Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002013

Physical Location & Seq

Genomic Coordinates Reverse (-)

62624297 .. 62631810

Gene Structure 7514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G035800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4296 bp

ATGAAGAGGTCTCGTGACGACGGTTATACAAGCTCGCAAGTTAAACGGCCCATGGTTACCTCTCGAGGCGAGCCCTCGGGGCAGCCGCAGATGATGACAGCAACAGCTTCCCAGAAACTAACAACCAATGATGCCTTATCATATCTAAAGGCGGTGAAGGAGATATTTGAAAACAACAAGGAAAAATACGAAGACTTTCTTGAAGTTATGAAAGACTTCAAAGCTCAGAGAGTTGACACCTCGGGTGTGATACAGAGGGTAAAGGATTTATTTAAAGGGCATCGAGACCTAATATTAGGCTTCAATACCTTCTTGCCGAAGGGATATGAAATCACTCTCCCTCTCGATGACGAACAACCTCCTCAAAAGAAGCCCGTTGAATTTGAAGAAGCTATCAGTTTTGTCAACAAAATTAAGACTCGATTTCAACATGATGATCATGTTTATAAATCCTTTTTGGACATTTTGAATATGTACAGAAAGGAAAACAAGTCCATCTCTGAAGTTTACCAGGAGGTCTCAGCACTTTTTCAAGACCACCCAGACTTACTTGTGGAGTTTACTCACTTTTTACCTGATACTTCAGCAACAGCCTCCACCCAGTTTGCTCCGTCTCAAAGAAACTCAATGCTTCGTGATAGGAGCTCTGCCATGCCCCCTATGAGGCAAATGCATGTTGATAAGAAAGAAAGGCCTATGGGTTCTTACCCTGAGCATGATCTCAGTGTTGACCGTCCTGATCTGGACCATGATAGAGCTCTGATGAAAGCTGAGAAAGAGCAAAGGAGGCACAGAGAAAGACGAGATGATAGGGATTTTGACCATGATGGCAGTAGGGACTTCAACATGCAGCGTTTTCCACACAAACGGAAATCCACTCGTAGGGGTGAAGACTTGGCTACTGACCAATTGCATCAAGGTGGGGAAGACGATGAAAACCTTGGAGCACATCTCATTTCATCTTCTTATGATGATAAAAATTCTGCAAAAAGTATATATGGCTCGGAGAGTGCCTTCTGTGAGAAGGTGAAGGAGAAGTTACGAAATCCTGATGATTACCAGGAGTTTTTGAAGTGCCTCCATATTTATAGCAAGGAAATTATTACCCGGGCTGAATTGCAGTCATTGGTGGGTGATTTACTTGGAAAATATCCAGATCTTATGGATGGGTTCAATGAATTTTTGTCATGTTGTGAGAAGAAAGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAATCTTTGTGGAATGAAGGCAATCTACCAAGACCAGTGAAGGTAGAGGATAAGGAGAAAGATCGAGATCGTGAAAGGGATGATGTGGTTAGAGATAGAGAGCGTGAAAACCGAGAAAGGGATAGACCTGATAGAAATGGTGCCTTTGGAAATAAAGAAATTGGAGGCCAGAAGATCTCTATATTTTCCGGCAAGGACAAATATTTGGCAAAACCTATAAATGAGCTTGACCTCTCTAATTGTGAGCGTTGCACTCCAAGCTATCGTCTTCTGCCAAAGAATTATCCAATACCTTCTGCTAGCCAAAGAACAGAACTTGGGTCTGAAGTACTAAATGATCATTGGGTGTCTGTTACTTCTGGAAGCGAGGATTATTCTTTCAAACACATGCGCAAAAACCAGTATGAAGAAAGCCTGTTTCGGTGTGAAGATGATAGGTTTGAATTAGATATGCTGTTAGAGTCTGTGAATGTAACGACCAAGCGTGTGGAAGAACTATTAGAGAAGGTCAACAACAATACCATTAAGACCGAGAATCCAATCCGTGTAGAAGAATACTTCACAGCTCTGAATCTAAGGTGCGTTGAGCGATTATATGGTGACCACGGGCTTGATGTAATGGATGTGTTGAGGAAAAATGCTCCACTAGCTTTGCCTGTTATATTAACGCGCTTGAAGCAAAAGCAAGAAGAGTGGGCAAGGTGTCGCTCTGATTTTAACAAAGTCTGGGCTGATATATATGCCAAGAACTATCACAAGTCACTTGATCATCGTAGCTTCTACTTCAAGCAACAGGACTCAAAGAGCTTAAGCACCAAAGCCTTGTTGGCAGAGATTAAAGAGATGAGTGAGAAGAAGCGGAAGGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGACGTCCTATTATTCCAAATTTGGAATTCGAGTACCCTGATGCGGACATCCATGAAGATCTGTATCAACTCATCAAATATTCTTGTGGAGAAGTTTGCACAACTGAGCAATTGGACAAAGTTATGAAGATATGGACAACCTTCCTTGAGCCAGTGCTTGGTGTTCCTCCTCGGCCTCAGGTTGCAGAGGATACTGAAGATGTTGTGAAGGCAAAAACTCATGCTGGCAAAAATGGTGCTGTGAGTGGGGGAGAGAGTGATGATAATCCTGATGGTGGGGCTACTGTGACAAATTCTAAACAGTTAAATTCATCGAGAAATGGAGACGAAAGCATTCAACCTGAACAATCAAGCTCTGCAAGAGCTTGGACAGTAAATGGAGCTAATGGGCTCAAAGAAGAAAGTTCTCATGATATTGATCGTGCTACATGTAAAGGTGATACTTTCTGCAATACCTCTCAACAAGGTAAAGTGCAAAGTAATGCATCTACAGCCGATGAAATGTCTGGAGTGAGCAAACAAGACAATTTTAATGAACGATTAGTCAATTCTAATGTATCACTTGCTACTGGCTTGGAGCAAAGCAATGGAAGAACTAATGTGGAAAACTCATCAGGTCTTAGTCCTACTCCTTCCAGACCTGGAAATGGCACTGTTGAGGGTGGGCTTGAGTTACCTTCACGGTCTTCACCAGAGGGTGGTGATTCTACTAGACCAGTTATATCCTCAAATGGAGCAATCACAGAAGCCACGAAAGGTCACAGATATGTGGAAGAGTCGGTTAGACACTTCAAGATTGAAAGAGAAGAAGGTGAAATATCTCCAAATGGAGATTTTGAGGAGGATAATTTTGCAAACTATAGAGAAGCCGGTTCAGAGGCTGTTCAAAAACCAAAGGATGGTGTTTCCAGCAGGCAACTTAAAGGCAGGCATGGGGAAGAAGAAATATGTGGTGGAGATGCAGGTGGAGAAAATGAGGCTGATGCTGATGATGAAGGTGAGGAAAGTGCTCATAGATCATCAGAGGATAGTGAGAATGCTTCTGAGAATGGCGATGTCTCTGGAAGTGAATCTGGTGAGGGAGAGGAATGTTCTCGAGAAGAGCGTGAGGAAGATGGGGACCATGATGAGCATGATACTAAGGCCGAGAGTGAAGGTGAAGCTGAAGGGACGGCCGATGCCCATGATGTTGACGGAGATGGAACTTCTTTACCGCACTCAGAACGTTTTCTACTTTCTGTGAAGCCTCTTGCAAAACATGTTCTTCCAGCTTTACATGACAAGGACAAGGACTCAAGGATTTTCTATGGAAACGATTCTTTCTATGTACTTTTTAGGCTTCACCAAACACTATATGAGAGAATACAATCAGCAAAGATTAACTCGTCATCAGCGGAGAAGAAGTGGCGGGCATCAAATGATACAAGCACTTCTGATTCGTATGCTAGATTCATGAATGCCCTTTACAATTTACTTGACGGTTCTTCTGACAATACAAAATTTGAGGATGATTGTCGAGCTATCATTGGGACTCAGTCATATCTTCTTTTCACATTAGACAAGCTGATCTACAAGCTTGTTAAACAGCTCCAAACAGTCGCCAGTGATGAGATGGATAATAAACTTGTCCAACTATATGCATTTGAAAAATCAAGAAAACCAGGAAGATTTGTGGATGTAGTTTATCACGAAAATGCTCGTGTTCTTCTTCACGATGAGAACATTTATCGCATAGAATGTTTCTCTTTGCCAACCCGGGTGTCTATTCAGCTTATGGATTATGGGAATGATAAGCCTGAAATGACTGCTGTTTCAATGGACCCTAATTTTTCTGCTTATTTGCACAATGATTTTCTCACTGTTCTTCCTGACAAAAGAGAGAAGTCTGGGATCTTCTTGAAGAGGAACAAACGCAAATATGCGAGTTGTGATGATTTGTCTGCTATTTGTCAGGCCATGGAAGGACTTAAAGTCGCCAATGGTCTGGAGTGTAAGATAGCTTGTCATTCATCCAAGGTATCATATGTTTTAGATACAGAAGACTTTTTGTTTCGGACAAAAAGGAGAAGAAAAACTTCGAACAGTTCCTGCCATAACCAGGCTAGGTCTTCTAGTGGTTCAAGTAGAGTAGAGCGGTTTCACCGGTTGCTCTCCGGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1431

Amino Acids

162.19

Weight (kDa)

5.41

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	61 - 105	3e-18	Paired amphipathic helix repeat
PAH	PF02671	147 - 191	2.3e-18	Paired amphipathic helix repeat
PAH	PF02671	352 - 395	1.6e-16	Paired amphipathic helix repeat
Sin3_corepress	PF08295	493 - 585	2.9e-36	Sin3 family co-repressor
Sin3a_C	PF16879	1146 - 1394	1.3e-48	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24190 AT1G24190 AT1G24190 AT1G70060 AT1G70060
