Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002013

Physical Location & Seq

Genomic Coordinates Forward (+)

5933577 .. 5943086

Gene Structure 9510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1084700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4260 bp

ATGAAGAGGTCCAGAGACGACGTTTTTATGAGCTCGCAACTCAAGCGCCCCATGGTTTCCGCTCGAGGAGAGCCTTCTGGGCAACCCCAGATGATGGCAGCAGCAGCAGCAGCTTCCCAAAAACTAACAACAAATGATGCCTTAGCGTATCTAAAAGCGGTGAAGGATATATTTCAAGACAAGAACAGGGGAAAATACGAAGAATTTCTTGAAGTCATGAAAGACTTCAAGGCCACAAGAATTGACACTGCGGGTGTGATAGAGAGGGTGAAGGATTTATTTAAAGGGCATCGAGAGCTAATATTAGGTTTCAATACCTTCTTGCCAAAGGGATATGAAATAACCCTCCCACTTGATGAAGACCAACAACCTCCTCAAAAGAAGCCTGTTGAATTTGAAGAAGCAATCAATTTCGTGAACAAAATTAAGACACGATTTCAAGGCGACGACCATGTTTATAAATCTTTTTTAGACATTCTGAATATGTACAGAAAGGAAAACAAGTCCATCCAAGAGGTTTACCAGGAGGTTGCTGCACTTTTCCAAGACCACGCAGACTTGCTTGTGGAGTTTACTCACTTTTTACCTGATACTACAGGAACAGCCTCCATTCATCCACCTAATAGAAACTCAATGCTCCGTGATAGGAGCTCTGCGATGCCCACTATGCGGCAAATGCATGTGGACAAGAAAGAAAGGACCATGGGTTCTTATGCTGACCATGATCTCAGTGTTGACCGTCCTGATCCTGACCATGATAAAGCTCTAATGAAAGTGGACAAAGATCAAAGGCGGCGTGGCGAGAAGGAGAAGGAGAGGAGAGAAGACAGAGAAAGAAGAGAACAGGATGATAGGGATTTTGACCATGATGGCAGTAGAGACCTCAGTATGCAGCGTTTTTCTCACAAACGGAAATCTGCTCATAGGATTGAGGACACTGAACAATTGCAGCCAGGTATGTATGGCCAGGAGTTTGCTTTCTGTGAGAAAGTGAAGGAGAAATTACGAAATCCTGAAGATTACCAGGAATTTTTGAAGTGCCTTCATATTTATAGCAAGGAAATTATTACACGCTCTGAATTGCAGTCTTTGGTGGCTGATTTAATTGGAAGATATCCAGAACTTATGGATGGGTTCGATGATTTTTTGGCATGTTGTGAGAAGAAAGATGGGTTCCTTGCCGGTGTCATGAGTAAAAAATCCTTGTGGAATGAAGGACATTTACCCAGATCAGTGAAGGTAGAAGATAGGGATAGGGATAGAGATCGTGAAAGGGATGATGGGGTTAAAGATAGAGAGCATGAAACTCGAGAAAGAGATAGACTTGATAAAAATGGTGCCTTTGGAAATAAAGAAGTTGGAGGCCAGAAGAGTTTATTTACCAGCAAGGATAAATATTTGGCAAAACCCATTAACGAGCTTGACCTCTCCAACTGTGAGCGCTGCACTCCAAGTTATCGTCTCCTGCCAAAGAACTATCCAATACCTTCTGCTAGCCAAAGAACAGAGCTTGGTTCTGAAGTATTAAATGATCACTGGGTATCCGTTACTTCTGGAAGTGAGGATTACTCTTTTAAACACATGCGCAAAAACCAGTATGAAGAAAGCCTGTTTCGGTGTGAGGATGACAGGTTTGAACTGGATATGTTGTTGGAGTCCGTGAATGTAACAACCAAGCGTGTGGAAGAGCTACTAGAAAAGGTCAACAACAATACGATTAAGATGGACAGTCCAATTCGTATTGAAGAACACTTCACAGCTCTGAACCTAAGGTGCATTGAGCGATTATATGGTGACCATGGGCTTGATGTGATGGATGTGTTGAGGAAAAATGCTCCACTAGCTTTGCCTGTCATATTGACCCGTTTGAAGCAAAAGCAAGAAGAGTGGGCAAGGTGTCGTTCGGATTTTAATAAAGTTTGGGCTGATATATATGCCAAGAACTATCACAAGTCACTTGATCATCGTAGCTTCTACTTTAAGCAACAAGACACCAAGAGCTTAAGCACAAAAGCCTTGTTGGCAGAGATTAAAGAGATTAGTGAGAAGAAGCGGAAGGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGACGACCGATTATTCCTAATTTGGAATTTGAGTACCCTGACCCAGAAATCCATGAAGATCTGTATCAACTCGTCAAATATTCTTGTGGAGAAGTTTGCACTACCGAACAATTGGATAAAGTTATGAAGATATGGACAACTTTTCTTGAACCAATACTTGGTGTTCCTACACGGCCTCAAGGTGCAGAGGATACTGAAGATGTTGTGAAATCAAAAAATCTTACCGTAAAGAGGGGTTCTGTGAGTCCGGGAGAGAGTGATGTTAGTCCTGATGCTGATGCTAATGCTACTTTAACGAATTCCAAACAGTTAAATTCATCAAGAAATGGTGATGAAAGCATTCAACCTGAACAGTCAAGTTCTTGCAGGACTTGGACAGTAAATGGGGCTAATGGGGTCAAAGAAGAAAGTTTGCTTGACATTGATCGTGCTGCATGTAAAGGTGATACTTTCTGCAATACCTCCCAACAAGGTAAAGTGCAGAGTAATACATCTACAGCTGATGAAACGTCTGGGGCTAGCAAACAAGACTATTTCAATGAACGATTAGTGAATTCTAATGTATCACTTGCCACTGGGTTGGAGCAAAGTAATGGAAGAACTAATTTAGAACACTCATCAGGGCATAGTCCTACTCCGTCCAGACCTGGTAATGGCACTGTTGATGTTGGGCTGGAGTTACCTTCATCAGAGGTTGGTGATTCTACAAGACCAGGTATTTCCTCAAATGGAGCAATAGCAGAAGGCGCCAAAGGTCTCAGATATCTTGAAGAGTCTGCTAGGCACTTCAAGATTGAAAGAGAAGAAGGCGAAATATCTCCAAATGGAGATTTTGAGGAGGATAATTTTGCAAACTATAGAGAAGCTGGTTCGGAGGCCATTCAAAAATCAAAGCATGGTACTATCAGCAGGCAATATCAAGCCAGACATGGGGAAGAAGAAATATGTGCTGGAGAGACAGGTGGAGAAAATGAAGCTGATGCCGATGATGAAGGTGAGGAAAGTGCTCCGAGGTCATCGGAGGATAGCGAGAATGCCTCTGAGAATGGTGATGTTTCTGGAAGTGAGTCTGGTGACGGGGAGGAATGTTCTCGTGAAGAGCGTGAGGAAGATGGGGACAATGATGAGCACGATACTAAGGCCGAGAGTGAAGGTGAAGCTGAAGGGATGGCTGATGCCCATGATGTTGAAGGAGATGGAATATCTTTGCCTCTTTCAGAACGTTTTCTCCTGACCGTGAAGCCTCTTGCAAAGTATGTTCCTTCAGCTTTACATGACAAGGAGAAGGACTCTCGGATATTTTACGGAAATGATTCTTTCTATGTGCTATTCAGGCTTCACCAAACATTATATGAGAGAATACAATCAGCAAAGATTAACTCATCATCTGCTGAGAGGAAGTGGCGGGCTGCTTCAAATGATTCGAGCCCTTCAGATTCTTATGCTAGATTCATGAGTGCACTTTACAATTTACTTGACGGTTCTTCTGACAATACAAAATTTGAGGATGATTGTCGAGCCATCATTGGGACACAATCGTATCTTCTATTCACATTAGACAAGCTGATCTACAAACTCGTTAAGCAGCTCCAAACTGTTGCCAGTGATGAGATGGACAACAAACTTTTCCAGCTTTATGCATTTGAAAAATCAAGAAAACTGGGAAGATTTGTTGATGTGGTTTATCACGAAAATGCTCGTGTTCTTCTTTACGATGAGAACATTTATCGCATCGAATGTGCATCCTCTCCAACCCGGGTGTCTATTCAGCTTATGGATTTTGGGCATGATAAGCCCGAAATGACTGCTGTTTCCATGGACCCTAATTTTTCCGCATATCTGCATAATGAATTCCTGTCAGTTCTTCCTGACAAAAAAGAGAAGTCCGGGATCTTCTTGAAGAGGAACAAACACAAGTATAATAGTGATGAATTGTCTGCAATCTGTGAGGCCATGGAAGGACTAAAAGTCGCCAATGGTCTGGAGTGTAAGATTGCTTGCCATTCATCCAAGGTCTCGTACGTCTTAGATACAGAAGACTTTCTGTTTCGGACAAAGAAGAAAAGGAAAAGTTTGCACCAGAACGGTTCATGCCATAACCCGGCTAGGTCTCCTAATGGTTCTGGTAGAGTAGAGCGATTTCAGCGGTTGCTTTCGAGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1420

Amino Acids

161.3

Weight (kDa)

5.37

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	65 - 108	3.6e-18	Paired amphipathic helix repeat
PAH	PF02671	151 - 195	1e-16	Paired amphipathic helix repeat
PAH	PF02671	339 - 383	4.7e-15	Paired amphipathic helix repeat
Sin3_corepress	PF08295	480 - 572	3.3e-36	Sin3 family co-repressor
