AT1G72440

CCAAT enhancer-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008077
Physical Location & Seq
Reverse (-)
27268092 .. 27273935
5844 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72440.1

Sequence Viewer

Length: 3132 bp
ATGTCAAAGATAAAGCCTTTGAGTAAATCATCGCAGGACTTGAGTCTTCTCACATCTGATATCGCATCATTCGCTTCTTCTATTGGCTTAGCTTCTGCTCTTCCTTCTTCGGGTTTCAACGACACTGATTTCCGAAAACCAGCTAAATCCAAAACCCAGAAACGGAAAAAGCCTAAGAAGGATCAGCAACACAAGGATGAAGATGAAGAAGGAGAGCCAAAATCGAACATTGGGAATGAAAAGGGAAAAGATTTTGGAGCGAGGAAGCAAAACAAAGATGCACCGGTGAAGCAAACGTTACAACCGAAGCCAAAGCCTGGATTCTTATCGATTGATGATGAGAGTACTGGGTACAAGAAAAAACGTTTCGATGAATTCAAGAGTTTGCCTAAGTTACCATTGGTGAAAGCGAGTTTATTGAGCTCTGAATGGTACAACGATGCAGCTGAGTTTGAGGAGAAGGTGTTTGGTGGCCGGAAAGTGGCGGTGGCGAATAAGGAGGATTTTAAGGGTGTGGTGGAGAAGAAGAGAGAATTAGGAGAGAGATTGATGTGGCAATACGCAGAGGACTTTGCAACTTCGAAAGGAAAAGGTGGAGATATGAAGATGGTGATTTCTGCTCAAAAGTCTGGGACAGTTGCTGATAAAATCACTGCCTTTGAGATTATGGTTGGAGAGAATCCCATTGCAAATATGAGATCTCTTGATGCCTTATTGGGAATGGTGACCTCAAAGGTTGGAAAAAGATTTGCATTTAAGGGTCTTAAGGCTCTATCAGAAATTTTGATCAGGTTATTACCTGATCGCAAGCTGAAGTCACTTTTACAGCGACCTTTAAACATCATTCCGGAAAATAAGGATGGTTACTCGCTTTTGCTGTTTTGGTACTGGGAGGATTGCTTGAAACAGAGGTATGAGCGCTTCGTCACAGCCCTTGATGAATCATCTAAAGATATGCTTCCAGAGCTGAAGGACAAGGCTTTAAAGACAATATATTTCATGTTGACAAGCAAATCAGAACAAGAGCGGAAATTGCTAGTGTCATTGGTGAACAAGTTGGGGGATCCTCAAAACAAGAGTGCATCTAATGCTGATTATCATCTGACAAATCTTTTGGCTGATCATCCTAACATGAAGGCTGTGGTTATAGATGAAGTTGACTCCTTTCTCTTCCGACCCCATCTTGGGTTACGAGCAAAGTATCATGCTGTTAACTTTTTGAGTCAGATCCGATTGAGCCACAAAGGAGAGGATCCAAAGGTGGCAAAACGTCTAATTGATGTATATTTTGCCCTGTTTAAGGTTTTAACTACAGAAGCAAATAGGAAACAAGGTGCAGATGACAAAGGAGCCGCTGATAAGAAAAAATCCAACCCAAAGGACACAAAGCAAGAAGTGTCAACTGATTCACCTATTGAGTTGGATTCAAGAATTCTATCAGCTCTACTGACGGGAGTTAACAGAGCTTTTCCATATGTTTCCACTGACGAGGCTGATGATATAATTGAATCCCAGACGCCAGTGCTTTTCAAACTGGTACATTCGGCGAATTTCAATGTAGGAGTCCAATCACTGATGCTTCTTGACAAGATCTCATCCAAGAATAAGATTGTTAGTGACAGGTTTTACCGTGCATTGTACTCGAAACTTCTACTCCCCTCCGCAATGAATTCTTCCAAGGCTGAAATGTTTATTGGGCTTCTTCTCAGAGCCATGAAAAATGATATAAATATCAAGCGTGTGGCTGCCTTCTCCAAAAGAGTCTTGCAGGTTGCGCTTCAACAGCCACCACAGTATGCCTGTGGATGCCTTTTCCTATTATCTGAAGTCTTAAAATCAAGGCCACCTCTATGGAAGATGGTGGTCCAGAGGGAATCAGTTGAGGAAGAAGAAGATATAGAACATTTTGAGGATGTGATAGAGGGAGATGATGTTGATCCCAATAAGAAAGCAGAGAATGACGAGAATGTTGTTGAAGTTGATCATGATGGTGTCGAAAAGTCAAGTAGAGATGGTGATTCTTCTTCAGATGACGAAGAGGCTTTGGCAATCAGGCTATCTGATGAAGAAGATGATAATGCTTCTGATGATTCTGAAGAGCTAATTAGAAACGAAACTCCCCAGCTTGAAGAAGTCATGGAGGTTTCTAATGATATGGAAAAAAGAAGCCAACCGCCAATGAGACCGAGTTCTCTTCCTGGAGGATATGATCCTCGTCATAGAGAACCTTCTTACTGTAACGCAGACCGTGCAAGTTGGTGGGAATTGGGGGTTCTTTCAAAACATGCTCACCCCTCGGTTGCTACAATGGCTGGAACCCTTCTCTCAGGAACAAATATTGTTTACAACGGAAACCCGCTGAACGATTTATCTCTAACTGCTTTCTTGGATAAATTCATGGAGAAGAAACCAAAGCAAAACACTTGGCATGGTGGTTCCCAGATTGAACCTTCCAAGAAGCTTGACATGTCAAACCGTGTGATTGGAGCTGAAATTCTCTCATTAGCAGAAGGAGATGTGGCTCCTGAAGATCTAGTCTTCCACAAGTTCTATGTGAACAAGATGACCAGTACGAAGCAGTCAAAGAAAAAGAAGAAGAAGAAGCTACCTGAAGAAGAAGCTGCTGAAGAACTTTACGATGTGAATGATGGAGATGGTGGAGAAAACTACGATAGTGATGTTGAATTCGAGGCTGGTGATGAGAGTGACAATGAGGAGATTGAGAATATGCTGGATGATGTTGATGATAATGCTGTGGAAGAAGAGGGCGGTGAATATGACTATGATGATCTAGATGGAGTAGCCGGCGAGGATGATGAAGAGCTCGTGGCTGATGTGAGCGATGCAGAGATGGACACAGACATGGACATGGACCTGATTGATGATGAAGATGATAACAACGTTGATGATGATGGTACTGGTGATGGTGGTGATGATGATAGTGATGGTGATGATGGTCGTAGTAAGAAGAAAAAGAAAGAGAAAAGAAAACGGAAATCTCCATTTGCGAGTCTTGAAGAGTACAAGCATTTGATAGACCAAGACGAGAAAGAGGATTCGAAGACTAAAAGAAAAGCAACATCAGAGCCCACAAAGAAGAAGAAAAAGAAGAAGTCTAAAGCATCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBF

Protein Analysis

1043

Amino Acids

117.02

Weight (kDa)

5.09

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBF PF03914 522 - 771 1.9e-44 CBF/Mak21 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1759
AccB7I CCANNNNNTGG 1 cut(s) 317
AccBSI CCGCTC 1 cut(s) 1027
AccIII TCCGGA 1 cut(s) 847
AciI CCGC 7 cut(s) 485, 1027, 1353, 1662, 2174, 2357, 2769
AclI AACGTT 3 cut(s) 296, 364, 2901
AclWI GGATC 8 cut(s) 189, 1058, 1071, 1222, 1247, 1260, 1931, 2204
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 8 cut(s) 374, 780, 1431, 1549, 1669, 2393, 2493, 2684
AcuI CTGAAG 8 cut(s) 833, 989, 1845, 2010, 2115, 2547, 2631, 2646
AcyI GRCGYC 1 cut(s) 1517
AfaI GTAC 9 cut(s) 346, 353, 434, 887, 1539, 1640, 2572, 2917, 3023
AfeI AGCGCT 1 cut(s) 920
AfiI CCNNNNNNNGG 7 cut(s) 110, 162, 317, 481, 1184, 1185, 1300
AflII CTTAAG 1 cut(s) 764
AflIII ACRYGT 1 cut(s) 2466
AgeI ACCGGT 1 cut(s) 283
AjnI CCWGG 2 cut(s) 316, 2197
AjuI GAANNNNNNNTTGG 2 cut(s) 1677, 1709
Alw21I GWGCWC 2 cut(s) 425, 2826
Alw26I GTCTC 1 cut(s) 2176
AlwI GGATC 8 cut(s) 189, 1058, 1071, 1222, 1247, 1260, 1931, 2204
AlwNI CAGNNNCTG 1 cut(s) 641
Aor13HI TCCGGA 1 cut(s) 847
Aor51HI AGCGCT 1 cut(s) 920
AoxI GGCC 2 cut(s) 472, 1841
ApeKI GCWGC 3 cut(s) 443, 1745, 2621
ApoI RAATTY 8 cut(s) 374, 780, 1431, 1549, 1669, 2393, 2493, 2684
