Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8429717.1

Orthogroup ID

OG0008077

Physical Location & Seq

Genomic Coordinates Forward (+)

806 .. 1484

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8429717.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 679 bp

atggcggacagaaagaaatctaagaaacccacaaacaacaacatcgagcacctcaagactgacatagcctccttcgcttcctccctcggcctctctacctccctccctccctctgattcttcaggcttcaacgatgtcgatttccgcaaccccaaaaaaccccaacagaggcctaaaccctcaaaaccccagaattccaaaccccaaaatcgaaacacccagaacttcaaacccaatgaaaggcccaatctttcgaaacccccttttccttcagtccctgatgtcaccagcaacagtgaaaaagcaaagacctttgagaatcttccgaagctgccgttgatttcagccaccaacattggagtgtggtacgaagaagctgaagaattggaaggcaaagtggtcgggaagatgaagaaagccgaggcaaggagtgacaaggagtggagtggtgaggtggccaagaagcgaaagcttggagagaggttgatggcacagtacacggcggattacgaggcttcgaaagggaagagtggggatatcaagctgttgctgaccacacagaggtcagggactgcttctgataagatttcggcgttttcggtgttggttggggatgatcccattgccaatttgaggtctttggatgcacttttaggtaatcttttgtttgctgatatgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBF

Protein Analysis

226

Amino Acids

24.87

Weight (kDa)

