Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004842.1

Orthogroup ID

OG0006762

Physical Location & Seq

Genomic Coordinates Forward (+)

100153 .. 100673

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004842.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

atgggtgcaatagttcttctctttatttgtggttcaatcctactgggtatgaatccaactgaggccaaagtttgcattcaaatttgctacgaggcagcttatatgacttgcccgtcttcaggctctacgcatctttcgccatcttgcaactgttgcttagctccggaggtcggctgcaaaatttacaactctgacggaactcaaatctgtactagtacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prot_inhib_II

Protein Analysis

73

Amino Acids

7.63

Weight (kDa)

4.83

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72060
fragaria_vesca	FvH4_5g32140 FvH4_5g32170 FvH4_5g32180 FvH4_6g07490
prunus_persica	Prupe.1G552600_v2.0.a1 Prupe.1G552700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0228201 RchiOBHm_Chr7g0228221 RchiOBHm_Chr7g0228231 RchiOBHm_Chr7g0228301 RchiOBHm_Chr7g0228331
rosa_laevigata	RLG00000001573
rosa_multiflora	Rmu_sc0004842.1_g000010 Rmu_sc0004842.1_g000019 Rmu_sc0004842.1_g000023
rosa_roxburghii	Rroxscaffold_3G00231260 Rroxscaffold_3G00231290
rosa_rugosa	Rorug07G0247000 Rorug07G0247200
rosa_samantha	Rh7AG401100 Rh7AG401400 Rh7BG382600 Rh7CG419900 Rh7CG420300 Rh7DG397000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	112
AccIII	TCCGGA	1 cut(s)	163
AcsI	RAATTY	2 cut(s)	81, 180
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	211, 217
AfiI	CCNNNNNNNGG	2 cut(s)	119, 170
AgsI	TTSAA	2 cut(s)	36, 80
AhlI	ACTAGT	1 cut(s)	212
AluBI	AGCT	2 cut(s)	98, 161
AluI	AGCT	2 cut(s)	98, 161
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	95, 174
ApoI	RAATTY	2 cut(s)	81, 180
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	107, 161
BccI	CCATC	1 cut(s)	148
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	1 cut(s)	213
BisI	GCNGC	2 cut(s)	96, 175
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	2 cut(s)	97, 176
BmcAI	AGTACT	1 cut(s)	217
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 170
Bse1I	ACTGG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	119, 170
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	107, 161
BshFI	GGCC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	119, 170
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	65
Bsp13I	TCCGGA	1 cut(s)	163
Bsp1720I	GCTNAGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	52
BspEI	TCCGGA	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	60, 157
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 153
BstV1I	GCAGC	2 cut(s)	107, 161
BstV2I	GAAGAC	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	210, 216
CviJI	RGCY	5 cut(s)	65, 98, 123, 161, 174
CviKI_1	RGCY	5 cut(s)	65, 98, 123, 161, 174
CviQI	GTAC	2 cut(s)	210, 216
DdeI	CTNAG	2 cut(s)	60, 157
DrdI	GACNNNNNNGTC	1 cut(s)	112
DseDI	GACNNNNNNGTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	102
FaiI	YATR	3 cut(s)	50, 102, 104
Fnu4HI	GCNGC	2 cut(s)	96, 175
Fsp4HI	GCNGC	2 cut(s)	96, 175
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	2 cut(s)	96, 175
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	164
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	4 cut(s)	8, 75, 147, 177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 153
HpyF3I	CTNAG	2 cut(s)	60, 157
Kpn2I	TCCGGA	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	3 cut(s)	29, 105, 177
Lsp1109I	GCAGC	2 cut(s)	107, 161
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	213
MboII	GAAGA	2 cut(s)	8, 108
MluCI	AATT	2 cut(s)	81, 180
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	3 cut(s)	55, 85, 160
MroI	TCCGGA	1 cut(s)	163
MspI	CCGG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	136, 153
PctI	GAATGC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	97, 176
RsaI	GTAC	2 cut(s)	211, 217
RsaNI	GTAC	2 cut(s)	210, 216
SatI	GCNGC	2 cut(s)	96, 175
ScaI	AGTACT	1 cut(s)	217
SetI	ASST	3 cut(s)	100, 163, 171
SfaNI	GCATC	1 cut(s)	139
SgeI	CNNG	7 cut(s)	56, 103, 120, 124, 132, 156, 176
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	2 cut(s)	81, 180
SspMI	CTAG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	152
TasI	AATT	2 cut(s)	81, 180
TatI	WGTACW	2 cut(s)	209, 215
TfiI	GAWTC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	95, 174
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	210
XapI	RAATTY	2 cut(s)	81, 180
XspI	CTAG	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.