Rh7BG361900

Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
38415984 .. 38418304
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG361900.1

Sequence Viewer

Length: 915 bp
ATGGCGACGACCACTGCTGCTCCTCCACGTCAGCTCTCCCAGAAGGAGGCTGACATCCAGATGATGTTGGCCGCCGAGGTCCATCTCGGAACCAAGAACTGCGATTTCCAGATGGACAGATACGTCTTCAAGCGCCGCAATGACGGTATTTACATTATCAACCTTGGGAAGACATGGGAAAAACTTCAGCTGGCTGCCAGGGTTATTGTTGCTATTGAAAACCCCAAGGACATCATTGTGCAGTCTGCAAGGCCTTACGGACAGAGGGCTGTCCTGAAATTTGCTCAGCACACTGGTGCTAATGCAATTGCCGGAAGGCACACTCCTGGTACATTTACCAATCAGCTCCAGACTTCATTCAATGAGCCCCGCCTTCTCATTTTGACCGACCCAAGGACTGATCACCAGCCAATTAAGGAAGCTGCTCTTGGAAACATTCCAACCATCGCCTTTTGTGATACTGATTCCCCCATGCGTTATGTTGACATTGGCATTCCAGCCAATAACAAGGGGAAGCACAGTATTGGATGCCTTTTCTGGTTGCTAGCAAGGATGGTTTTGCAGATGCGCGGTTCCGTTAGGCCAGGACATAAGTGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAGCCTGAGGAGGCCAAGCCACAGGAGGAGGAAGACACAGTCCAAGCTCCAGAGTACATTGCAGATTATTCTGCTGGTCTTGGTGGTGATCAATGGCCTGCCCAAATTGCTGATGCTTCTTGGTCTACAGAAGTGGCGGCCCCAGCTGGTGCTATTCCAGCAACTGCTGCTACCGGCTGGACTGGAGAACCAGTTGCGCAAGAGGGATGGGATTCTGCTCCAGCACCACCGGTTGCCGCTCCCATCCTTGAGGGTGGTGCTCCTGTAGTCGCCAGTGGTTGGGATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

304

Amino Acids

33.16

Weight (kDa)

