AT1G72060

Potato type II proteinase inhibitor family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006762
Physical Location & Seq
Forward (+)
27118177 .. 27119011
835 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72060.1

Sequence Viewer

Length: 246 bp
ATGGTTACATACAAGATTTGGGTGATGTCTTTCATCATAGCAGGAGCTATTTTAGGAGGAATAATCCCTGGAGTTACTACAACAAAGACAGCGATCGCGTGTCCTCTCTATTGCTTACAAGTAGAGTACATGACATGTCCTTCCTCCGGCGCTGACAAGCTTCCTCCAAGATGCAACTGTTGTCTTGCTCCCAAAAATTGTACTCTCCATCTCTCTGATTCTACTACTATCCATTGTAGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prot_inhib_II

Protein Analysis

81

Amino Acids

8.67

Weight (kDa)

8.47

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_inhib_II PF02428 33 - 77 7.3e-12 Potato type II proteinase inhibitor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 98
AfaI GTAC 2 cut(s) 128, 202
AfiI CCNNNNNNNGG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 134
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 47, 160
AluI AGCT 2 cut(s) 47, 160
AsiSI GCGATCGC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 34
BccI CCATC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 96
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 146
Bsp143I GATC 1 cut(s) 93
BspFNI CGCG 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 179
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMCI CGRYCG 1 cut(s) 96
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 67
BstUI CGCG 1 cut(s) 98
CfoI GCGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 127, 201
CviAII CATG 2 cut(s) 130, 135
CviJI RGCY 2 cut(s) 47, 160
CviKI_1 RGCY 2 cut(s) 47, 160
CviQI GTAC 2 cut(s) 127, 201
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 2 cut(s) 133, 138
FaiI YATR 4 cut(s) 10, 38, 131, 136
FatI CATG 2 cut(s) 129, 134
GlaI GCGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 153
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 152
Hin1II CATG 2 cut(s) 133, 138
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 1 cut(s) 174
Hsp92II CATG 2 cut(s) 133, 138
HspAI GCGC 1 cut(s) 150
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 44, 193
LpnPI CCDG 4 cut(s) 27, 54, 81, 160
LweI GCATC 1 cut(s) 161
MaeIII GTNAC 2 cut(s) 4, 73
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MluCI AATT 1 cut(s) 196
MnlI CCTC 4 cut(s) 50, 114, 154, 174
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
MvnI CGCG 1 cut(s) 98
NdeII GATC 1 cut(s) 93
NlaIII CATG 2 cut(s) 133, 138
NspI RCATGY 1 cut(s) 138
PciI ACATGT 1 cut(s) 134
PfeI GAWTC 1 cut(s) 218
Ple19I CGATCG 1 cut(s) 96
PscI ACATGT 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PvuI CGATCG 1 cut(s) 96
RgaI GCGATCGC 1 cut(s) 96
RsaI GTAC 2 cut(s) 128, 202
RsaNI GTAC 2 cut(s) 127, 201
Sau3AI GATC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 69
SetI ASST 2 cut(s) 49, 162
SfaAI GCGATCGC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 161
SgfI GCGATCGC 1 cut(s) 96
Sse9I AATT 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 179
TasI AATT 1 cut(s) 196
TatI WGTACW 2 cut(s) 126, 200
TfiI GAWTC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 22
XceI RCATGY 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.