fragaria_vesca	FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300 FvH4_4g35300
malus_domestica	MD13G1084700.v1.1 MD16G1083700.v1.1
prunus_persica	Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1 Prupe.1G262300_v2.0.a1
pyrus_communis	pycom13g07320 pycom16g07260
rosa_chinensis	RchiOBHm_Chr4g0444901
rosa_laevigata	RLG00000005790
rosa_multiflora	Rmu_sc0006845.1_g000002 Rmu_sc0013783.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385400
rosa_rugosa	Rorug04G0355800 Rorug04G0355900.1 Rorug04G0356000 Rorug04G0356100
rosa_samantha	Rh4AG417700 Rh4BG429500 Rh4CG444200 Rh4DG425400
rosa_wichuraiana	Rw4G035800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AarI	CACCTGC	1 cut(s)	3086
AatII	GACGTC	1 cut(s)	2140
Acc16I	TGCGCA	1 cut(s)	1625
Acc36I	ACCTGC	1 cut(s)	3086
AccB1I	GGYRCC	1 cut(s)	1373
AccB7I	CCANNNNNTGG	3 cut(s)	2291, 2831, 3032
AccBSI	CCGCTC	1 cut(s)	4267
AccII	CGCG	1 cut(s)	1903
AciI	CCGC	8 cut(s)	86, 152, 2092, 2177, 3347, 3527, 3541, 4267
AclI	AACGTT	1 cut(s)	3358
AclWI	GGATC	1 cut(s)	4031
AcoI	YGGCCR	1 cut(s)	3306
AcsI	RAATTY	8 cut(s)	380, 979, 1178, 2152, 2159, 2425, 2440, 3632
AcuI	CTGAAG	5 cut(s)	522, 567, 1578, 2349, 3318
AcyI	GRCGYC	1 cut(s)	2137
AfaI	GTAC	4 cut(s)	476, 1563, 2168, 3462
AflII	CTTAAG	1 cut(s)	2041
AflIII	ACRYGT	2 cut(s)	2561, 3391
AgeI	ACCGGT	1 cut(s)	4275
AhdI	GACNNNNNGTC	1 cut(s)	4103
AjnI	CCWGG	5 cut(s)	510, 1059, 2773, 3793, 4230
Alw21I	GWGCWC	4 cut(s)	647, 760, 949, 3145
Alw26I	GTCTC	6 cut(s)	15, 279, 523, 618, 2451, 3196
AlwI	GGATC	1 cut(s)	4031
AlwNI	CAGNNNCTG	2 cut(s)	3014, 4221
Ama87I	CYCGRG	6 cut(s)	63, 76, 241, 1107, 3228, 3888
AoxI	GGCC	7 cut(s)	47, 692, 1399, 2306, 3276, 3306, 4086
ApeKI	GCWGC	3 cut(s)	82, 850, 2123
ApoI	RAATTY	8 cut(s)	380, 979, 1178, 2152, 2159, 2425, 2440, 3632
AsiGI	ACCGGT	1 cut(s)	4275
Asp700I	GAANNNNTTC	6 cut(s)	195, 215, 2466, 3360, 3448, 4207
AspLEI	GCGC	2 cut(s)	1626, 1905
AspS9I	GGNCC	4 cut(s)	48, 745, 3253, 3952
AsuC2I	CCSGG	4 cut(s)	1108, 1109, 3889, 3890
AsuII	TTCGAA	1 cut(s)	4211
AsuNHI	GCTAGC	1 cut(s)	1532
AvaI	CYCGRG	6 cut(s)	63, 76, 241, 1107, 3228, 3888
AvaII	GGWCC	3 cut(s)	745, 3253, 3952
AxyI	CCTNAGG	1 cut(s)	2310
BanI	GGYRCC	1 cut(s)	1373
BanII	GRGCYC	4 cut(s)	75, 647, 760, 2526
BarI	GAAGNNNNNNTAC	2 cut(s)	1242, 1274
BauI	CACGAG	2 cut(s)	12, 3831
BbsI	GAAGAC	7 cut(s)	198, 897, 933, 1493, 2811, 4179, 4233
Bbv12I	GWGCWC	4 cut(s)	647, 760, 949, 3145
BbvI	GCAGC	3 cut(s)	94, 862, 2110
BccI	CCATC	9 cut(s)	503, 821, 1160, 1199, 2399, 3026, 3242, 3326, 3739
BceAI	ACGGC	2 cut(s)	62, 3321
BciT130I	CCWGG	5 cut(s)	512, 1061, 2775, 3795, 4232
BciVI	GTATCC	1 cut(s)	2317