ArsI GACNNNNNNTTYG 2 cut(s) 1096, 1128
AsiGI ACCGGT 1 cut(s) 283
AspLEI GCGC 2 cut(s) 921, 1777
AspS9I GGNCC 2 cut(s) 1864, 2872
AsuII TTCGAA 2 cut(s) 581, 3059
AvaII GGWCC 2 cut(s) 1864, 2872
BamHI GGATCC 2 cut(s) 1063, 1252
BanII GRGCYC 3 cut(s) 425, 2826, 3090
BarI GAAGNNNNNNTAC 2 cut(s) 905, 937
BauI CACGAG 1 cut(s) 2825
BbsI GAAGAC 3 cut(s) 38, 2530, 3068
Bbv12I GWGCWC 2 cut(s) 425, 2826
BbvI GCAGC 3 cut(s) 455, 1732, 2608
BcgI CGANNNNNNTGC 2 cut(s) 1623, 1657
BciT130I CCWGG 2 cut(s) 318, 2199
BclI TGATCA 3 cut(s) 786, 1120, 1981
BcoDI GTCTC 1 cut(s) 2176
BfaI CTAG 3 cut(s) 1037, 2534, 2792
BfmI CTRYAG 1 cut(s) 1311
BfoI RGCGCY 1 cut(s) 922
BfrI CTTAAG 1 cut(s) 764
BfuAI ACCTGC 1 cut(s) 1759
BglII AGATCT 3 cut(s) 698, 1590, 2530
BisI GCNGC 4 cut(s) 444, 1353, 1746, 2622
BlpI GCTNAGC 1 cut(s) 88
BlsI GCNGC 4 cut(s) 445, 1354, 1747, 2623
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 2 cut(s) 318, 2199
Bme18I GGWCC 2 cut(s) 1864, 2872
BmgT120I GGNCC 2 cut(s) 1864, 2872
BmiI GGNNCC 6 cut(s) 1065, 1254, 1351, 2317, 2437, 2523
BmrFI CCNGG 2 cut(s) 318, 2199
BmrI ACTGGG 2 cut(s) 357, 898
BmsI GCATC 8 cut(s) 74, 268, 430, 697, 1091, 1566, 1796, 2833
BmuI ACTGGG 2 cut(s) 357, 898
BoxI GACNNNNGTC 1 cut(s) 42
BpiI GAAGAC 3 cut(s) 38, 2530, 3068
BpmI CTGGAG 1 cut(s) 2220
Bpu1102I GCTNAGC 1 cut(s) 88
Bpu14I TTCGAA 2 cut(s) 581, 3059
BpuEI CTTGAG 1 cut(s) 61
Bsa29I ATCGAT 1 cut(s) 329
BsaBI GATNNNNATC 3 cut(s) 325, 1098, 1935
BsaHI GRCGYC 1 cut(s) 1517
BsaI GGTCTC 1 cut(s) 2176
BsaJI CCNNGG 2 cut(s) 1677, 2295
BsaWI WCCGGW 2 cut(s) 283, 847
BsaXI ACNNNNNCTCC 6 cut(s) 449, 479, 1638, 1668, 1917, 1947
Bsc4I CCNNNNNNNGG 7 cut(s) 110, 162, 317, 481, 1184, 1185, 1300
Bse118I RCCGGY 2 cut(s) 283, 2804
Bse1I ACTGG 6 cut(s) 352, 893, 1520, 1539, 2568, 2923
Bse3DI GCAATG 2 cut(s) 684, 1671
Bse8I GATNNNNATC 3 cut(s) 325, 1098, 1935
BseAI TCCGGA 1 cut(s) 847
BseBI CCWGG 2 cut(s) 318, 2199
BseCI ATCGAT 1 cut(s) 329
BseDI CCNNGG 2 cut(s) 1677, 2295
BseGI GGATG 8 cut(s) 202, 865, 1123, 1595, 1811, 1918, 2740, 2818
BseJI GATNNNNATC 3 cut(s) 325, 1098, 1935
BseLI CCNNNNNNNGG 7 cut(s) 110, 162, 317, 481, 1184, 1185, 1300
BseMI GCAATG 2 cut(s) 684, 1671
BseMII CTCAG 3 cut(s) 438, 1720, 2340
BseNI ACTGG 6 cut(s) 352, 893, 1520, 1539, 2568, 2923
BseRI GAGGAG 2 cut(s) 470, 2729
BseXI GCAGC 3 cut(s) 455, 1732, 2608