Sin3a_C	PF16879	1132 - 1380	6e-48	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24190 AT1G24190 AT1G24190 AT1G70060 AT1G70060
fragaria_vesca	FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300
malus_domestica	MD13G1084700.v1.1 MD16G1083700.v1.1
prunus_persica	Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1
pyrus_communis	pycom13g07320 pycom16g07260
rosa_chinensis	RchiOBHm_Chr4g0444901
rosa_laevigata	RLG00000005790
rosa_multiflora	Rmu_sc0006845.1_g000002 Rmu_sc0013783.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385400
rosa_rugosa	Rorug04G0355800 Rorug04G0355900.1 Rorug04G0356000 Rorug04G0356100
rosa_samantha	Rh4AG417700 Rh4BG429500 Rh4CG444200 Rh4DG425400
rosa_wichuraiana	Rw4G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
Acc16I	TGCGCA	1 cut(s)	1586
AccB1I	GGYRCC	2 cut(s)	1337, 2840
AccB7I	CCANNNNNTGG	2 cut(s)	94, 2252
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	9 cut(s)	60, 158, 251, 670, 793, 2053, 3499, 3927, 4240
AclI	AACGTT	1 cut(s)	3316
AclWI	GGATC	2 cut(s)	740, 3992
AcoI	YGGCCR	1 cut(s)	964
AcsI	RAATTY	9 cut(s)	203, 392, 1028, 2120, 2392, 2407, 2647, 3593, 3944
AcuI	CTGAAG	6 cut(s)	1035, 1539, 2310, 3276, 3342, 3510
AcyI	GRCGYC	1 cut(s)	2841
AfaI	GTAC	4 cut(s)	488, 2129, 2995, 4115
AfeI	AGCGCT	1 cut(s)	1442
AfiI	CCNNNNNNNGG	8 cut(s)	94, 669, 2252, 2325, 2747, 3024, 3621, 4195
AflII	CTTAAG	1 cut(s)	2002
AhdI	GACNNNNNGTC	1 cut(s)	4061
AjnI	CCWGG	6 cut(s)	522, 952, 966, 1023, 2740, 2806
AjuI	GAANNNNNNNTTGG	2 cut(s)	2235, 2267
AloI	GAACNNNNNNTCC	4 cut(s)	691, 723, 3306, 3338
Alw21I	GWGCWC	6 cut(s)	35, 653, 3103, 3225, 3556, 4256
Alw26I	GTCTC	7 cut(s)	9, 873, 1466, 2855, 3044, 4114, 4209
Alw44I	GTGCAC	1 cut(s)	3552
AlwI	GGATC	2 cut(s)	740, 3992
Ama87I	CYCGRG	3 cut(s)	63, 1308, 3849
Aor51HI	AGCGCT	1 cut(s)	1442
AoxI	GGCC	7 cut(s)	231, 964, 1363, 2267, 2970, 3234, 4044
ApaLI	GTGCAC	1 cut(s)	3552
ApoI	RAATTY	9 cut(s)	203, 392, 1028, 2120, 2392, 2407, 2647, 3593, 3944
Asp700I	GAANNNNTTC	6 cut(s)	204, 224, 2433, 3318, 3406, 4134
AspLEI	GCGC	4 cut(s)	48, 1443, 1587, 2843
AspS9I	GGNCC	3 cut(s)	9, 699, 3913
AsuC2I	CCSGG	5 cut(s)	2343, 3850, 3851, 3982, 4196
AsuNHI	GCTAGC	2 cut(s)	1493, 2612
AvaI	CYCGRG	3 cut(s)	63, 1308, 3849
AvaII	GGWCC	3 cut(s)	9, 699, 3913
AxyI	CCTNAGG	1 cut(s)	1769
BaeGI	GKGCMC	1 cut(s)	3556
BaeI	ACNNNNGTAYC	2 cut(s)	3617, 3650
BalI	TGGCCA	1 cut(s)	966
BanI	GGYRCC	2 cut(s)	1337, 2840
BanII	GRGCYC	4 cut(s)	35, 653, 3524, 4256
BarI	GAAGNNNNNNTAC	2 cut(s)	1206, 1238
BauI	CACGAG	2 cut(s)	3186, 3792
BbsI	GAAGAC	3 cut(s)	366, 831, 4137