5.32

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S2 PF00318 22 - 115 1.7e-12 Ribosomal protein S2
Ribosomal_S2 PF00318 121 - 186 1.7e-11 Ribosomal protein S2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
Acc16I TGCGCA 1 cut(s) 825
AccB7I CCANNNNNTGG 1 cut(s) 906
AccBSI CCGCTC 1 cut(s) 866
AccI GTMKAC 1 cut(s) 752
AccII CGCG 1 cut(s) 570
AciI CCGC 6 cut(s) 72, 136, 370, 570, 764, 864
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 2 cut(s) 331, 683
AfiI CCNNNNNNNGG 3 cut(s) 46, 393, 906
AgeI ACCGGT 1 cut(s) 856
AgsI TTSAA 3 cut(s) 130, 218, 361
AjiI CACGTC 1 cut(s) 29
AjnI CCWGG 3 cut(s) 197, 325, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 6 cut(s) 34, 190, 346, 422, 674, 773
AluI AGCT 6 cut(s) 34, 190, 346, 422, 674, 773
Alw21I GWGCWC 1 cut(s) 889
AlwNI CAGNNNCTG 1 cut(s) 791
AoxI GGCC 6 cut(s) 69, 251, 581, 639, 722, 765
ApeKI GCWGC 4 cut(s) 17, 194, 422, 794
ApoI RAATTY 1 cut(s) 278
AsiGI ACCGGT 1 cut(s) 856
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 3 cut(s) 135, 570, 826
AspS9I GGNCC 2 cut(s) 79, 766
AsuHPI GGTGA 2 cut(s) 395, 725
AsuNHI GCTAGC 1 cut(s) 544
AvaII GGWCC 1 cut(s) 79
AxyI CCTNAGG 1 cut(s) 633
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 3 cut(s) 118, 176, 666
Bbv12I GWGCWC 1 cut(s) 889
BbvI GCAGC 4 cut(s) 4, 181, 409, 781
BccI CCATC 6 cut(s) 90, 106, 452, 547, 828, 878
BciT130I CCWGG 3 cut(s) 199, 327, 585
BclI TGATCA 2 cut(s) 400, 715
BfaI CTAG 1 cut(s) 545
BfmI CTRYAG 3 cut(s) 622, 753, 891
BfoI RGCGCY 1 cut(s) 136
BisI GCNGC 8 cut(s) 18, 72, 136, 195, 423, 765, 795, 864
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 8 cut(s) 19, 73, 137, 196, 424, 766, 796, 865
Bme1390I CCNGG 3 cut(s) 199, 327, 585
Bme18I GGWCC 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 29
BmgT120I GGNCC 2 cut(s) 79, 766
BmiI GGNNCC 3 cut(s) 91, 574, 768
BmrFI CCNGG 3 cut(s) 199, 327, 585
BmsI GCATC 3 cut(s) 518, 555, 730
BmtI GCTAGC 1 cut(s) 548
BpiI GAAGAC 3 cut(s) 118, 176, 666
BpmI CTGGAG 4 cut(s) 332, 660, 831, 831
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 896
BsaJI CCNNGG 5 cut(s) 75, 163, 198, 225, 392
BsaWI WCCGGW 1 cut(s) 856
BsaXI ACNNNNNCTCC 3 cut(s) 34, 804, 834
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 393, 906
Bse118I RCCGGY 2 cut(s) 800, 856
Bse1I ACTGG 4 cut(s) 298, 814, 818, 900
Bse21I CCTNAGG 1 cut(s) 633
Bse3DI GCAATG 2 cut(s) 145, 684
BseBI CCWGG 3 cut(s) 199, 327, 585
BseDI CCNNGG 5 cut(s) 75, 163, 198, 225, 392
BseGI GGATG 6 cut(s) 54, 533, 558, 604, 839, 870
BseLI CCNNNNNNNGG 3 cut(s) 46, 393, 906
BseMI GCAATG 2 cut(s) 145, 684
BseMII CTCAG 2 cut(s) 299, 624
BseNI ACTGG 4 cut(s) 298, 814, 818, 900
BseRI GAGGAG 3 cut(s) 12, 650, 668
BseXI GCAGC 4 cut(s) 4, 181, 409, 781
BseYI CCCAGC 1 cut(s) 769
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 6 cut(s) 71, 253, 583, 641, 724, 767
BshTI ACCGGT 1 cut(s) 856
BsiHKAI GWGCWC 1 cut(s) 889
BsiSI CCGG 3 cut(s) 312, 801, 857
BslI CCNNNNNNNGG 3 cut(s) 46, 393, 906
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 6 cut(s) 71, 253, 583, 641, 724, 767
Bsp1286I GDGCHC 2 cut(s) 369, 889
Bsp143I GATC 2 cut(s) 400, 715
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 6 cut(s) 72, 136, 370, 570, 764, 864
BspANI GGCC 6 cut(s) 71, 253, 583, 641, 724, 767
BspCNI CTCAG 2 cut(s) 298, 625