BclI	TGATCA	3 cut(s)	436, 1570, 1999
BcnI	CCSGG	4 cut(s)	1108, 1109, 3889, 3890
BcoDI	GTCTC	6 cut(s)	15, 279, 523, 618, 2451, 3196
BfaI	CTAG	6 cut(s)	1533, 1880, 2844, 3579, 4236, 4245
BfmI	CTRYAG	2 cut(s)	2622, 2992
BfrI	CTTAAG	1 cut(s)	2041
BfuAI	ACCTGC	1 cut(s)	3086
BfuI	GTATCC	1 cut(s)	2317
BglI	GCCNNNNNGGC	2 cut(s)	79, 2060
BglII	AGATCT	3 cut(s)	1156, 1407, 2191
BisI	GCNGC	4 cut(s)	83, 86, 851, 2124
BlsI	GCNGC	4 cut(s)	84, 87, 852, 2125
BmcAI	AGTACT	1 cut(s)	1563
Bme1390I	CCNGG	9 cut(s)	512, 1061, 1108, 1109, 2775, 3795, 3889, 3890, 4232
Bme18I	GGWCC	3 cut(s)	745, 3253, 3952
BmeRI	GACNNNNNGTC	1 cut(s)	4103
BmeT110I	CYCGRG	6 cut(s)	63, 76, 241, 1107, 3228, 3888
BmgT120I	GGNCC	4 cut(s)	48, 745, 3253, 3952
BmiI	GGNNCC	4 cut(s)	1211, 1375, 3254, 3954
BmrFI	CCNGG	9 cut(s)	512, 1061, 1108, 1109, 2775, 3795, 3889, 3890, 4232
BmrI	ACTGGG	1 cut(s)	595
BmsI	GCATC	9 cut(s)	121, 289, 922, 2164, 2627, 3082, 3106, 3301, 3554
BmtI	GCTAGC	1 cut(s)	1536
BmuI	ACTGGG	1 cut(s)	595
BpiI	GAAGAC	7 cut(s)	198, 897, 933, 1493, 2811, 4179, 4233
BplI	GAGNNNNNCTC	2 cut(s)	936, 968
BpmI	CTGGAG	2 cut(s)	2661, 4139
Bpu10I	CCTNAGC	1 cut(s)	711
Bpu14I	TTCGAA	1 cut(s)	4211
BpuEI	CTTGAG	3 cut(s)	2300, 2822, 3412
BpuMI	CCSGG	4 cut(s)	1108, 1109, 3889, 3890
BsaBI	GATNNNNATC	4 cut(s)	1299, 2196, 2397, 2550
BsaHI	GRCGYC	1 cut(s)	2137
BsaI	GGTCTC	3 cut(s)	15, 279, 523
BsaWI	WCCGGW	1 cut(s)	4275
BsaXI	ACNNNNNCTCC	2 cut(s)	3521, 3551
Bse118I	RCCGGY	2 cut(s)	3002, 4275
Bse1I	ACTGG	7 cut(s)	601, 1268, 1633, 2285, 2707, 2849, 3735
Bse21I	CCTNAGG	1 cut(s)	2310
Bse3DI	GCAATG	1 cut(s)	2725
Bse8I	GATNNNNATC	4 cut(s)	1299, 2196, 2397, 2550
BseBI	CCWGG	5 cut(s)	512, 1061, 2775, 3795, 4232
BseGI	GGATG	8 cut(s)	1171, 1318, 1861, 2181, 3037, 3646, 3814, 4142
BseJI	GATNNNNATC	4 cut(s)	1299, 2196, 2397, 2550
BseMI	GCAATG	1 cut(s)	2725
BseNI	ACTGG	7 cut(s)	601, 1268, 1633, 2285, 2707, 2849, 3735
BseRI	GAGGAG	3 cut(s)	351, 2292, 2987
BseX3I	CGGCCG	1 cut(s)	3306
BseXI	GCAGC	3 cut(s)	94, 862, 2110
Bsh1236I	CGCG	1 cut(s)	1903
Bsh1285I	CGRYCG	1 cut(s)	3309
BshFI	GGCC	7 cut(s)	49, 694, 1401, 2308, 3278, 3308, 4088
BshNI	GGYRCC	1 cut(s)	1373
BshTI	ACCGGT	1 cut(s)	4275
BsiEI	CGRYCG	1 cut(s)	3309
BsiHKAI	GWGCWC	4 cut(s)	647, 760, 949, 3145
BsiHKCI	CYCGRG	6 cut(s)	63, 76, 241, 1107, 3228, 3888
BsiSI	CCGG	6 cut(s)	1108, 1422, 3003, 3889, 4276, 4287
BslFI	GGGAC	4 cut(s)	851, 3266, 3316, 3676
BsmAI	GTCTC	6 cut(s)	15, 279, 523, 618, 2451, 3196
BsmBI	CGTCTC	2 cut(s)	618, 2451
BsmFI	GGGAC	4 cut(s)	851, 3266, 3316, 3676
BsmI	GAATGC	3 cut(s)	2466, 3175, 3595
BsnI	GGCC	7 cut(s)	49, 694, 1401, 2308, 3278, 3308, 4088