Bbv12I	GWGCWC	6 cut(s)	35, 653, 3103, 3225, 3556, 4256
BceAI	ACGGC	1 cut(s)	2282
BcgI	CGANNNNNNTGC	4 cut(s)	1289, 1323, 3881, 3915
BciT130I	CCWGG	6 cut(s)	524, 954, 968, 1025, 2742, 2808
BciVI	GTATCC	2 cut(s)	1552, 2278
BclI	TGATCA	2 cut(s)	1531, 1960
BcnI	CCSGG	5 cut(s)	2343, 3850, 3851, 3982, 4196
BcoDI	GTCTC	7 cut(s)	9, 873, 1466, 2855, 3044, 4114, 4209
BfaI	CTAG	7 cut(s)	1494, 1694, 1841, 2613, 2874, 3540, 4200
BfmI	CTRYAG	3 cut(s)	594, 2589, 2950
BfoI	RGCGCY	3 cut(s)	49, 1444, 2844
BfrI	CTTAAG	1 cut(s)	2002
BfuI	GTATCC	2 cut(s)	1552, 2278
BglI	GCCNNNNNGGC	2 cut(s)	79, 2021
BglII	AGATCT	1 cut(s)	2152
Bme18I	GGWCC	3 cut(s)	9, 699, 3913
BmeRI	GACNNNNNGTC	1 cut(s)	4061
BmeT110I	CYCGRG	3 cut(s)	63, 1308, 3849
BmgT120I	GGNCC	3 cut(s)	9, 699, 3913
BmiI	GGNNCC	4 cut(s)	1175, 1339, 2842, 3915
BmrI	ACTGGG	3 cut(s)	1546, 2679, 3764
BmsI	GCATC	9 cut(s)	127, 298, 648, 2356, 2362, 3064, 3259, 3834, 3845
BmtI	GCTAGC	2 cut(s)	1497, 2616
BmuI	ACTGGG	3 cut(s)	1546, 2679, 3764
BpiI	GAAGAC	3 cut(s)	366, 831, 4137
BplI	GAGNNNNNCTC	6 cut(s)	1553, 1585, 3116, 3148, 3368, 3400
BpmI	CTGGAG	3 cut(s)	2789, 3066, 4097
Bpu10I	CCTNAGC	1 cut(s)	142
BpuEI	CTTGAG	2 cut(s)	26, 2256
BpuMI	CCSGG	5 cut(s)	2343, 3850, 3851, 3982, 4196
BsaBI	GATNNNNATC	2 cut(s)	1263, 2157
BsaHI	GRCGYC	1 cut(s)	2841
BsaI	GGTCTC	4 cut(s)	873, 2855, 4114, 4209
BsaJI	CCNNGG	8 cut(s)	51, 702, 1798, 3104, 3849, 3909, 4047, 4104
BsaXI	ACNNNNNCTCC	2 cut(s)	3306, 3336
Bsc4I	CCNNNNNNNGG	8 cut(s)	94, 669, 2252, 2325, 2747, 3024, 3621, 4195
Bse118I	RCCGGY	1 cut(s)	1181
Bse1I	ACTGG	6 cut(s)	1541, 1594, 1644, 2674, 3696, 3759
Bse21I	CCTNAGG	1 cut(s)	1769
Bse8I	GATNNNNATC	2 cut(s)	1263, 2157
BseBI	CCWGG	6 cut(s)	524, 954, 968, 1025, 2742, 2808
BseDI	CCNNGG	8 cut(s)	51, 702, 1798, 3104, 3849, 3909, 4047, 4104
BseJI	GATNNNNATC	2 cut(s)	1263, 2157
BseLI	CCNNNNNNNGG	8 cut(s)	94, 669, 2252, 2325, 2747, 3024, 3621, 4195
BseMII	CTCAG	5 cut(s)	742, 898, 2866, 3126, 3477
BseNI	ACTGG	6 cut(s)	1541, 1594, 1644, 2674, 3696, 3759
BseRI	GAGGAG	4 cut(s)	81, 363, 832, 2945
BseSI	GKGCMC	1 cut(s)	3556
BsgI	GTGCAG	4 cut(s)	519, 1429, 2298, 2594
Bsh1285I	CGRYCG	1 cut(s)	2102
BshFI	GGCC	7 cut(s)	233, 966, 1365, 2269, 2972, 3236, 4046
BshNI	GGYRCC	2 cut(s)	1337, 2840
BsiEI	CGRYCG	1 cut(s)	2102
BsiHKAI	GWGCWC	6 cut(s)	35, 653, 3103, 3225, 3556, 4256
BsiHKCI	CYCGRG	3 cut(s)	63, 1308, 3849
BsiSI	CCGG	5 cut(s)	1182, 2342, 3850, 3981, 4196
BsiWI	CGTACG	1 cut(s)	4113
BslFI	GGGAC	2 cut(s)	3224, 3637
BslI	CCNNNNNNNGG	8 cut(s)	94, 669, 2252, 2325, 2747, 3024, 3621, 4195