BspFNI CGCG 1 cut(s) 570
BspLI GGNNCC 3 cut(s) 91, 574, 768
BspOI GCTAGC 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 866
BsrDI GCAATG 2 cut(s) 145, 684
BsrFI RCCGGY 2 cut(s) 800, 856
BsrI ACTGG 4 cut(s) 298, 814, 818, 900
BssAI RCCGGY 2 cut(s) 800, 856
BssECI CCNNGG 5 cut(s) 75, 163, 198, 225, 392
BssMI GATC 2 cut(s) 400, 715
BssT1I CCWWGG 3 cut(s) 163, 225, 392
Bst2UI CCWGG 3 cut(s) 199, 327, 585
Bst4CI ACNGT 3 cut(s) 146, 521, 667
BstAPI GCANNNNNTGC 1 cut(s) 794
BstC8I GCNNGC 3 cut(s) 192, 546, 726
BstDEI CTNAG 2 cut(s) 285, 633
BstF5I GGATG 6 cut(s) 54, 533, 558, 604, 839, 870
BstFNI CGCG 1 cut(s) 570
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 3 cut(s) 135, 570, 826
BstKTI GATC 2 cut(s) 403, 718
BstMBI GATC 2 cut(s) 400, 715
BstMWI GCNNNNNNNGC 4 cut(s) 734, 770, 785, 794
BstNI CCWGG 3 cut(s) 199, 327, 585
BstSCI CCNGG 3 cut(s) 197, 325, 583
BstSFI CTRYAG 3 cut(s) 622, 753, 891
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 4 cut(s) 4, 181, 409, 781
BstV2I GAAGAC 3 cut(s) 118, 176, 666
Bsu36I CCTNAGG 1 cut(s) 633
BsuRI GGCC 6 cut(s) 71, 253, 583, 641, 724, 767
BtgZI GCGATG 1 cut(s) 430
BtrI CACGTC 1 cut(s) 29
BtsCI GGATG 6 cut(s) 54, 533, 558, 604, 839, 870
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 291, 907
Cac8I GCNNGC 3 cut(s) 192, 546, 726
CaiI CAGNNNCTG 1 cut(s) 791
CfoI GCGC 3 cut(s) 135, 570, 826
Cfr10I RCCGGY 2 cut(s) 800, 856
Cfr13I GGNCC 2 cut(s) 79, 766
Csp6I GTAC 2 cut(s) 330, 682
CspAI ACCGGT 1 cut(s) 856
CviAII CATG 3 cut(s) 174, 472, 604
CviQI GTAC 2 cut(s) 330, 682
DdeI CTNAG 2 cut(s) 285, 633
DpnI GATC 2 cut(s) 402, 717
DpnII GATC 2 cut(s) 400, 715
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 69
Eco130I CCWWGG 3 cut(s) 163, 225, 392
Eco147I AGGCCT 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 170
Eco81I CCTNAGG 1 cut(s) 633
EcoRII CCWGG 3 cut(s) 197, 325, 583
EcoT14I CCWWGG 3 cut(s) 163, 225, 392
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 3 cut(s) 163, 225, 392
FaeI CATG 3 cut(s) 177, 475, 607
FaiI YATR 6 cut(s) 175, 473, 480, 591, 605, 624
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FatI CATG 3 cut(s) 173, 471, 603
FauI CCCGC 1 cut(s) 377
FbaI TGATCA 2 cut(s) 400, 715
FblI GTMKAC 1 cut(s) 752
Fnu4HI GCNGC 8 cut(s) 18, 72, 136, 195, 423, 765, 795, 864
FokI GGATG 6 cut(s) 41, 540, 565, 611, 846, 857
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 8 cut(s) 18, 72, 136, 195, 423, 765, 795, 864
FspBI CTAG 1 cut(s) 545
FspI TGCGCA 1 cut(s) 825
GlaI GCGC 3 cut(s) 134, 569, 825
GluI GCNGC 8 cut(s) 18, 72, 136, 195, 423, 765, 795, 864
GsaI CCCAGC 1 cut(s) 773
GsuI CTGGAG 4 cut(s) 332, 660, 831, 831
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 6 cut(s) 71, 253, 583, 641, 724, 767
HapII CCGG 3 cut(s) 312, 801, 857
HhaI GCGC 3 cut(s) 135, 570, 826
Hin1II CATG 3 cut(s) 177, 475, 607
Hin6I GCGC 3 cut(s) 133, 568, 824
HinP1I GCGC 3 cut(s) 133, 568, 824
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 2 cut(s) 464, 839
HpaII CCGG 3 cut(s) 312, 801, 857
HphI GGTGA 2 cut(s) 395, 725
Hpy166II GTNNAC 2 cut(s) 484, 753
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 5 cut(s) 58, 109, 274, 349, 677
Hpy8I GTNNAC 2 cut(s) 484, 753
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 37, 309, 383
HpyCH4III ACNGT 3 cut(s) 146, 521, 667