9.56

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72440
fragaria_vesca	FvH4_6g35460 FvH4_6g35460
malus_domestica	MD09G1175700.v1.1 MD17G1151100.v1.1
prunus_persica	Prupe.3G034700_v2.0.a1 Prupe.3G034700_v2.0.a1 Prupe.3G034700_v2.0.a1
pyrus_communis	pycom09g09340 pycom09g09350 pycom17g14440
rosa_chinensis	RchiOBHm_Chr2g0147011
rosa_laevigata	RLG00000020238
rosa_multiflora	Rmu_co8429717.1_g000001 Rmu_sc0001880.1_g000035
rosa_roxburghii	Rroxscaffold_2G00099760
rosa_rugosa	Rorug02G0398000
rosa_samantha	Rh2AG455000 Rh2BG467300 Rh2CG442400 Rh2DG476500 Rh7BG367700
rosa_wichuraiana	Rw2G037120 Rw2G037220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 145, 503
AclWI	GGATC	1 cut(s)	611
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	1 cut(s)	193
AcuI	CTGAAG	3 cut(s)	105, 255, 399
AfaI	GTAC	2 cut(s)	368, 497
AfiI	CCNNNNNNNGG	5 cut(s)	168, 240, 426, 561, 633
AgsI	TTSAA	2 cut(s)	130, 229
AluBI	AGCT	4 cut(s)	331, 377, 472, 544
AluI	AGCT	4 cut(s)	331, 377, 472, 544
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	611
AlwNI	CAGNNNCTG	2 cut(s)	278, 572
AoxI	GGCC	4 cut(s)	88, 170, 242, 456
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	277, 461
AsuII	TTCGAA	2 cut(s)	254, 518
BalI	TGGCCA	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	481
BceAI	ACGGC	2 cut(s)	319, 516
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	243
BmsI	GCATC	1 cut(s)	634
Bpu14I	TTCGAA	2 cut(s)	254, 518
BpuEI	CTTGAG	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	85, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	5 cut(s)	168, 240, 426, 561, 633
Bse3DI	GCAATG	1 cut(s)	621
BseDI	CCNNGG	2 cut(s)	85, 420
BseGI	GGATG	2 cut(s)	619, 649
BseLI	CCNNNNNNNGG	5 cut(s)	168, 240, 426, 561, 633
BseMI	GCAATG	1 cut(s)	621
BseXI	GCAGC	1 cut(s)	318
BshFI	GGCC	4 cut(s)	90, 172, 244, 458
BsiHKAI	GWGCWC	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	260, 583
BslI	CCNNNNNNNGG	5 cut(s)	168, 240, 426, 561, 633
BsmFI	GGGAC	2 cut(s)	260, 583
BsnI	GGCC	4 cut(s)	90, 172, 244, 458
Bsp119I	TTCGAA	2 cut(s)	254, 518
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	616
BspACI	CCGC	3 cut(s)	5, 145, 503
BspANI	GGCC	4 cut(s)	90, 172, 244, 458
BspPI	GGATC	1 cut(s)	611
BspT104I	TTCGAA	2 cut(s)	254, 518
BsrDI	GCAATG	1 cut(s)	621
BssECI	CCNNGG	2 cut(s)	85, 420
BssMI	GATC	1 cut(s)	616
Bst4CI	ACNGT	2 cut(s)	296, 495
Bst6I	CTCTTC	1 cut(s)	521
BstBI	TTCGAA	2 cut(s)	254, 518
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	619, 649
BstKTI	GATC	1 cut(s)	619
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	318
BsuRI	GGCC	4 cut(s)	90, 172, 244, 458
BtsCI	GGATG	2 cut(s)	619, 649
BtsIMutI	CAGTG	1 cut(s)	301
CaiI	CAGNNNCTG	2 cut(s)	278, 572
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	367, 496
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviQI	GTAC	2 cut(s)	367, 496
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
EciI	GGCGGA	2 cut(s)	20, 518
Eco147I	AGGCCT	1 cut(s)	172
Eco32I	GATATC	1 cut(s)	538
Eco57I	CTGAAG	3 cut(s)	105, 255, 399
EcoRI	GAATTC	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	538
FaiI	YATR	2 cut(s)	65, 677
FaqI	GGGAC	2 cut(s)	260, 583
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	2 cut(s)	626, 656
Fsp4HI	GCNGC	1 cut(s)	332
GluI	GCNGC	1 cut(s)	332
HaeIII	GGCC	4 cut(s)	90, 172, 244, 458
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	2 cut(s)	116, 319
HphI	GGTGA	2 cut(s)	277, 461
Hpy166II	GTNNAC	1 cut(s)	498
Hpy188I	TCNGA	3 cut(s)	115, 327, 580
Hpy188III	TCNNGA	2 cut(s)	55, 403
Hpy8I	GTNNAC	1 cut(s)	498
HpyAV	CCTTC	3 cut(s)	82, 279, 383
HpyCH4III	ACNGT	2 cut(s)	296, 495
HpyCH4V	TGCA	1 cut(s)	647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	616
LpnPI	CCDG	6 cut(s)	108, 203, 233, 291, 301, 552
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	1 cut(s)	634
MaeIII	GTNAC	2 cut(s)	283, 431
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	7 cut(s)	111, 314, 383, 392, 418, 424, 538
MhlI	GDGCHC	1 cut(s)	51
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	3 cut(s)	193, 383, 628
MluNI	TGGCCA	1 cut(s)	458
Mox20I	TGGCCA	1 cut(s)	458
MscI	TGGCCA	1 cut(s)	458
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	1 cut(s)	616
NmeAIII	GCCGAG	2 cut(s)	66, 445
NmuCI	GTSAC	2 cut(s)	283, 431
NspV	TTCGAA	2 cut(s)	254, 518
PceI	AGGCCT	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	116, 319
PkrI	GCNGC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	243
PstNI	CAGNNNCTG	2 cut(s)	278, 572
RsaI	GTAC	2 cut(s)	368, 497
RsaNI	GTAC	2 cut(s)	367, 496
RseI	CAYNNNNRTG	1 cut(s)	359
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	634
SfuI	TTCGAA	2 cut(s)	254, 518
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	193, 383, 628
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	3 cut(s)	5, 145, 503
StuI	AGGCCT	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	296, 495
TaqI	TCGA	5 cut(s)	45, 138, 211, 254, 518
TasI	AATT	3 cut(s)	193, 383, 628
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	2 cut(s)	116, 319
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	2 cut(s)	283, 431
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	2 cut(s)	283, 431
TspDTI	ATGAA	2 cut(s)	252, 425
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.