FvH4_5g32170

Proteinase inhibitor type-2 CEVI57-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006762
Physical Location & Seq
Reverse (-)
23232587 .. 23233305
719 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32170.t1

Sequence Viewer

Length: 246 bp
ATGGCTAGAGACGAGACTCAAGAGAGTATTACTGCAATACTTCTCCTTGTCTGTGGTTCAATCATACTAGGAGTGAATCCAACTGAAGCCTGCCCTCAGTTTTGCTACGGTGCTCGCGATTATATGACCTGCCCGTCTTCAGGAAGCAAGCATCTTTCGCCACCCTGCAACTGTTGCTTAGCTCCGGCACCGGGCTGCGCCCTTTATCAATCTGATGGAACTCTCCTCTGTCTCTGTACTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prot_inhib_II

Protein Analysis

82

Amino Acids

8.48

Weight (kDa)

4.58

Isoelectric Point (pI)

68.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_inhib_II PF02428 30 - 77 1.4e-14 Potato type II proteinase inhibitor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 187
AccII CGCG 1 cut(s) 117
AcuI CTGAAG 2 cut(s) 105, 123
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 2 cut(s) 140, 191
AgsI TTSAA 1 cut(s) 60
AluBI AGCT 2 cut(s) 182, 243
AluI AGCT 2 cut(s) 182, 243
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 3 cut(s) 3, 8, 236
ApeKI GCWGC 1 cut(s) 195
AspLEI GCGC 1 cut(s) 200
AsuC2I CCSGG 1 cut(s) 192
BanI GGYRCC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 209
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 3 cut(s) 3, 8, 236
BfaI CTAG 4 cut(s) 6, 68, 240, 244
BfuAI ACCTGC 1 cut(s) 137
BisI GCNGC 1 cut(s) 196
BlpI GCTNAGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 191
BseLI CCNNNNNNNGG 2 cut(s) 140, 191
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 185, 191
BslI CCNNNNNNNGG 2 cut(s) 140, 191
BsmAI GTCTC 3 cut(s) 3, 8, 236
BsmBI CGTCTC 1 cut(s) 3
Bsp1286I GDGCHC 1 cut(s) 115
Bsp1720I GCTNAGC 1 cut(s) 178
Bsp68I TCGCGA 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 110, 173
BstAPI GCANNNNNTGC 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 91, 115, 149
BstDEI CTNAG 2 cut(s) 96, 178
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 200
BstMAI GTCTC 3 cut(s) 3, 8, 236
BstMWI GCNNNNNNNGC 2 cut(s) 157, 174
BstSCI CCNGG 1 cut(s) 190
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 129
BtuMI TCGCGA 1 cut(s) 117
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 3 cut(s) 91, 115, 149
CfoI GCGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 237
CviJI RGCY 5 cut(s) 5, 89, 182, 195, 243
CviKI_1 RGCY 5 cut(s) 5, 89, 182, 195, 243
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 2 cut(s) 96, 178
DrdI GACNNNNNNGTC 1 cut(s) 133
DseDI GACNNNNNNGTC 1 cut(s) 133
Eco57I CTGAAG 2 cut(s) 105, 123
Esp3I CGTCTC 1 cut(s) 3
FaiI YATR 3 cut(s) 65, 123, 125
Fnu4HI GCNGC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 4 cut(s) 6, 68, 240, 244
GlaI GCGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 196
HapII CCGG 2 cut(s) 185, 191
HhaI GCGC 1 cut(s) 200
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 2 cut(s) 16, 76
HpaII CCGG 2 cut(s) 185, 191
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 3 cut(s) 20, 116, 141
HpyCH4III ACNGT 2 cut(s) 110, 173
HpyCH4V TGCA 2 cut(s) 35, 168
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 174
HpyF3I CTNAG 2 cut(s) 96, 178
HspAI GCGC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 6 cut(s) 103, 126, 142, 178, 198, 204
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 160
MaeI CTAG 4 cut(s) 6, 68, 240, 244
MboII GAAGA 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 115
MlyI GAGTC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 2 cut(s) 105, 236
MspI CCGG 2 cut(s) 185, 191
MspR9I CCNGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 157, 174
NciI CCSGG 1 cut(s) 192
NlaIV GGNNCC 1 cut(s) 189
NruI TCGCGA 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 189
RruI TCGCGA 1 cut(s) 117
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SatI GCNGC 1 cut(s) 196
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 115
SetI ASST 3 cut(s) 131, 184, 245
SfaNI GCATC 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
SspMI CTAG 4 cut(s) 6, 68, 240, 244
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 110, 173
TatI WGTACW 1 cut(s) 236
TfiI GAWTC 1 cut(s) 76
TseI GCWGC 1 cut(s) 195
XspI CTAG 4 cut(s) 6, 68, 240, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.