HpyCH4IV ACGT 2 cut(s) 28, 123
HpyCH4V TGCA 5 cut(s) 241, 248, 305, 562, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 734, 770, 785, 794
HpyF3I CTNAG 2 cut(s) 285, 633
HpySE526I ACGT 2 cut(s) 28, 123
Hsp92II CATG 3 cut(s) 177, 475, 607
HspAI GCGC 3 cut(s) 133, 568, 824
Ksp22I TGATCA 2 cut(s) 400, 715
Kzo9I GATC 2 cut(s) 400, 715
LmnI GCTCC 6 cut(s) 25, 351, 679, 850, 871, 892
Lsp1109I GCAGC 4 cut(s) 4, 181, 409, 781
LweI GCATC 3 cut(s) 518, 555, 730
MaeI CTAG 1 cut(s) 545
MaeII ACGT 2 cut(s) 28, 123
MalI GATC 2 cut(s) 402, 717
MbiI CCGCTC 1 cut(s) 866
MboI GATC 2 cut(s) 400, 715
MboII GAAGA 4 cut(s) 118, 181, 610, 671
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 2 cut(s) 369, 889
MluCI AATT 4 cut(s) 278, 306, 411, 732
MmeI TCCRAC 1 cut(s) 464
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 2 cut(s) 414, 913
MslI CAYNNNNRTG 3 cut(s) 59, 236, 294
MspA1I CMGCKG 2 cut(s) 190, 773
MspI CCGG 3 cut(s) 312, 801, 857
MspR9I CCNGG 3 cut(s) 199, 327, 585
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 3 cut(s) 199, 327, 585
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 4 cut(s) 734, 770, 785, 794
NdeII GATC 2 cut(s) 400, 715
NheI GCTAGC 1 cut(s) 544
NlaIII CATG 3 cut(s) 177, 475, 607
NlaIV GGNNCC 3 cut(s) 91, 574, 768
NmeAIII GCCGAG 1 cut(s) 100
NsbI TGCGCA 1 cut(s) 825
OliI CACNNNNGTG 1 cut(s) 294
PceI AGGCCT 1 cut(s) 253
PctI GAATGC 1 cut(s) 492
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 2 cut(s) 464, 839
PflFI GACNNNGTC 1 cut(s) 665
PflMI CCANNNNNTGG 1 cut(s) 906
PinAI ACCGGT 1 cut(s) 856
PkrI GCNGC 8 cut(s) 19, 73, 137, 196, 424, 766, 796, 865
Psp6I CCWGG 3 cut(s) 197, 325, 583
PspFI CCCAGC 1 cut(s) 769
PspGI CCWGG 3 cut(s) 197, 325, 583
PspN4I GGNNCC 3 cut(s) 91, 574, 768
PspPI GGNCC 2 cut(s) 79, 766
PstNI CAGNNNCTG 1 cut(s) 791
PsyI GACNNNGTC 1 cut(s) 665
PvuII CAGCTG 2 cut(s) 190, 773
RsaI GTAC 2 cut(s) 331, 683
RsaNI GTAC 2 cut(s) 330, 682
RseI CAYNNNNRTG 3 cut(s) 59, 236, 294
SaqAI TTAA 2 cut(s) 414, 913
SatI GCNGC 8 cut(s) 18, 72, 136, 195, 423, 765, 795, 864
Sau3AI GATC 2 cut(s) 400, 715
Sau96I GGNCC 2 cut(s) 79, 766
ScrFI CCNGG 3 cut(s) 199, 327, 585
SduI GDGCHC 2 cut(s) 369, 889
SfaNI GCATC 3 cut(s) 518, 555, 730
SfcI CTRYAG 3 cut(s) 622, 753, 891
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 3 cut(s) 59, 236, 294
SmlI CTYRAG 1 cut(s) 875
SmoI CTYRAG 1 cut(s) 875
Sse9I AATT 4 cut(s) 278, 306, 411, 732
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 6 cut(s) 72, 136, 370, 570, 764, 864
SspMI CTAG 1 cut(s) 545
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 3 cut(s) 197, 325, 583
StyI CCWWGG 3 cut(s) 163, 225, 392
TaaI ACNGT 3 cut(s) 146, 521, 667
TaiI ACGT 2 cut(s) 31, 126
TaqII GACCGA 1 cut(s) 401
TasI AATT 4 cut(s) 278, 306, 411, 732
TatI WGTACW 1 cut(s) 681
TauI GCSGC 4 cut(s) 74, 138, 767, 866
TfiI GAWTC 2 cut(s) 464, 839
Tru1I TTAA 2 cut(s) 414, 913
Tru9I TTAA 2 cut(s) 414, 913
TscAI CASTG 3 cut(s) 19, 298, 907
TseI GCWGC 4 cut(s) 17, 194, 422, 794
TspDTI ATGAA 1 cut(s) 345
TspGWI ACGGA 2 cut(s) 273, 565
TspRI CASTG 3 cut(s) 19, 298, 907
Tth111I GACNNNGTC 1 cut(s) 665
Van91I CCANNNNNTGG 1 cut(s) 906
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 278
XcmI CCANNNNNNNNNTGG 1 cut(s) 591
XmiI GTMKAC 1 cut(s) 752
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.