Bso31I	GGTCTC	3 cut(s)	15, 279, 523
BsoBI	CYCGRG	6 cut(s)	63, 76, 241, 1107, 3228, 3888
Bsp119I	TTCGAA	1 cut(s)	4211
Bsp1286I	GDGCHC	6 cut(s)	75, 647, 760, 949, 2526, 3145
Bsp1407I	TGTACA	1 cut(s)	474
Bsp19I	CCATGG	2 cut(s)	51, 4089
BspACI	CCGC	8 cut(s)	86, 152, 2092, 2177, 3347, 3527, 3541, 4267
BspANI	GGCC	7 cut(s)	49, 694, 1401, 2308, 3278, 3308, 4088
BspFNI	CGCG	1 cut(s)	1903
BspHI	TCATGA	4 cut(s)	1224, 2542, 3585, 4292
BspLI	GGNNCC	4 cut(s)	1211, 1375, 3254, 3954
BspMI	ACCTGC	1 cut(s)	3086
BspOI	GCTAGC	1 cut(s)	1536
BspPI	GGATC	1 cut(s)	4031
BspQI	GCTCTTC	1 cut(s)	3228
BspT104I	TTCGAA	1 cut(s)	4211
BspT107I	GGYRCC	1 cut(s)	1373
BspTI	CTTAAG	1 cut(s)	2041
BspTNI	GGTCTC	3 cut(s)	15, 279, 523
BsrBI	CCGCTC	1 cut(s)	4267
BsrDI	GCAATG	1 cut(s)	2725
BsrFI	RCCGGY	2 cut(s)	3002, 4275
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	7 cut(s)	601, 1268, 1633, 2285, 2707, 2849, 3735
BssAI	RCCGGY	2 cut(s)	3002, 4275
BssNI	GRCGYC	1 cut(s)	2137
BssSI	CACGAG	2 cut(s)	12, 3831
BssT1I	CCWWGG	4 cut(s)	51, 940, 4089, 4146
Bst2BI	CACGAG	2 cut(s)	12, 3831
Bst2UI	CCWGG	5 cut(s)	512, 1061, 2775, 3795, 4232
Bst6I	CTCTTC	4 cut(s)	1917, 2901, 3228, 4028
BstACI	GRCGYC	1 cut(s)	2137
BstAFI	CTTAAG	1 cut(s)	2041
BstAUI	TGTACA	1 cut(s)	474
BstBI	TTCGAA	1 cut(s)	4211
BstC8I	GCNNGC	7 cut(s)	35, 71, 1534, 2359, 3047, 3062, 3543
BstDSI	CCRYGG	3 cut(s)	51, 1837, 4089
BstEII	GGTNACC	2 cut(s)	55, 1832
BstF5I	GGATG	8 cut(s)	1171, 1318, 1861, 2181, 3037, 3646, 3814, 4142
BstFNI	CGCG	1 cut(s)	1903
BstHHI	GCGC	2 cut(s)	1626, 1905
BstMAI	GTCTC	6 cut(s)	15, 279, 523, 618, 2451, 3196
BstMCI	CGRYCG	1 cut(s)	3309
BstMWI	GCNNNNNNNGC	8 cut(s)	79, 787, 1491, 1880, 1909, 2060, 2123, 2624
BstNI	CCWGG	5 cut(s)	512, 1061, 2775, 3795, 4232
BstNSI	RCATGY	5 cut(s)	677, 850, 1624, 2565, 3395
BstPI	GGTNACC	2 cut(s)	55, 1832
BstSCI	CCNGG	9 cut(s)	510, 1059, 1106, 1107, 2773, 3793, 3887, 3888, 4230
BstSFI	CTRYAG	2 cut(s)	2622, 2992
BstUI	CGCG	1 cut(s)	1903
BstV1I	GCAGC	3 cut(s)	94, 862, 2110
BstV2I	GAAGAC	7 cut(s)	198, 897, 933, 1493, 2811, 4179, 4233
BstX2I	RGATCY	4 cut(s)	1156, 1407, 2191, 4023
BstXI	CCANNNNNNTGG	2 cut(s)	1720, 4117
BstYI	RGATCY	4 cut(s)	1156, 1407, 2191, 4023
BstZI	CGGCCG	1 cut(s)	3306
Bsu36I	CCTNAGG	1 cut(s)	2310
BsuI	GTATCC	1 cut(s)	2317
BsuRI	GGCC	7 cut(s)	49, 694, 1401, 2308, 3278, 3308, 4088
BtgI	CCRYGG	3 cut(s)	51, 1837, 4089
BtgZI	GCGATG	1 cut(s)	3201
BtsCI	GGATG	8 cut(s)	1171, 1318, 1861, 2181, 3037, 3646, 3814, 4142
BtsIMutI	CAGTG	6 cut(s)	730, 1275, 2292, 2784, 3742, 3990
BveI	ACCTGC	1 cut(s)	3086
Cac8I	GCNNGC	7 cut(s)	35, 71, 1534, 2359, 3047, 3062, 3543
