FvH4_6g07490

Proteinase inhibitor type-2 CEVI57-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006762
Physical Location & Seq
Forward (+)
4496860 .. 4497543
684 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07490.t1

Sequence Viewer

Length: 240 bp
ATGGCTACAGGCAAGAGTATTGGTGCAATAATTCTTCTCCTTGTTTGCGGTTCAATCCTACTGGGTATGAATCCAACTGAGGCCAAAGTCTGCCCTCAAGTTTGCTACGAGGCAGCTTATATGACTTGCCCGTCTTCAGGCCTTACTCATCTCTCACCATCCTGCAACTGTTGCTTTGCTCCGGCAGTCGGCTGCTCCATTTACAACTCCGATGGAACTAAGATCTGTACTGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prot_inhib_II

Protein Analysis

80

Amino Acids

8.07

Weight (kDa)

6.48

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_inhib_II PF02428 29 - 77 2.7e-13 Potato type II proteinase inhibitor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 130
AciI CCGC 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 137, 188
AgsI TTSAA 1 cut(s) 54
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
AoxI GGCC 2 cut(s) 81, 139
ApeKI GCWGC 2 cut(s) 113, 192
AsuHPI GGTGA 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 125, 179
BccI CCATC 2 cut(s) 166, 206
BfmI CTRYAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 222
BisI GCNGC 2 cut(s) 114, 193
BlsI GCNGC 2 cut(s) 115, 194
BmrI ACTGGG 1 cut(s) 71
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 188
Bse1I ACTGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 2 cut(s) 137, 188
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 66
BseXI GCAGC 2 cut(s) 125, 179
BshFI GGCC 2 cut(s) 83, 141
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 137, 188
BsnI GGCC 2 cut(s) 83, 141
Bsp143I GATC 1 cut(s) 222
BspACI CCGC 1 cut(s) 48
BspANI GGCC 2 cut(s) 83, 141
BspCNI CTCAG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 66
BssMI GATC 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 78, 219
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 1 cut(s) 225
BstMBI GATC 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 125, 179
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BsuRI GGCC 2 cut(s) 83, 141
BtsCI GGATG 1 cut(s) 158
Csp6I GTAC 1 cut(s) 228
CviJI RGCY 5 cut(s) 5, 83, 116, 141, 192
CviKI_1 RGCY 5 cut(s) 5, 83, 116, 141, 192
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 78, 219
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
DrdI GACNNNNNNGTC 1 cut(s) 130
DseDI GACNNNNNNGTC 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 120
FaiI YATR 3 cut(s) 68, 120, 122
Fnu4HI GCNGC 2 cut(s) 114, 193
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 2 cut(s) 114, 193
GluI GCNGC 2 cut(s) 114, 193
HaeIII GGCC 2 cut(s) 83, 141
HapII CCGG 1 cut(s) 182
HinfI GANTC 1 cut(s) 70
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 26, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 78, 219
Kzo9I GATC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 184, 200
LpnPI CCDG 4 cut(s) 47, 123, 175, 195
Lsp1109I GCAGC 2 cut(s) 125, 179
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 2 cut(s) 26, 126
MflI RGATCY 1 cut(s) 222
MluCI AATT 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 3 cut(s) 73, 103, 105
MspI CCGG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 171
NdeII GATC 1 cut(s) 222
PceI AGGCCT 1 cut(s) 141
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 2 cut(s) 115, 194
PsuI RGATCY 1 cut(s) 222
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SatI GCNGC 2 cut(s) 114, 193
Sau3AI GATC 1 cut(s) 222
SetI ASST 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 1 cut(s) 30
SseBI AGGCCT 1 cut(s) 141
SsiI CCGC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 141
TaaI ACNGT 1 cut(s) 170
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 227
TfiI GAWTC 1 cut(s) 70
TseI GCWGC 2 cut(s) 113, 192
TspDTI ATGAA 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.