BseYI CCCAGC 1 cut(s) 2121
BsgI GTGCAG 1 cut(s) 1356
BshFI GGCC 2 cut(s) 474, 1843
BshTI ACCGGT 1 cut(s) 283
BshVI ATCGAT 1 cut(s) 329
BsiHKAI GWGCWC 2 cut(s) 425, 2826
BsiSI CCGG 4 cut(s) 284, 475, 848, 2805
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 7 cut(s) 110, 162, 317, 481, 1184, 1185, 1300
BsmAI GTCTC 1 cut(s) 2176
BsmFI GGGAC 1 cut(s) 646
BsnI GGCC 2 cut(s) 474, 1843
Bso31I GGTCTC 1 cut(s) 2176
Bsp119I TTCGAA 2 cut(s) 581, 3059
Bsp1286I GDGCHC 3 cut(s) 425, 2826, 3090
Bsp13I TCCGGA 1 cut(s) 847
Bsp1720I GCTNAGC 1 cut(s) 88
BspACI CCGC 7 cut(s) 485, 1027, 1353, 1662, 2174, 2357, 2769
BspANI GGCC 2 cut(s) 474, 1843
BspCNI CTCAG 3 cut(s) 439, 1719, 2339
BspDI ATCGAT 1 cut(s) 329
BspEI TCCGGA 1 cut(s) 847
BspHI TCATGA 1 cut(s) 1984
BspLI GGNNCC 6 cut(s) 1065, 1254, 1351, 2317, 2437, 2523
BspMI ACCTGC 1 cut(s) 1759
BspPI GGATC 8 cut(s) 189, 1058, 1071, 1222, 1247, 1260, 1931, 2204
BspQI GCTCTTC 3 cut(s) 105, 2091, 2814
BspT104I TTCGAA 2 cut(s) 581, 3059
BspTI CTTAAG 1 cut(s) 764
BspTNI GGTCTC 1 cut(s) 2176
BsrBI CCGCTC 1 cut(s) 1027
BsrDI GCAATG 2 cut(s) 684, 1671
BsrFI RCCGGY 2 cut(s) 283, 2804
BsrI ACTGG 6 cut(s) 352, 893, 1520, 1539, 2568, 2923
BssAI RCCGGY 2 cut(s) 283, 2804
BssECI CCNNGG 2 cut(s) 1677, 2295
BssNI GRCGYC 1 cut(s) 1517
BssSI CACGAG 1 cut(s) 2825
BssT1I CCWWGG 1 cut(s) 1677
Bst2BI CACGAG 1 cut(s) 2825
Bst2UI CCWGG 2 cut(s) 318, 2199
Bst4CI ACNGT 6 cut(s) 637, 1631, 1794, 2237, 2249, 2477
Bst6I CTCTTC 9 cut(s) 105, 521, 1175, 2031, 2091, 2199, 2757, 2814, 3012
BstACI GRCGYC 1 cut(s) 1517
BstAFI CTTAAG 1 cut(s) 764
BstAPI GCANNNNNTGC 2 cut(s) 1088, 2249
BstBI TTCGAA 2 cut(s) 581, 3059
BstC8I GCNNGC 2 cut(s) 809, 2806
BstDEI CTNAG 6 cut(s) 88, 174, 390, 447, 1706, 2326
BstEII GGTNACC 1 cut(s) 724
BstENI CCTNNNNNAGG 1 cut(s) 1298
BstF5I GGATG 8 cut(s) 202, 865, 1123, 1595, 1811, 1918, 2740, 2818
BstH2I RGCGCY 1 cut(s) 922
BstHHI GCGC 2 cut(s) 921, 1777
BstMAI GTCTC 1 cut(s) 2176
BstMWI GCNNNNNNNGC 8 cut(s) 71, 964, 1033, 1088, 1774, 1783, 2249, 2309
BstNI CCWGG 2 cut(s) 318, 2199
BstNSI RCATGY 2 cut(s) 2288, 2470
BstPAI GACNNNNGTC 1 cut(s) 42
BstPI GGTNACC 1 cut(s) 724
BstSCI CCNGG 2 cut(s) 316, 2197
BstSFI CTRYAG 1 cut(s) 1311
BstV1I GCAGC 3 cut(s) 455, 1732, 2608
BstV2I GAAGAC 3 cut(s) 38, 2530, 3068
BstX2I RGATCY 6 cut(s) 698, 1063, 1227, 1252, 1590, 2530
BstXI CCANNNNNNTGG 1 cut(s) 1851