CaiI	CAGNNNCTG	2 cut(s)	3014, 4221
CciI	TCATGA	4 cut(s)	1224, 2542, 3585, 4292
CfoI	GCGC	2 cut(s)	1626, 1905
Cfr10I	RCCGGY	2 cut(s)	3002, 4275
Cfr13I	GGNCC	4 cut(s)	48, 745, 3253, 3952
Cfr9I	CCCGGG	2 cut(s)	1107, 3888
Csp6I	GTAC	4 cut(s)	475, 1562, 2167, 3461
CspAI	ACCGGT	1 cut(s)	4275
CspCI	CAANNNNNGTGG	6 cut(s)	586, 621, 1866, 1901, 1907, 1942
CviQI	GTAC	4 cut(s)	475, 1562, 2167, 3461
DraI	TTTAAA	1 cut(s)	274
DriI	GACNNNNNGTC	1 cut(s)	4103
EaeI	YGGCCR	1 cut(s)	3306
EagI	CGGCCG	1 cut(s)	3306
Eam1104I	CTCTTC	4 cut(s)	1917, 2901, 3228, 4028
Eam1105I	GACNNNNNGTC	1 cut(s)	4103
EarI	CTCTTC	4 cut(s)	1917, 2901, 3228, 4028
Ecl136II	GAGCTC	2 cut(s)	645, 758
EclXI	CGGCCG	1 cut(s)	3306
Eco130I	CCWWGG	4 cut(s)	51, 940, 4089, 4146
Eco147I	AGGCCT	1 cut(s)	694
Eco24I	GRGCYC	4 cut(s)	75, 647, 760, 2526
Eco31I	GGTCTC	3 cut(s)	15, 279, 523
Eco47I	GGWCC	3 cut(s)	745, 3253, 3952
Eco52I	CGGCCG	1 cut(s)	3306
Eco53kI	GAGCTC	2 cut(s)	645, 758
Eco57I	CTGAAG	5 cut(s)	522, 567, 1578, 2349, 3318
Eco81I	CCTNAGG	1 cut(s)	2310
Eco88I	CYCGRG	6 cut(s)	63, 76, 241, 1107, 3228, 3888
Eco91I	GGTNACC	2 cut(s)	55, 1832
EcoICRI	GAGCTC	2 cut(s)	645, 758
EcoO65I	GGTNACC	2 cut(s)	55, 1832
EcoRI	GAATTC	1 cut(s)	2159
EcoRII	CCWGG	5 cut(s)	510, 1059, 2773, 3793, 4230
EcoT14I	CCWWGG	4 cut(s)	51, 940, 4089, 4146
EcoT22I	ATGCAT	3 cut(s)	675, 2620, 3775
EcoT38I	GRGCYC	4 cut(s)	75, 647, 760, 2526
ErhI	CCWWGG	4 cut(s)	51, 940, 4089, 4146
Esp3I	CGTCTC	2 cut(s)	618, 2451
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 4192, 4224
FaqI	GGGAC	4 cut(s)	851, 3266, 3316, 3676
FauI	CCCGC	1 cut(s)	3534
FauNDI	CATATG	1 cut(s)	4156
FbaI	TGATCA	3 cut(s)	436, 1570, 1999
Fnu4HI	GCNGC	4 cut(s)	83, 86, 851, 2124
FokI	GGATG	8 cut(s)	1178, 1325, 1868, 2168, 3044, 3653, 3821, 4129
FriOI	GRGCYC	4 cut(s)	75, 647, 760, 2526
Fsp4HI	GCNGC	4 cut(s)	83, 86, 851, 2124
FspBI	CTAG	6 cut(s)	1533, 1880, 2844, 3579, 4236, 4245
FspI	TGCGCA	1 cut(s)	1625
GlaI	GCGC	2 cut(s)	1625, 1904
GluI	GCNGC	4 cut(s)	83, 86, 851, 2124
GsuI	CTGGAG	2 cut(s)	2661, 4139
HaeIII	GGCC	7 cut(s)	49, 694, 1401, 2308, 3278, 3308, 4088
HapII	CCGG	6 cut(s)	1108, 1422, 3003, 3889, 4276, 4287
HhaI	GCGC	2 cut(s)	1626, 1905
Hin1I	GRCGYC	1 cut(s)	2137
Hin6I	GCGC	2 cut(s)	1624, 1903
HinP1I	GCGC	2 cut(s)	1624, 1903
HincII	GTYRAC	5 cut(s)	235, 406, 730, 1744, 3325
HindII	GTYRAC	5 cut(s)	235, 406, 730, 1744, 3325
HindIII	AAGCTT	1 cut(s)	3707
HpaII	CCGG	6 cut(s)	1108, 1422, 3003, 3889, 4276, 4287
Hpy166II	GTNNAC	7 cut(s)	235, 406, 508, 561, 730, 1744, 3325
Hpy8I	GTNNAC	7 cut(s)	235, 406, 508, 561, 730, 1744, 3325
Hpy99I	CGWCG	1 cut(s)	23
