Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004842.1

Orthogroup ID

OG0006762

Physical Location & Seq

Genomic Coordinates Forward (+)

47292 .. 47799

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004842.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

atgggtgcaatagttcttcttcttgtttgtggttcaatcctactgggtatgagtccaactgaggcctgccctcaaatttgctacgaggcagcttatatgacttgcccgtcttcaggatcgacgcatatttctccatcttgcaactgttgcttagctccggaggttggctgcaaaatttactactccgatggaactctaatctgtactaaatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prot_inhib_II

Protein Analysis

71

Amino Acids

7.37

Weight (kDa)

4.83

Isoelectric Point (pI)

79.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72060
fragaria_vesca	FvH4_5g32140 FvH4_5g32170 FvH4_5g32180 FvH4_6g07490
prunus_persica	Prupe.1G552600_v2.0.a1 Prupe.1G552700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0228201 RchiOBHm_Chr7g0228221 RchiOBHm_Chr7g0228231 RchiOBHm_Chr7g0228301 RchiOBHm_Chr7g0228331
rosa_laevigata	RLG00000001573
rosa_multiflora	Rmu_sc0004842.1_g000010 Rmu_sc0004842.1_g000019 Rmu_sc0004842.1_g000023
rosa_roxburghii	Rroxscaffold_3G00231260 Rroxscaffold_3G00231290
rosa_rugosa	Rorug07G0247000 Rorug07G0247200
rosa_samantha	Rh7AG401100 Rh7AG401400 Rh7BG382600 Rh7CG419900 Rh7CG420300 Rh7DG397000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	106
AccIII	TCCGGA	1 cut(s)	157
AclWI	GGATC	1 cut(s)	124
AcsI	RAATTY	2 cut(s)	75, 174
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	2 cut(s)	113, 164
AgsI	TTSAA	1 cut(s)	36
AluBI	AGCT	2 cut(s)	92, 155
AluI	AGCT	2 cut(s)	92, 155
AlwI	GGATC	1 cut(s)	124
Aor13HI	TCCGGA	1 cut(s)	157
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	89, 168
ApoI	RAATTY	2 cut(s)	75, 174
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	101, 155
BccI	CCATC	2 cut(s)	142, 182
BisI	GCNGC	2 cut(s)	90, 169
BlpI	GCTNAGC	1 cut(s)	151
BlsI	GCNGC	2 cut(s)	91, 170
BmrI	ACTGGG	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 164
Bse1I	ACTGG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	113, 164
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	101, 155
BshFI	GGCC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	113, 164
BsnI	GGCC	1 cut(s)	65
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	116
Bsp1720I	GCTNAGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	52
BspEI	TCCGGA	1 cut(s)	157
BspPI	GGATC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	60, 151
BstKTI	GATC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	101, 155
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	67
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	204
CviJI	RGCY	4 cut(s)	65, 92, 155, 168
CviKI_1	RGCY	4 cut(s)	65, 92, 155, 168
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	2 cut(s)	60, 151
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
DrdI	GACNNNNNNGTC	1 cut(s)	106
DseDI	GACNNNNNNGTC	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	96
FaiI	YATR	4 cut(s)	50, 96, 98, 126
Fnu4HI	GCNGC	2 cut(s)	90, 169
Fsp4HI	GCNGC	2 cut(s)	90, 169
GluI	GCNGC	2 cut(s)	90, 169
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	3 cut(s)	114, 158, 213
Hpy99I	CGWCG	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	8, 141, 171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	2 cut(s)	60, 151
Kpn2I	TCCGGA	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	29, 79, 99, 171
Lsp1109I	GCAGC	2 cut(s)	101, 155
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	3 cut(s)	8, 11, 102
MluCI	AATT	2 cut(s)	75, 174
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	4 cut(s)	55, 79, 81, 154
MroI	TCCGGA	1 cut(s)	157
MspI	CCGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	147
NdeII	GATC	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	91, 170
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SatI	GCNGC	2 cut(s)	90, 169
Sau3AI	GATC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	61
SetI	ASST	3 cut(s)	94, 157, 165
SgeI	CNNG	9 cut(s)	35, 56, 78, 97, 114, 118, 126, 150, 170
Sse9I	AATT	2 cut(s)	75, 174
SseBI	AGGCCT	1 cut(s)	65
StuI	AGGCCT	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	1 cut(s)	119
TasI	AATT	2 cut(s)	75, 174
TatI	WGTACW	1 cut(s)	203
TseI	GCWGC	2 cut(s)	89, 168
XapI	RAATTY	2 cut(s)	75, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.