Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Forward (+)

50811611 .. 50814208

Gene Structure 2598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0398000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTCTTCAGGGAAGCTAATTTGGTCGCAGATAATTTTGCTATCTCAGGACAAAGATACTCTCAAAGTTGTATTTGGTTTAACAATTTTCCTACTGATTCTCCAAAACTTTTCCACCAGAATCTTTTGCAAGATGAACCCCCGATCGAACGAGAAAATCCCCACCGTGGCACCACTCTACCTCCGCCGGCCGAAAATGAAAGAATCGGTGGAAGCCGTGGAGCGGATCCTAGACTATGACTTCAAGAACAAGAGGCTTCTAGAGGAAGCTCTCACCCACCCCTCCTGCCGCATAAGCGACGCCGCCGTTTCGTATCAGCGGCTCGCGTTCCTCGGCGACACCGTTCTTGACCTCGCTGTAAGTAAATACCTCTTCCTTGCTTACCCTGGAATTCACCAAGGTGACCTCACTGAGCTACGCTCCGCTAACGTCAGCACCAAGAAGTTCGCACGTGTGGCTGTGAGACATGGGCTTTATACCTACCTTCGCCGCACTGCAACTGGTGTTCTCGATGATCAGGTTCGGGAGTTTACTGAAGCTGTAAGACGAGGAGAGGAGTCTGTAGAAGCCTGTAAAGTTCTTGCAGATATTGTGGAGTCTGTGGCTGGTGCTATTTATGTTGACTTGAATTTTGATCTGGAACAACTTTGGATGAAATTTAAGCATGTTTTGGAGCCTATAGTTACTCTTGAAGAGTTGCAGCAGCAACCTCATCTTGTGACAGAGTTGCGTCAACTTTGCCAGAAGCAGGGGAAGCATGTCAGTATCGAGTGCAGGAGAGATAAGATGAAGAGTAATATTGATGGGAAGTGTGTTGCCTTGGGTTCGGCTGAACAGAAAGAAATTGCTAAGGTCAATGCTGCTGAGCTGGCTCTGACGTTTTCCTCTTGTGGAGCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

300

Amino Acids

33.91

Weight (kDa)