HpyCH4IV	ACGT	2 cut(s)	2137, 3358
HpyF10VI	GCNNNNNNNGC	8 cut(s)	79, 787, 1491, 1880, 1909, 2060, 2123, 2624
HpySE526I	ACGT	2 cut(s)	2137, 3358
Hsp92I	GRCGYC	1 cut(s)	2137
HspAI	GCGC	2 cut(s)	1624, 1903
Ksp22I	TGATCA	3 cut(s)	436, 1570, 1999
LguI	GCTCTTC	1 cut(s)	3228
LmnI	GCTCC	8 cut(s)	613, 642, 944, 1879, 2513, 2710, 2867, 3726
Lsp1109I	GCAGC	3 cut(s)	94, 862, 2110
LweI	GCATC	9 cut(s)	121, 289, 922, 2164, 2627, 3082, 3106, 3301, 3554
MaeI	CTAG	6 cut(s)	1533, 1880, 2844, 3579, 4236, 4245
MaeII	ACGT	2 cut(s)	2137, 3358
MbiI	CCGCTC	1 cut(s)	4267
MfeI	CAATTG	2 cut(s)	908, 2243
MflI	RGATCY	4 cut(s)	1156, 1407, 2191, 4023
MhlI	GDGCHC	6 cut(s)	75, 647, 760, 949, 2526, 3145
MlyI	GAGTC	6 cut(s)	412, 1703, 2024, 2918, 3419, 3658
MmeI	TCCRAC	1 cut(s)	3787
Mph1103I	ATGCAT	3 cut(s)	675, 2620, 3775
MroXI	GAANNNNTTC	6 cut(s)	195, 215, 2466, 3360, 3448, 4207
MslI	CAYNNNNRTG	3 cut(s)	918, 2898, 3825
MspA1I	CMGCKG	1 cut(s)	3527
MspCI	CTTAAG	1 cut(s)	2041
MspI	CCGG	6 cut(s)	1108, 1422, 3003, 3889, 4276, 4287
MspR9I	CCNGG	9 cut(s)	512, 1061, 1108, 1109, 2775, 3795, 3889, 3890, 4232
MunI	CAATTG	2 cut(s)	908, 2243
Mva1269I	GAATGC	3 cut(s)	2466, 3175, 3595
MvaI	CCWGG	5 cut(s)	512, 1061, 2775, 3795, 4232
MvnI	CGCG	1 cut(s)	1903
MwoI	GCNNNNNNNGC	8 cut(s)	79, 787, 1491, 1880, 1909, 2060, 2123, 2624
NciI	CCSGG	4 cut(s)	1108, 1109, 3889, 3890
NcoI	CCATGG	2 cut(s)	51, 4089
NdeI	CATATG	1 cut(s)	4156
NheI	GCTAGC	1 cut(s)	1532
NlaIV	GGNNCC	4 cut(s)	1211, 1375, 3254, 3954
NmeAIII	GCCGAG	2 cut(s)	2284, 3304
NmuCI	GTSAC	5 cut(s)	14, 1832, 1992, 2419, 2891
NsbI	TGCGCA	1 cut(s)	1625
NsiI	ATGCAT	3 cut(s)	675, 2620, 3775
NspI	RCATGY	5 cut(s)	677, 850, 1624, 2565, 3395
NspV	TTCGAA	1 cut(s)	4211
PaeR7I	CTCGAG	2 cut(s)	63, 3228
PagI	TCATGA	4 cut(s)	1224, 2542, 3585, 4292
PaqCI	CACCTGC	1 cut(s)	3086
PceI	AGGCCT	1 cut(s)	694
PciI	ACATGT	2 cut(s)	2561, 3391
PciSI	GCTCTTC	1 cut(s)	3228
PcsI	WCGNNNNNNNCGW	1 cut(s)	3235
PctI	GAATGC	3 cut(s)	2466, 3175, 3595
PdmI	GAANNNNTTC	6 cut(s)	195, 215, 2466, 3360, 3448, 4207
PfeI	GAWTC	7 cut(s)	1768, 1804, 2837, 3203, 3449, 3569, 3582
PflFI	GACNNNGTC	1 cut(s)	3667
PflMI	CCANNNNNTGG	3 cut(s)	2291, 2831, 3032
PinAI	ACCGGT	1 cut(s)	4275
PkrI	GCNGC	4 cut(s)	84, 87, 852, 2125
PleI	GAGTC	6 cut(s)	412, 1702, 2024, 2917, 3419, 3658
PpsI	GAGTC	6 cut(s)	412, 1702, 2024, 2917, 3419, 3658
PscI	ACATGT	2 cut(s)	2561, 3391
PsiI	TTATAA	1 cut(s)	447
Psp124BI	GAGCTC	2 cut(s)	647, 760
Psp1406I	AACGTT	1 cut(s)	3358
Psp6I	CCWGG	5 cut(s)	510, 1059, 2773, 3793, 4230
PspEI	GGTNACC	2 cut(s)	55, 1832
PspGI	CCWGG	5 cut(s)	510, 1059, 2773, 3793, 4230
PspN4I	GGNNCC	4 cut(s)	1211, 1375, 3254, 3954