BsmAI	GTCTC	7 cut(s)	9, 873, 1466, 2855, 3044, 4114, 4209
BsmBI	CGTCTC	2 cut(s)	9, 1466
BsmFI	GGGAC	2 cut(s)	3224, 3637
BsmI	GAATGC	2 cut(s)	2433, 3133
BsnI	GGCC	7 cut(s)	233, 966, 1365, 2269, 2972, 3236, 4046
Bso31I	GGTCTC	4 cut(s)	873, 2855, 4114, 4209
BsoBI	CYCGRG	3 cut(s)	63, 1308, 3849
Bsp1286I	GDGCHC	7 cut(s)	35, 653, 3103, 3225, 3524, 3556, 4256
Bsp1407I	TGTACA	1 cut(s)	486
Bsp19I	CCATGG	5 cut(s)	51, 702, 1798, 3909, 4047
BspACI	CCGC	9 cut(s)	60, 158, 251, 670, 793, 2053, 3499, 3927, 4240
BspANI	GGCC	7 cut(s)	233, 966, 1365, 2269, 2972, 3236, 4046
BspCNI	CTCAG	5 cut(s)	741, 897, 2865, 3127, 3478
BspHI	TCATGA	4 cut(s)	216, 1188, 3546, 4256
BspLI	GGNNCC	4 cut(s)	1175, 1339, 2842, 3915
BspOI	GCTAGC	2 cut(s)	1497, 2616
BspPI	GGATC	2 cut(s)	740, 3992
BspQI	GCTCTTC	2 cut(s)	1680, 3186
BspT107I	GGYRCC	2 cut(s)	1337, 2840
BspTI	CTTAAG	1 cut(s)	2002
BspTNI	GGTCTC	4 cut(s)	873, 2855, 4114, 4209
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	1181
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	6 cut(s)	1541, 1594, 1644, 2674, 3696, 3759
BssAI	RCCGGY	1 cut(s)	1181
BssECI	CCNNGG	8 cut(s)	51, 702, 1798, 3104, 3849, 3909, 4047, 4104
BssNI	GRCGYC	1 cut(s)	2841
BssSI	CACGAG	2 cut(s)	3186, 3792
BssT1I	CCWWGG	6 cut(s)	51, 702, 1798, 3909, 4047, 4104
Bst2BI	CACGAG	2 cut(s)	3186, 3792
Bst2UI	CCWGG	6 cut(s)	524, 954, 968, 1025, 2742, 2808
Bst6I	CTCTTC	7 cut(s)	832, 1364, 1680, 1878, 2859, 3186, 3989
BstACI	GRCGYC	1 cut(s)	2841
BstAFI	CTTAAG	1 cut(s)	2002
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	6 cut(s)	35, 1495, 2614, 3005, 3501, 4093
BstDEI	CTNAG	9 cut(s)	142, 728, 884, 1769, 2852, 3135, 3231, 3486, 4120
BstDSI	CCRYGG	5 cut(s)	51, 702, 1798, 3909, 4047
BstEII	GGTNACC	1 cut(s)	1793
BstH2I	RGCGCY	3 cut(s)	49, 1444, 2844
BstHHI	GCGC	4 cut(s)	48, 1443, 1587, 2843
BstMAI	GTCTC	7 cut(s)	9, 873, 1466, 2855, 3044, 4114, 4209
BstMCI	CGRYCG	1 cut(s)	2102
BstNI	CCWGG	6 cut(s)	524, 954, 968, 1025, 2742, 2808
BstNSI	RCATGY	4 cut(s)	683, 1155, 1585, 2532
BstPI	GGTNACC	1 cut(s)	1793
BstSFI	CTRYAG	3 cut(s)	594, 2589, 2950
BstSLI	GKGCMC	1 cut(s)	3556
BstV2I	GAAGAC	3 cut(s)	366, 831, 4137
BstX2I	RGATCY	2 cut(s)	2152, 3984
BstXI	CCANNNNNNTGG	3 cut(s)	1681, 2674, 4075
BstYI	RGATCY	2 cut(s)	2152, 3984
Bsu36I	CCTNAGG	1 cut(s)	1769
BsuI	GTATCC	2 cut(s)	1552, 2278
BsuRI	GGCC	7 cut(s)	233, 966, 1365, 2269, 2972, 3236, 4046
BtgI	CCRYGG	5 cut(s)	51, 702, 1798, 3909, 4047
