Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004842.1

Orthogroup ID

OG0006762

Physical Location & Seq

Genomic Coordinates Forward (+)

84139 .. 87504

Gene Structure 3366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004842.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgggtgcaatagttcttctccttgtttgtggttcaatcctactgggtatgagtccaactgaggccaaagtttgccctcaaatttgctacgaggcagcttatatgacttgcccgtcttcaggatcgacgcatctttcgccatcttgcaactgttgcttagctccggagcctcaaaactcaaagcaaaacatggctatagacaagagtattagtgcaatagttctactccttgtttgtggttcaatcatactgggagggattccaactgaagccaaagtttgccctctaatttgctatgatgtagctgcttatatgacttgcccgtcttcaggaaacgagcatctttcaccactctgcaactgttgcttagcatcggaaccaggctgcgccctttacctgtccgatggaactcgcctctgtactagtacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prot_inhib_II

Protein Analysis

143

Amino Acids

14.8

Weight (kDa)

4.86

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72060
fragaria_vesca	FvH4_5g32140 FvH4_5g32170 FvH4_5g32180 FvH4_6g07490
prunus_persica	Prupe.1G552600_v2.0.a1 Prupe.1G552700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0228201 RchiOBHm_Chr7g0228221 RchiOBHm_Chr7g0228231 RchiOBHm_Chr7g0228301 RchiOBHm_Chr7g0228331
rosa_laevigata	RLG00000001573
rosa_multiflora	Rmu_sc0004842.1_g000010 Rmu_sc0004842.1_g000019 Rmu_sc0004842.1_g000023
rosa_roxburghii	Rroxscaffold_3G00231260 Rroxscaffold_3G00231290
rosa_rugosa	Rorug07G0247000 Rorug07G0247200
rosa_samantha	Rh7AG401100 Rh7AG401400 Rh7BG382600 Rh7CG419900 Rh7CG420300 Rh7DG397000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	112, 322
AccIII	TCCGGA	1 cut(s)	163
AclWI	GGATC	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	3 cut(s)	102, 288, 312
AfaI	GTAC	2 cut(s)	421, 427
AfiI	CCNNNNNNNGG	2 cut(s)	119, 329
AgsI	TTSAA	2 cut(s)	36, 243
AhlI	ACTAGT	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	3 cut(s)	98, 161, 305
AluI	AGCT	3 cut(s)	98, 161, 305
AlwI	GGATC	1 cut(s)	130
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	3 cut(s)	95, 305, 384
ApoI	RAATTY	1 cut(s)	81
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AspLEI	GCGC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	339
BbsI	GAAGAC	2 cut(s)	108, 318
BbvI	GCAGC	3 cut(s)	107, 292, 371
BccI	CCATC	2 cut(s)	148, 398
BciT130I	CCWGG	1 cut(s)	381
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	3 cut(s)	96, 306, 385
BlpI	GCTNAGC	2 cut(s)	157, 367
BlsI	GCNGC	3 cut(s)	97, 307, 386
BmcAI	AGTACT	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	381
BmiI	GGNNCC	2 cut(s)	168, 378
BmrFI	CCNGG	1 cut(s)	381
BmrI	ACTGGG	2 cut(s)	53, 260
BmsI	GCATC	3 cut(s)	139, 349, 380
BmuI	ACTGGG	2 cut(s)	53, 260
BpiI	GAAGAC	2 cut(s)	108, 318
Bpu1102I	GCTNAGC	2 cut(s)	157, 367
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 329
Bse1I	ACTGG	2 cut(s)	48, 255
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	119, 329
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	48, 255
BseXI	GCAGC	3 cut(s)	107, 292, 371
BshFI	GGCC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	119, 329
BsnI	GGCC	1 cut(s)	65
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	122
Bsp1720I	GCTNAGC	2 cut(s)	157, 367
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	52
BspEI	TCCGGA	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	168, 378
BspPI	GGATC	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	48, 255
BssMI	GATC	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	152, 362
BstAPI	GCANNNNNTGC	2 cut(s)	153, 363
BstDEI	CTNAG	3 cut(s)	60, 157, 367
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 153, 363
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	379
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	107, 292, 371
BstV2I	GAAGAC	2 cut(s)	108, 318
BsuRI	GGCC	1 cut(s)	65
CfoI	GCGC	1 cut(s)	389
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	420, 426
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	8 cut(s)	65, 98, 161, 169, 194, 272, 305, 384
CviKI_1	RGCY	8 cut(s)	65, 98, 161, 169, 194, 272, 305, 384
CviQI	GTAC	2 cut(s)	420, 426
DdeI	CTNAG	3 cut(s)	60, 157, 367
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
DrdI	GACNNNNNNGTC	2 cut(s)	112, 322
DseDI	GACNNNNNNGTC	2 cut(s)	112, 322
Eco57I	CTGAAG	3 cut(s)	102, 288, 312
EcoRII	CCWGG	1 cut(s)	379
FaeI	CATG	1 cut(s)	193
FaiI	YATR	9 cut(s)	50, 102, 104, 191, 197, 248, 297, 312, 314
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	3 cut(s)	96, 306, 385
Fsp4HI	GCNGC	3 cut(s)	96, 306, 385
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	3 cut(s)	96, 306, 385
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HinfI	GANTC	2 cut(s)	52, 259
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	339
Hpy188I	TCNGA	2 cut(s)	376, 403
Hpy188III	TCNNGA	3 cut(s)	120, 164, 330
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	152, 362
HpyCH4V	TGCA	4 cut(s)	8, 147, 215, 357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 153, 363
HpyF3I	CTNAG	3 cut(s)	60, 157, 367
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	387
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	166, 166
LpnPI	CCDG	8 cut(s)	29, 105, 177, 236, 315, 366, 393, 410
Lsp1109I	GCAGC	3 cut(s)	107, 292, 371
LweI	GCATC	3 cut(s)	139, 349, 380
MaeI	CTAG	1 cut(s)	423
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	3 cut(s)	8, 108, 318
MluCI	AATT	2 cut(s)	81, 288
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	80, 287
MnlI	CCTC	7 cut(s)	55, 85, 87, 180, 248, 294, 425
MroI	TCCGGA	1 cut(s)	163
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	136, 153, 363
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	168, 378
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	97, 307, 386
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	168, 378
RsaI	GTAC	2 cut(s)	421, 427
RsaNI	GTAC	2 cut(s)	420, 426
SatI	GCNGC	3 cut(s)	96, 306, 385
Sau3AI	GATC	1 cut(s)	122
ScaI	AGTACT	1 cut(s)	427
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	381
SetI	ASST	4 cut(s)	100, 163, 307, 399
SfaNI	GCATC	3 cut(s)	139, 349, 380
SfcI	CTRYAG	1 cut(s)	195
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	2 cut(s)	81, 288
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	152, 362
TaqI	TCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	81, 288
TatI	WGTACW	2 cut(s)	419, 425
TfiI	GAWTC	1 cut(s)	259
TseI	GCWGC	3 cut(s)	95, 305, 384
XapI	RAATTY	1 cut(s)	81
XspI	CTAG	1 cut(s)	423
ZrmI	AGTACT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.