PspPI	GGNCC	4 cut(s)	48, 745, 3253, 3952
PsrI	GAACNNNNNNTAC	2 cut(s)	3348, 3380
PstNI	CAGNNNCTG	2 cut(s)	3014, 4221
PsuI	RGATCY	4 cut(s)	1156, 1407, 2191, 4023
PsyI	GACNNNGTC	1 cut(s)	3667
RsaI	GTAC	4 cut(s)	476, 1563, 2168, 3462
RsaNI	GTAC	4 cut(s)	475, 1562, 2167, 3461
RseI	CAYNNNNRTG	3 cut(s)	918, 2898, 3825
SacI	GAGCTC	2 cut(s)	647, 760
SapI	GCTCTTC	1 cut(s)	3228
SatI	GCNGC	4 cut(s)	83, 86, 851, 2124
Sau96I	GGNCC	4 cut(s)	48, 745, 3253, 3952
ScaI	AGTACT	1 cut(s)	1563
SchI	GAGTC	6 cut(s)	412, 1703, 2024, 2918, 3419, 3658
ScrFI	CCNGG	9 cut(s)	512, 1061, 1108, 1109, 2775, 3795, 3889, 3890, 4232
SduI	GDGCHC	6 cut(s)	75, 647, 760, 949, 2526, 3145
SfaNI	GCATC	9 cut(s)	121, 289, 922, 2164, 2627, 3082, 3106, 3301, 3554
SfcI	CTRYAG	2 cut(s)	2622, 2992
Sfr274I	CTCGAG	2 cut(s)	63, 3228
SfuI	TTCGAA	1 cut(s)	4211
SinI	GGWCC	3 cut(s)	745, 3253, 3952
SlaI	CTCGAG	2 cut(s)	63, 3228
SmaI	CCCGGG	2 cut(s)	1109, 3890
SmiMI	CAYNNNNRTG	3 cut(s)	918, 2898, 3825
SmlI	CTYRAG	6 cut(s)	63, 2041, 2279, 2801, 3228, 3427
SmoI	CTYRAG	6 cut(s)	63, 2041, 2279, 2801, 3228, 3427
SseBI	AGGCCT	1 cut(s)	694
SsiI	CCGC	8 cut(s)	86, 152, 2092, 2177, 3347, 3527, 3541, 4267
SspI	AATATT	3 cut(s)	294, 1436, 2213
SspMI	CTAG	6 cut(s)	1533, 1880, 2844, 3579, 4236, 4245
SstI	GAGCTC	2 cut(s)	647, 760
StuI	AGGCCT	1 cut(s)	694
StyD4I	CCNGG	9 cut(s)	510, 1059, 1106, 1107, 2773, 3793, 3887, 3888, 4230
StyI	CCWWGG	4 cut(s)	51, 940, 4089, 4146
TaiI	ACGT	2 cut(s)	2140, 3361
TaqII	GACCGA	1 cut(s)	1778
TatI	WGTACW	3 cut(s)	474, 1561, 3460
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	7 cut(s)	1768, 1804, 2837, 3203, 3449, 3569, 3582
TscAI	CASTG	6 cut(s)	730, 1275, 2292, 2791, 3742, 3997
TseFI	GTSAC	5 cut(s)	14, 1832, 1992, 2419, 2891
TseI	GCWGC	3 cut(s)	82, 850, 2123
Tsp45I	GTSAC	5 cut(s)	14, 1832, 1992, 2419, 2891
TspGWI	ACGGA	4 cut(s)	600, 883, 1766, 3342
TspMI	CCCGGG	2 cut(s)	1107, 3888
TspRI	CASTG	6 cut(s)	730, 1275, 2292, 2791, 3742, 3997
Tth111I	GACNNNGTC	1 cut(s)	3667
Van91I	CCANNNNNTGG	3 cut(s)	2291, 2831, 3032
Vha464I	CTTAAG	1 cut(s)	2041
VpaK11BI	GGWCC	3 cut(s)	745, 3253, 3952
XapI	RAATTY	8 cut(s)	380, 979, 1178, 2152, 2159, 2425, 2440, 3632
XceI	RCATGY	5 cut(s)	677, 850, 1624, 2565, 3395
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2056, 3742
XhoI	CTCGAG	2 cut(s)	63, 3228
XmaI	CCCGGG	2 cut(s)	1107, 3888
XmnI	GAANNNNTTC	6 cut(s)	195, 215, 2466, 3360, 3448, 4207
XspI	CTAG	6 cut(s)	1533, 1880, 2844, 3579, 4236, 4245
ZraI	GACGTC	1 cut(s)	2138
ZrmI	AGTACT	1 cut(s)	1563
Zsp2I	ATGCAT	3 cut(s)	675, 2620, 3775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.