8.38

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	83 - 211	3.1e-18	Ribonuclease-III-like
Ribonuclease_3	PF00636	106 - 208	3.7e-23	Ribonuclease III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccBSI	CCGCTC	1 cut(s)	223
AccII	CGCG	1 cut(s)	326
AciI	CCGC	7 cut(s)	184, 223, 289, 303, 319, 423, 490
AclWI	GGATC	2 cut(s)	220, 233
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	3 cut(s)	390, 628, 656
AcuI	CTGAAG	1 cut(s)	555
AcvI	CACGTG	1 cut(s)	452
AcyI	GRCGYC	1 cut(s)	300
AfiI	CCNNNNNNNGG	3 cut(s)	166, 222, 748
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	3 cut(s)	244, 628, 692
AjnI	CCWGG	1 cut(s)	385
AleI	CACNNNNGTG	1 cut(s)	399
AluBI	AGCT	6 cut(s)	16, 269, 415, 539, 868, 896
AluI	AGCT	6 cut(s)	16, 269, 415, 539, 868, 896
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	2 cut(s)	220, 233
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	700, 703, 860
ApoI	RAATTY	3 cut(s)	390, 628, 656
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
AsuHPI	GGTGA	3 cut(s)	265, 386, 413
BamHI	GGATCC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	169
BbrPI	CACGTG	1 cut(s)	452
BbvI	GCAGC	3 cut(s)	712, 715, 847
BccI	CCATC	1 cut(s)	797
BceAI	ACGGC	2 cut(s)	200, 290
BciT130I	CCWGG	1 cut(s)	387
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	2 cut(s)	230, 260
BfmI	CTRYAG	2 cut(s)	561, 678
BisI	GCNGC	7 cut(s)	289, 303, 320, 490, 701, 704, 861
BlpI	GCTNAGC	1 cut(s)	864
BlsI	GCNGC	7 cut(s)	290, 304, 321, 491, 702, 705, 862
Bme1390I	CCNGG	1 cut(s)	387
BmiI	GGNNCC	3 cut(s)	171, 227, 675
BmrFI	CCNGG	1 cut(s)	387
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
Bpu10I	CCTNAGC	1 cut(s)	849
Bpu1102I	GCTNAGC	1 cut(s)	864
BsaAI	YACGTR	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	6 cut(s)	165, 216, 331, 385, 397, 819
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 165, 195
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 222, 748
Bse118I	RCCGGY	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	6 cut(s)	165, 216, 331, 385, 397, 819
BseGI	GGATG	1 cut(s)	657
BseLI	CCNNNNNNNGG	3 cut(s)	166, 222, 748
BseMII	CTCAG	3 cut(s)	59, 402, 855
BseNI	ACTGG	1 cut(s)	505
BseRI	GAGGAG	2 cut(s)	564, 569
BseX3I	CGGCCG	1 cut(s)	188
BseXI	GCAGC	3 cut(s)	712, 715, 847
BsgI	GTGCAG	1 cut(s)	793
Bsh1236I	CGCG	1 cut(s)	326
Bsh1285I	CGRYCG	2 cut(s)	146, 191
BshFI	GGCC	1 cut(s)	190
BshNI	GGYRCC	1 cut(s)	169
BsiEI	CGRYCG	2 cut(s)	146, 191
BsiSI	CCGG	1 cut(s)	187
BslI	CCNNNNNNNGG	3 cut(s)	166, 222, 748
BsmAI	GTCTC	1 cut(s)	457
BsnI	GGCC	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	143, 225, 514, 634
Bsp1720I	GCTNAGC	1 cut(s)	864
BspACI	CCGC	7 cut(s)	184, 223, 289, 303, 319, 423, 490
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	3 cut(s)	58, 403, 856
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	3 cut(s)	171, 227, 675
BspPI	GGATC	2 cut(s)	220, 233
BspT107I	GGYRCC	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	505
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	6 cut(s)	165, 216, 331, 385, 397, 819
BssMI	GATC	4 cut(s)	143, 225, 514, 634
BssNI	GRCGYC	1 cut(s)	300
BssT1I	CCWWGG	2 cut(s)	397, 819
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	166, 343
Bst6I	CTCTTC	3 cut(s)	377, 687, 785
BstACI	GRCGYC	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	452
BstC8I	GCNNGC	3 cut(s)	188, 324, 870
BstDEI	CTNAG	4 cut(s)	45, 411, 849, 864
BstDSI	CCRYGG	2 cut(s)	165, 216
BstEII	GGTNACC	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	657
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	4 cut(s)	146, 228, 517, 637
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	4 cut(s)	143, 225, 514, 634
BstMCI	CGRYCG	2 cut(s)	146, 191
BstMWI	GCNNNNNNNGC	4 cut(s)	294, 455, 754, 869
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	2 cut(s)	668, 761
BstPI	GGTNACC	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	385
BstSFI	CTRYAG	2 cut(s)	561, 678
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	712, 715, 847
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BstZI	CGGCCG	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	190
BtgI	CCRYGG	2 cut(s)	165, 216
BtsCI	GGATG	1 cut(s)	657
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	2 cut(s)	408, 492
Cac8I	GCNNGC	3 cut(s)	188, 324, 870
Cfr10I	RCCGGY	1 cut(s)	186
CseI	GACGC	2 cut(s)	308, 719
CviAII	CATG	3 cut(s)	467, 665, 758
DdeI	CTNAG	4 cut(s)	45, 411, 849, 864
DpnI	GATC	4 cut(s)	145, 227, 516, 636
