, 3512, 3527, 3540
TscAI	CASTG	8 cut(s)	253, 736, 943, 1239, 1541, 2668, 2752, 3700
TseFI	GTSAC	2 cut(s)	1793, 1953
Tsp45I	GTSAC	2 cut(s)	1793, 1953
TspGWI	ACGGA	5 cut(s)	925, 1534, 1648, 2715, 3411
TspMI	CCCGGG	1 cut(s)	3846
TspRI	CASTG	8 cut(s)	253, 736, 943, 1239, 1541, 2668, 2752, 3700
Van91I	CCANNNNNTGG	2 cut(s)	94, 2252
Vha464I	CTTAAG	1 cut(s)	2002
VneI	GTGCAC	1 cut(s)	3549
VpaK11BI	GGWCC	3 cut(s)	9, 699, 3910
XapI	RAATTY	9 cut(s)	203, 392, 1028, 2120, 2386, 2401, 2641, 3590, 3941
XceI	RCATGY	4 cut(s)	683, 1155, 1585, 2526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3700
XhoI	CTCGAG	2 cut(s)	63, 1308
XmaI	CCCGGG	1 cut(s)	3846
XmnI	GAANNNNTTC	7 cut(s)	204, 224, 2427, 3312, 3403, 4131, 4230
XspI	CTAG	9 cut(s)	1494, 1694, 1841, 2607, 2615, 2868, 3537, 4197, 4215
Zsp2I	ATGCAT	3 cut(s)	681, 2653, 3733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.