BstYI RGATCY 6 cut(s) 698, 1063, 1227, 1252, 1590, 2530
Bsu15I ATCGAT 1 cut(s) 329
BsuRI GGCC 2 cut(s) 474, 1843
BsuTUI ATCGAT 1 cut(s) 329
BtgZI GCGATG 2 cut(s) 15, 2856
BtsCI GGATG 8 cut(s) 202, 865, 1123, 1595, 1811, 1918, 2740, 2818
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 5 cut(s) 123, 651, 1482, 1527, 1571
BveI ACCTGC 1 cut(s) 1759
Cac8I GCNNGC 2 cut(s) 809, 2806
CaiI CAGNNNCTG 1 cut(s) 641
CciI TCATGA 1 cut(s) 1984
CfoI GCGC 2 cut(s) 921, 1777
Cfr10I RCCGGY 2 cut(s) 283, 2804
Cfr13I GGNCC 2 cut(s) 1864, 2872
ClaI ATCGAT 1 cut(s) 329
CseI GACGC 1 cut(s) 1525
Csp6I GTAC 9 cut(s) 345, 352, 433, 886, 1538, 1639, 2571, 2916, 3022
CspAI ACCGGT 1 cut(s) 283
CviQI GTAC 9 cut(s) 345, 352, 433, 886, 1538, 1639, 2571, 2916, 3022
DdeI CTNAG 6 cut(s) 88, 174, 390, 447, 1706, 2326
DraI TTTAAA 2 cut(s) 837, 984
EaeI YGGCCR 1 cut(s) 472
Eam1104I CTCTTC 9 cut(s) 105, 521, 1175, 2031, 2091, 2199, 2757, 2814, 3012
EarI CTCTTC 9 cut(s) 105, 521, 1175, 2031, 2091, 2199, 2757, 2814, 3012
Ecl136II GAGCTC 2 cut(s) 423, 2824
Eco130I CCWWGG 1 cut(s) 1677
Eco24I GRGCYC 3 cut(s) 425, 2826, 3090
Eco31I GGTCTC 1 cut(s) 2176
Eco32I GATATC 1 cut(s) 61
Eco47I GGWCC 2 cut(s) 1864, 2872
Eco47III AGCGCT 1 cut(s) 920
Eco53kI GAGCTC 2 cut(s) 423, 2824
Eco57I CTGAAG 8 cut(s) 833, 989, 1845, 2010, 2115, 2547, 2631, 2646
Eco91I GGTNACC 1 cut(s) 724
EcoICRI GAGCTC 2 cut(s) 423, 2824
EcoNI CCTNNNNNAGG 1 cut(s) 1298
EcoO65I GGTNACC 1 cut(s) 724
EcoRI GAATTC 4 cut(s) 374, 1431, 1669, 2684
EcoRII CCWGG 2 cut(s) 316, 2197
EcoRV GATATC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 1677
EcoT38I GRGCYC 3 cut(s) 425, 2826, 3090
ErhI CCWWGG 1 cut(s) 1677
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 1 cut(s) 646
FauI CCCGC 1 cut(s) 2364
FauNDI CATATG 1 cut(s) 1474
FbaI TGATCA 3 cut(s) 786, 1120, 1981
Fnu4HI GCNGC 4 cut(s) 444, 1353, 1746, 2622
FokI GGATG 8 cut(s) 209, 872, 1110, 1582, 1818, 1925, 2747, 2825
FriOI GRGCYC 3 cut(s) 425, 2826, 3090
Fsp4HI GCNGC 4 cut(s) 444, 1353, 1746, 2622
FspBI CTAG 3 cut(s) 1037, 2534, 2792
GlaI GCGC 2 cut(s) 920, 1776
GluI GCNGC 4 cut(s) 444, 1353, 1746, 2622
GsaI CCCAGC 1 cut(s) 2125
GsuI CTGGAG 1 cut(s) 2220
HaeII RGCGCY 1 cut(s) 922
HaeIII GGCC 2 cut(s) 474, 1843
HapII CCGG 4 cut(s) 284, 475, 848, 2805
HgaI GACGC 1 cut(s) 1525
HhaI GCGC 2 cut(s) 921, 1777
Hin1I GRCGYC 1 cut(s) 1517