DpnII	GATC	4 cut(s)	143, 225, 514, 634
EaeI	YGGCCR	1 cut(s)	188
EagI	CGGCCG	1 cut(s)	188
Eam1104I	CTCTTC	3 cut(s)	377, 687, 785
EarI	CTCTTC	3 cut(s)	377, 687, 785
EciI	GGCGGA	1 cut(s)	173
EclXI	CGGCCG	1 cut(s)	188
Eco130I	CCWWGG	2 cut(s)	397, 819
Eco52I	CGGCCG	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	555
Eco72I	CACGTG	1 cut(s)	452
Eco91I	GGTNACC	1 cut(s)	401
EcoO65I	GGTNACC	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	397, 819
ErhI	CCWWGG	2 cut(s)	397, 819
FaeI	CATG	3 cut(s)	470, 668, 761
FaiI	YATR	8 cut(s)	237, 293, 468, 477, 618, 666, 680, 759
FatI	CATG	3 cut(s)	466, 664, 757
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	7 cut(s)	289, 303, 320, 490, 701, 704, 861
FokI	GGATG	1 cut(s)	664
Fsp4HI	GCNGC	7 cut(s)	289, 303, 320, 490, 701, 704, 861
FspBI	CTAG	2 cut(s)	230, 260
GluI	GCNGC	7 cut(s)	289, 303, 320, 490, 701, 704, 861
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	187
HgaI	GACGC	2 cut(s)	308, 719
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	3 cut(s)	470, 668, 761
HincII	GTYRAC	2 cut(s)	622, 734
HindII	GTYRAC	2 cut(s)	622, 734
HinfI	GANTC	5 cut(s)	97, 120, 203, 557, 596
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	3 cut(s)	265, 386, 413
Hpy166II	GTNNAC	3 cut(s)	531, 622, 734
Hpy188I	TCNGA	1 cut(s)	876
Hpy188III	TCNNGA	8 cut(s)	47, 244, 260, 347, 509, 524, 638, 689
Hpy8I	GTNNAC	3 cut(s)	531, 622, 734
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	494
HpyCH4III	ACNGT	2 cut(s)	166, 343
HpyCH4IV	ACGT	3 cut(s)	429, 451, 878
HpyCH4V	TGCA	5 cut(s)	129, 497, 584, 700, 774
HpyF10VI	GCNNNNNNNGC	4 cut(s)	294, 455, 754, 869
HpyF3I	CTNAG	4 cut(s)	45, 411, 849, 864
HpySE526I	ACGT	3 cut(s)	429, 451, 878
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	470, 668, 761
KroI	GCCGGC	1 cut(s)	186
KroNI	GCCGGC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	4 cut(s)	143, 225, 514, 634
LmnI	GCTCC	4 cut(s)	220, 425, 673, 893
Lsp1109I	GCAGC	3 cut(s)	712, 715, 847
MaeI	CTAG	2 cut(s)	230, 260
MaeII	ACGT	3 cut(s)	429, 451, 878
MaeIII	GTNAC	3 cut(s)	401, 682, 718
MalI	GATC	4 cut(s)	145, 227, 516, 636
MbiI	CCGCTC	1 cut(s)	223
MboI	GATC	4 cut(s)	143, 225, 514, 634
MboII	GAAGA	3 cut(s)	364, 704, 802
MflI	RGATCY	1 cut(s)	225
MluCI	AATT	7 cut(s)	18, 33, 84, 390, 628, 656, 843
MlyI	GAGTC	2 cut(s)	566, 605
MroNI	GCCGGC	1 cut(s)	186
MseI	TTAA	2 cut(s)	80, 660
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	387
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	294, 455, 754, 869
NaeI	GCCGGC	1 cut(s)	188
NdeII	GATC	4 cut(s)	143, 225, 514, 634
NgoMIV	GCCGGC	1 cut(s)	186
NlaIII	CATG	3 cut(s)	470, 668, 761
NlaIV	GGNNCC	3 cut(s)	171, 227, 675
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	401, 718
NspI	RCATGY	2 cut(s)	668, 761
OliI	CACNNNNGTG	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	97, 120, 203
PkrI	GCNGC	7 cut(s)	290, 304, 321, 491, 702, 705, 862
Ple19I	CGATCG	1 cut(s)	146
PleI	GAGTC	2 cut(s)	565, 604
PmaCI	CACGTG	1 cut(s)	452
PmlI	CACGTG	1 cut(s)	452
PpsI	GAGTC	2 cut(s)	565, 604
Ppu21I	YACGTR	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	385
PspCI	CACGTG	1 cut(s)	452
PspEI	GGTNACC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	3 cut(s)	171, 227, 675
PsuI	RGATCY	1 cut(s)	225
PvuI	CGATCG	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	80, 660
SatI	GCNGC	7 cut(s)	289, 303, 320, 490, 701, 704, 861
Sau3AI	GATC	4 cut(s)	143, 225, 514, 634
SchI	GAGTC	2 cut(s)	566, 605
ScrFI	CCNGG	1 cut(s)	387
SfcI	CTRYAG	2 cut(s)	561, 678
SmiMI	CAYNNNNRTG	1 cut(s)	399
Sse9I	AATT	7 cut(s)	18, 33, 84, 390, 628, 656, 843
SsiI	CCGC	7 cut(s)	184, 223, 289, 303, 319, 423, 490
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	2 cut(s)	230, 260
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	2 cut(s)	397, 819
TaaI	ACNGT	2 cut(s)	166, 343
TaiI	ACGT	3 cut(s)	432, 454, 881
TaqI	TCGA	3 cut(s)	146, 510, 768
TasI	AATT	7 cut(s)	18, 33, 84, 390, 628, 656, 843
TauI	GCSGC	4 cut(s)	291, 305, 322, 492
TfiI	GAWTC	3 cut(s)	97, 120, 203
Tru1I	TTAA	2 cut(s)	80, 660
Tru9I	TTAA	2 cut(s)	80, 660
TscAI	CASTG	2 cut(s)	415, 499
TseFI	GTSAC	2 cut(s)	401, 718
TseI	GCWGC	3 cut(s)	700, 703, 860
Tsp45I	GTSAC	2 cut(s)	401, 718
TspDTI	ATGAA	4 cut(s)	149, 212, 668, 803
TspRI	CASTG	2 cut(s)	415, 499
XapI	RAATTY	3 cut(s)	390, 628, 656
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	2 cut(s)	668, 761
XspI	CTAG	2 cut(s)	230, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.