BtgZI	GCGATG	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	8 cut(s)	246, 736, 936, 1239, 1534, 2667, 2751, 3703
Cac8I	GCNNGC	6 cut(s)	35, 1495, 2614, 3005, 3501, 4093
CciI	TCATGA	4 cut(s)	216, 1188, 3546, 4256
CfoI	GCGC	4 cut(s)	48, 1443, 1587, 2843
Cfr10I	RCCGGY	1 cut(s)	1181
Cfr13I	GGNCC	3 cut(s)	9, 699, 3913
Cfr9I	CCCGGG	1 cut(s)	3849
CsiI	ACCWGGT	2 cut(s)	2740, 2806
Csp6I	GTAC	4 cut(s)	487, 2128, 2994, 4114
CspCI	CAANNNNNGTGG	6 cut(s)	223, 258, 1827, 1862, 1868, 1903
CviQI	GTAC	4 cut(s)	487, 2128, 2994, 4114
DdeI	CTNAG	9 cut(s)	142, 728, 884, 1769, 2852, 3135, 3231, 3486, 4120
DinI	GGCGCC	1 cut(s)	2842
DraI	TTTAAA	2 cut(s)	283, 1576
DriI	GACNNNNNGTC	1 cut(s)	4061
EaeI	YGGCCR	1 cut(s)	964
Eam1104I	CTCTTC	7 cut(s)	832, 1364, 1680, 1878, 2859, 3186, 3989
Eam1105I	GACNNNNNGTC	1 cut(s)	4061
EarI	CTCTTC	7 cut(s)	832, 1364, 1680, 1878, 2859, 3186, 3989
Ecl136II	GAGCTC	3 cut(s)	33, 651, 4254
Eco130I	CCWWGG	6 cut(s)	51, 702, 1798, 3909, 4047, 4104
Eco24I	GRGCYC	4 cut(s)	35, 653, 3524, 4256
Eco31I	GGTCTC	4 cut(s)	873, 2855, 4114, 4209
Eco32I	GATATC	2 cut(s)	1115, 2858
Eco47I	GGWCC	3 cut(s)	9, 699, 3913
Eco47III	AGCGCT	1 cut(s)	1442
Eco53kI	GAGCTC	3 cut(s)	33, 651, 4254
Eco57I	CTGAAG	6 cut(s)	1035, 1539, 2310, 3276, 3342, 3510
Eco81I	CCTNAGG	1 cut(s)	1769
Eco88I	CYCGRG	3 cut(s)	63, 1308, 3849
Eco91I	GGTNACC	1 cut(s)	1793
EcoICRI	GAGCTC	3 cut(s)	33, 651, 4254
EcoO65I	GGTNACC	1 cut(s)	1793
EcoRI	GAATTC	3 cut(s)	2392, 2647, 3944
EcoRII	CCWGG	6 cut(s)	522, 952, 966, 1023, 2740, 2806
EcoRV	GATATC	2 cut(s)	1115, 2858
EcoT14I	CCWWGG	6 cut(s)	51, 702, 1798, 3909, 4047, 4104
EcoT22I	ATGCAT	2 cut(s)	681, 3736
EcoT38I	GRGCYC	4 cut(s)	35, 653, 3524, 4256
EgeI	GGCGCC	1 cut(s)	2842
EheI	GGCGCC	1 cut(s)	2842
ErhI	CCWWGG	6 cut(s)	51, 702, 1798, 3909, 4047, 4104
Esp3I	CGTCTC	2 cut(s)	9, 1466
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	2 cut(s)	3224, 3637
FauI	CCCGC	2 cut(s)	244, 3492
FbaI	TGATCA	2 cut(s)	1531, 1960
FriOI	GRGCYC	4 cut(s)	35, 653, 3524, 4256
FspBI	CTAG	7 cut(s)	1494, 1694, 1841, 2613, 2874, 3540, 4200
FspI	TGCGCA	1 cut(s)	1586
GlaI	GCGC	4 cut(s)	47, 1442, 1586, 2842
GsuI	CTGGAG	3 cut(s)	2789, 3066, 4097
HaeII	RGCGCY	3 cut(s)	49, 1444, 2844
HaeIII	GGCC	7 cut(s)	233, 966, 1365, 2269, 2972, 3236, 4046
HapII	CCGG	5 cut(s)	1182, 2342, 3850, 3981, 4196
HhaI	GCGC	4 cut(s)	48, 1443, 1587, 2843
Hin1I	GRCGYC	1 cut(s)	2841
Hin6I	GCGC	4 cut(s)	46, 1441, 1585, 2841
HinP1I	GCGC	4 cut(s)	46, 1441, 1585, 2841
HincII	GTYRAC	2 cut(s)	736, 1705
HindII	GTYRAC	2 cut(s)	736, 1705
HpaII	CCGG	5 cut(s)	1182, 2342, 3850, 3981, 4196