Hin6I GCGC 2 cut(s) 919, 1775
HinP1I GCGC 2 cut(s) 919, 1775
HincII GTYRAC 5 cut(s) 1005, 1159, 1213, 1401, 1459
HindII GTYRAC 5 cut(s) 1005, 1159, 1213, 1401, 1459
HindIII AAGCTT 1 cut(s) 2459
HpaI GTTAAC 2 cut(s) 1213, 1459
HpaII CCGG 4 cut(s) 284, 475, 848, 2805
Hpy166II GTNNAC 8 cut(s) 1005, 1051, 1159, 1213, 1401, 1459, 2344, 2557
Hpy8I GTNNAC 8 cut(s) 1005, 1051, 1159, 1213, 1401, 1459, 2344, 2557
HpyCH4III ACNGT 6 cut(s) 637, 1631, 1794, 2237, 2249, 2477
HpyCH4IV ACGT 4 cut(s) 296, 364, 1270, 2901
HpyF10VI GCNNNNNNNGC 8 cut(s) 71, 964, 1033, 1088, 1774, 1783, 2249, 2309
HpyF3I CTNAG 6 cut(s) 88, 174, 390, 447, 1706, 2326
HpySE526I ACGT 4 cut(s) 296, 364, 1270, 2901
Hsp92I GRCGYC 1 cut(s) 1517
HspAI GCGC 2 cut(s) 919, 1775
Kpn2I TCCGGA 1 cut(s) 847
KroI GCCGGC 1 cut(s) 2804
KroNI GCCGGC 1 cut(s) 2806
Ksp22I TGATCA 3 cut(s) 786, 1120, 1981
KspAI GTTAAC 2 cut(s) 1213, 1459
LguI GCTCTTC 3 cut(s) 105, 2091, 2814
LmnI GCTCC 4 cut(s) 257, 1349, 2486, 2527
Lsp1109I GCAGC 3 cut(s) 455, 1732, 2608
LweI GCATC 8 cut(s) 74, 268, 430, 697, 1091, 1566, 1796, 2833
MaeI CTAG 3 cut(s) 1037, 2534, 2792
MaeII ACGT 4 cut(s) 296, 364, 1270, 2901
MbiI CCGCTC 1 cut(s) 1027
MflI RGATCY 6 cut(s) 698, 1063, 1227, 1252, 1590, 2530
MhlI GDGCHC 3 cut(s) 425, 2826, 3090
MlyI GAGTC 6 cut(s) 52, 1154, 1231, 1572, 1770, 3019
MmeI TCCRAC 5 cut(s) 652, 718, 1198, 1395, 1401
MroI TCCGGA 1 cut(s) 847
MroNI GCCGGC 1 cut(s) 2804
MslI CAYNNNNRTG 5 cut(s) 195, 1849, 1989, 2861, 2867
MspA1I CMGCKG 3 cut(s) 446, 1355, 2359
MspCI CTTAAG 1 cut(s) 764
MspI CCGG 4 cut(s) 284, 475, 848, 2805
MspR9I CCNGG 2 cut(s) 318, 2199
MvaI CCWGG 2 cut(s) 318, 2199
MwoI GCNNNNNNNGC 8 cut(s) 71, 964, 1033, 1088, 1774, 1783, 2249, 2309
NaeI GCCGGC 1 cut(s) 2806
NdeI CATATG 1 cut(s) 1474
NgoMIV GCCGGC 1 cut(s) 2804
NlaIV GGNNCC 6 cut(s) 1065, 1254, 1351, 2317, 2437, 2523
NmuCI GTSAC 5 cut(s) 724, 816, 925, 1616, 2705
NspI RCATGY 2 cut(s) 2288, 2470
NspV TTCGAA 2 cut(s) 581, 3059
PagI TCATGA 1 cut(s) 1984
PciI ACATGT 1 cut(s) 2466
PciSI GCTCTTC 3 cut(s) 105, 2091, 2814
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PdiI GCCGGC 1 cut(s) 2806
PflMI CCANNNNNTGG 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 2197
PinAI ACCGGT 1 cut(s) 283
PkrI GCNGC 4 cut(s) 445, 1354, 1747, 2623
PleI GAGTC 6 cut(s) 51, 1154, 1230, 1571, 1769, 3018
PpsI GAGTC 6 cut(s) 51, 1154, 1230, 1571, 1769, 3018
PscI ACATGT 1 cut(s) 2466
PshAI GACNNNNGTC 1 cut(s) 42
Psp124BI GAGCTC 2 cut(s) 425, 2826
Psp1406I AACGTT 3 cut(s) 296, 364, 2901
Psp6I CCWGG 2 cut(s) 316, 2197
PspEI GGTNACC 1 cut(s) 724
PspFI CCCAGC 1 cut(s) 2121
PspGI CCWGG 2 cut(s) 316, 2197
PspN4I GGNNCC 6 cut(s) 1065, 1254, 1351, 2317, 2437, 2523
PspPI GGNCC 2 cut(s) 1864, 2872
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 6 cut(s) 698, 1063, 1227, 1252, 1590, 2530
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 9 cut(s) 346, 353, 434, 887, 1539, 1640, 2572, 2917, 3023
RsaNI GTAC 9 cut(s) 345, 352, 433, 886, 1538, 1639, 2571, 2916, 3022
RseI CAYNNNNRTG 5 cut(s) 195, 1849, 1989, 2861, 2867
SacI GAGCTC 2 cut(s) 425, 2826
SapI GCTCTTC 3 cut(s) 105, 2091, 2814
SatI GCNGC 4 cut(s) 444, 1353, 1746, 2622
Sau96I GGNCC 2 cut(s) 1864, 2872
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 6 cut(s) 52, 1154, 1231, 1572, 1770, 3019
ScrFI CCNGG 2 cut(s) 318, 2199
SduI GDGCHC 3 cut(s) 425, 2826, 3090
SfaNI GCATC 8 cut(s) 74, 268, 430, 697, 1091, 1566, 1796, 2833
SfcI CTRYAG 1 cut(s) 1311
SfuI TTCGAA 2 cut(s) 581, 3059
SgrAI CRCCGGYG 1 cut(s) 283
SinI GGWCC 2 cut(s) 1864, 2872
SmiMI CAYNNNNRTG 5 cut(s) 195, 1849, 1989, 2861, 2867
SmlI CTYRAG 2 cut(s) 40, 764
SmoI CTYRAG 2 cut(s) 40, 764
SsiI CCGC 7 cut(s) 485, 1027, 1353, 1662, 2174, 2357, 2769
SspI AATATT 1 cut(s) 2338
SspMI CTAG 3 cut(s) 1037, 2534, 2792
SstI GAGCTC 2 cut(s) 425, 2826
StyD4I CCNGG 2 cut(s) 316, 2197
StyI CCWWGG 1 cut(s) 1677
TaaI ACNGT 6 cut(s) 637, 1631, 1794, 2237, 2249, 2477
TaiI ACGT 4 cut(s) 299, 367, 1273, 2904
TaqI TCGA 8 cut(s) 224, 329, 369, 581, 1643, 1995, 2688, 3059
TaqII GACCGA 1 cut(s) 2200
TatI WGTACW 3 cut(s) 344, 1638, 3021
TauI GCSGC 1 cut(s) 1355
TscAI CASTG 5 cut(s) 130, 658, 1489, 1527, 1578
TseFI GTSAC 5 cut(s) 724, 816, 925, 1616, 2705
TseI GCWGC 3 cut(s) 443, 1745, 2621
Tsp45I GTSAC 5 cut(s) 724, 816, 925, 1616, 2705
TspGWI ACGGA 3 cut(s) 178, 2364, 3007
TspRI CASTG 5 cut(s) 130, 658, 1489, 1527, 1578
Van91I CCANNNNNTGG 1 cut(s) 317
Vha464I CTTAAG 1 cut(s) 764
VpaK11BI GGWCC 2 cut(s) 1864, 2872
XagI CCTNNNNNAGG 1 cut(s) 1298
XapI RAATTY 8 cut(s) 374, 780, 1431, 1549, 1669, 2393, 2493, 2684
XbaI TCTAGA 1 cut(s) 2791
XceI RCATGY 2 cut(s) 2288, 2470
XspI CTAG 3 cut(s) 1037, 2534, 2792
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.