Hpy166II	GTNNAC	8 cut(s)	418, 520, 573, 685, 736, 778, 1705, 3554
Hpy8I	GTNNAC	8 cut(s)	418, 520, 573, 685, 736, 778, 1705, 3554
Hpy99I	CGWCG	2 cut(s)	23, 449
HpyCH4IV	ACGT	4 cut(s)	21, 2603, 3316, 4116
HpyF3I	CTNAG	9 cut(s)	142, 728, 884, 1769, 2852, 3135, 3231, 3486, 4120
HpySE526I	ACGT	4 cut(s)	21, 2603, 3316, 4116
Hsp92I	GRCGYC	1 cut(s)	2841
HspAI	GCGC	4 cut(s)	46, 1441, 1585, 2841
KasI	GGCGCC	1 cut(s)	2840
Ksp22I	TGATCA	2 cut(s)	1531, 1960
LguI	GCTCTTC	2 cut(s)	1680, 3186
LmnI	GCTCC	7 cut(s)	642, 648, 1840, 2677, 2825, 3106, 3687
LweI	GCATC	9 cut(s)	127, 298, 648, 2356, 2362, 3064, 3259, 3834, 3845
MabI	ACCWGGT	2 cut(s)	2740, 2806
MaeI	CTAG	7 cut(s)	1494, 1694, 1841, 2613, 2874, 3540, 4200
MaeII	ACGT	4 cut(s)	21, 2603, 3316, 4116
MaeIII	GTNAC	6 cut(s)	1546, 1666, 1793, 1953, 2772, 3167
MbiI	CCGCTC	1 cut(s)	62
MfeI	CAATTG	2 cut(s)	944, 2204
MflI	RGATCY	2 cut(s)	2152, 3984
MhlI	GDGCHC	7 cut(s)	35, 653, 3103, 3225, 3524, 3556, 4256
MlsI	TGGCCA	1 cut(s)	966
MluNI	TGGCCA	1 cut(s)	966
Mly113I	GGCGCC	1 cut(s)	2841
MlyI	GAGTC	5 cut(s)	1664, 2347, 2876, 3170, 3377
MmeI	TCCRAC	5 cut(s)	1339, 1455, 1632, 2655, 3869
Mox20I	TGGCCA	1 cut(s)	966
Mph1103I	ATGCAT	2 cut(s)	681, 3736
MroXI	GAANNNNTTC	6 cut(s)	204, 224, 2433, 3318, 3406, 4134
MscI	TGGCCA	1 cut(s)	966
MslI	CAYNNNNRTG	1 cut(s)	3786
Msp20I	TGGCCA	1 cut(s)	966
MspA1I	CMGCKG	2 cut(s)	2594, 4240
MspCI	CTTAAG	1 cut(s)	2002
MspI	CCGG	5 cut(s)	1182, 2342, 3850, 3981, 4196
MunI	CAATTG	2 cut(s)	944, 2204
Mva1269I	GAATGC	2 cut(s)	2433, 3133
MvaI	CCWGG	6 cut(s)	524, 954, 968, 1025, 2742, 2808
NarI	GGCGCC	1 cut(s)	2841
NciI	CCSGG	5 cut(s)	2343, 3850, 3851, 3982, 4196
NcoI	CCATGG	5 cut(s)	51, 702, 1798, 3909, 4047
NheI	GCTAGC	2 cut(s)	1493, 2612
NlaIV	GGNNCC	4 cut(s)	1175, 1339, 2842, 3915
NmeAIII	GCCGAG	1 cut(s)	3262
NmuCI	GTSAC	3 cut(s)	1793, 1953, 3167
NsbI	TGCGCA	1 cut(s)	1586
NsiI	ATGCAT	2 cut(s)	681, 3736
NspI	RCATGY	4 cut(s)	683, 1155, 1585, 2532
PaeR7I	CTCGAG	2 cut(s)	63, 1308
PagI	TCATGA	4 cut(s)	216, 1188, 3546, 4256
PciSI	GCTCTTC	2 cut(s)	1680, 3186
PcsI	WCGNNNNNNNCGW	1 cut(s)	3193
PctI	GAATGC	2 cut(s)	2433, 3133
PdmI	GAANNNNTTC	6 cut(s)	204, 224, 2433, 3318, 3406, 4134
PfeI	GAWTC	5 cut(s)	2795, 3407, 3515, 3530, 3543
Pfl23II	CGTACG	1 cut(s)	4113
PflMI	CCANNNNNTGG	2 cut(s)	94, 2252
PfoI	TCCNGGA	2 cut(s)	2341, 3980
PleI	GAGTC	5 cut(s)	1663, 2346, 2875, 3169, 3377
PluTI	GGCGCC	1 cut(s)	2844
PpsI	GAGTC	5 cut(s)	1663, 2346, 2875, 3169, 3377
PsiI	TTATAA	1 cut(s)	459
Psp124BI	GAGCTC	3 cut(s)	35, 653, 4256
Psp1406I	AACGTT	1 cut(s)	3316
Psp6I	CCWGG	6 cut(s)	522, 952, 966, 1023, 2740, 2806
PspEI	GGTNACC	1 cut(s)	1793
PspGI	CCWGG	6 cut(s)	522, 952, 966, 1023, 2740, 2806
PspLI	CGTACG	1 cut(s)	4113
PspN4I	GGNNCC	4 cut(s)	1175, 1339, 2842, 3915
PspPI	GGNCC	3 cut(s)	9, 699, 3913
PspXI	VCTCGAGB	1 cut(s)	63
PsuI	RGATCY	2 cut(s)	2152, 3984
PvuII	CAGCTG	1 cut(s)	2594
RsaI	GTAC	4 cut(s)	488, 2129, 2995, 4115
RsaNI	GTAC	4 cut(s)	487, 2128, 2994, 4114
RseI	CAYNNNNRTG	1 cut(s)	3786
SacI	GAGCTC	3 cut(s)	35, 653, 4256
SapI	GCTCTTC	2 cut(s)	1680, 3186
Sau96I	GGNCC	3 cut(s)	9, 699, 3913
SchI	GAGTC	5 cut(s)	1664, 2347, 2876, 3170, 3377
SduI	GDGCHC	7 cut(s)	35, 653, 3103, 3225, 3524, 3556, 4256
SexAI	ACCWGGT	2 cut(s)	2740, 2806
SfaNI	GCATC	9 cut(s)	127, 298, 648, 2356, 2362, 3064, 3259, 3834, 3845
SfcI	CTRYAG	3 cut(s)	594, 2589, 2950
SfoI	GGCGCC	1 cut(s)	2842
Sfr274I	CTCGAG	2 cut(s)	63, 1308
SinI	GGWCC	3 cut(s)	9, 699, 3913
SlaI	CTCGAG	2 cut(s)	63, 1308
SmaI	CCCGGG	1 cut(s)	3851
SmiMI	CAYNNNNRTG	1 cut(s)	3786
SmlI	CTYRAG	5 cut(s)	41, 63, 1308, 2002, 2271
SmoI	CTYRAG	5 cut(s)	41, 63, 1308, 2002, 2271
SsiI	CCGC	9 cut(s)	60, 158, 251, 670, 793, 2053, 3499, 3927, 4240
SspDI	GGCGCC	1 cut(s)	2840
SspI	AATATT	3 cut(s)	303, 1397, 2174
SspMI	CTAG	7 cut(s)	1494, 1694, 1841, 2613, 2874, 3540, 4200
SstI	GAGCTC	3 cut(s)	35, 653, 4256
StyI	CCWWGG	6 cut(s)	51, 702, 1798, 3909, 4047, 4104
TaiI	ACGT	4 cut(s)	24, 2606, 3319, 4119
TaqI	TCGA	8 cut(s)	64, 292, 1137, 1309, 3518, 3610, 3828, 4250
TaqII	GACCGA	1 cut(s)	2116
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	2 cut(s)	673, 796
TfiI	GAWTC	5 cut(s)	2795, 3407, 3515, 3530, 3543
TscAI	CASTG	8 cut(s)	253, 736, 943, 1239, 1541, 2674, 2758, 3703
TseFI	GTSAC	3 cut(s)	1793, 1953, 3167
Tsp45I	GTSAC	3 cut(s)	1793, 1953, 3167
TspGWI	ACGGA	6 cut(s)	629, 925, 1534, 1648, 2721, 3414
TspMI	CCCGGG	1 cut(s)	3849
TspRI	CASTG	8 cut(s)	253, 736, 943, 1239, 1541, 2674, 2758, 3703
Van91I	CCANNNNNTGG	2 cut(s)	94, 2252
Vha464I	CTTAAG	1 cut(s)	2002
VneI	GTGCAC	1 cut(s)	3552
VpaK11BI	GGWCC	3 cut(s)	9, 699, 3913
XapI	RAATTY	9 cut(s)	203, 392, 1028, 2120, 2392, 2407, 2647, 3593, 3944
XceI	RCATGY	4 cut(s)	683, 1155, 1585, 2532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3703
XhoI	CTCGAG	2 cut(s)	63, 1308
XmaI	CCCGGG	1 cut(s)	3849
XmnI	GAANNNNTTC	6 cut(s)	204, 224, 2433, 3318, 3406, 4134
XspI	CTAG	7 cut(s)	1494, 1694, 1841, 2613, 2874, 3540, 4200
Zsp2I	ATGCAT	2 cut(s)	681, 3736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.