Rw2G037130

Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
61146279 .. 61148206
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037130.1

Sequence Viewer

Length: 906 bp
ATGGCGACGACAACCGCCGCTCCTCCACGTCAGCTCTCGCAGAAGGAGGCCGACATCCAGATGATGTTGGCCGCCGAGGTCCATCTCGGCACCAAAAACTGCGACTTTCAGATGGAGCGTTACGTCTTCAAGCGCCGCAACGATGGGATTTATATCATCAATCTTGGGAAGACATGGGAGAAACTTCAGCTAGCTGCTAGGGTGATTGTTGCTATTGAAAACCCCAAGGACATCATTGTGCAGTCCGCCAGGCCTTATGGGCAGAGGGCTGTCCTCAAGTTTGCTCAGCACACTGGTGCTAATGCCATTGCCGGAAGGCACACTCCCGGTACTTTCACCAACCAGCTTCAGACTTCCTTCAACGAGCCCCGGCTCCTCATTTTGACCGACCCAAGAACTGATCACCAGCCAATTAAGGAAGCTGCACTTGGGAACATTCCCACCATCGCTTTCTGCGATACTGACTCACCCATGCGTTATGTTGACATTGGCATCCCGGCCAATAATAAGGGGAAGCACAGTATTGGATGTCTTTTCTGGTTGCTGGCAAGGATGGTTTTGCAAATGCGCGGTTCCGTTAGGCCAGGACATAAGTGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAGCCTGAGGAGGCCAAGCAACAAGAGGAGGAAGAAGCGGTGCAAGCTCCAGAGTACATTGAATATTCTGGTGGTCTTGGTGGCGATCAGTGGCCTACCCAAATTGCTGATGCTTCTTGGTCTGCTGATGCAGCCCCAGCTATCCCAGCAGTTCCTGCTGCCGGCTGGACTGCAGAACCAGGTGTGGCACAAGAAGGTTGGGATGCTGCTCCTGCACCAGTGGTCGCCGCTCCTATCCTTGAGGATGGTGCTCCCGTAGTGGCCAGTGGTTGGGATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

301

Amino Acids

32.98

Weight (kDa)

5.23

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S2 PF00318 22 - 115 1.1e-12 Ribosomal protein S2
Ribosomal_S2 PF00318 121 - 186 1.7e-11 Ribosomal protein S2
40S_SA_C PF16122 206 - 284 5e-06 40S ribosomal protein SA C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 897
AccBSI CCGCTC 2 cut(s) 20, 857
AccII CGCG 1 cut(s) 570
AciI CCGC 8 cut(s) 15, 18, 72, 136, 246, 570, 665, 855
AcoI YGGCCR 3 cut(s) 69, 498, 888
AcuI CTGAAG 2 cut(s) 170, 332
AfaI GTAC 2 cut(s) 331, 683
AfiI CCNNNNNNNGG 2 cut(s) 788, 897
AgsI TTSAA 4 cut(s) 130, 218, 361, 689
AjiI CACGTC 1 cut(s) 29
AjnI CCWGG 3 cut(s) 248, 583, 805
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 7 cut(s) 34, 190, 194, 346, 422, 674, 767
AluI AGCT 7 cut(s) 34, 190, 194, 346, 422, 674, 767
Alw21I GWGCWC 1 cut(s) 880
AlwNI CAGNNNCTG 1 cut(s) 782
AoxI GGCC 8 cut(s) 48, 69, 251, 498, 581, 639, 719, 888
ApeKI GCWGC 5 cut(s) 194, 422, 758, 785, 833
AspLEI GCGC 2 cut(s) 135, 570
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 3 cut(s) 327, 370, 497
AsuHPI GGTGA 4 cut(s) 214, 328, 395, 459
AsuNHI GCTAGC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 79
AxyI CCTNAGG 1 cut(s) 633
BalI TGGCCA 1 cut(s) 890
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 2 cut(s) 118, 176
Bbv12I GWGCWC 1 cut(s) 880
BbvI GCAGC 5 cut(s) 181, 409, 770, 772, 820
BccI CCATC 6 cut(s) 90, 106, 137, 452, 547, 866
BciT130I CCWGG 3 cut(s) 250, 585, 807
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 3 cut(s) 327, 370, 497
BfaI CTAG 2 cut(s) 191, 198
BfmI CTRYAG 2 cut(s) 622, 798
BfoI RGCGCY 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 259
BisI GCNGC 9 cut(s) 18, 72, 136, 195, 423, 759, 786, 834, 855
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 9 cut(s) 19, 73, 137, 196, 424, 760, 787, 835, 856
Bme1390I CCNGG 6 cut(s) 250, 327, 370, 497, 585, 807
Bme18I GGWCC 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 3 cut(s) 91, 374, 574
BmrFI CCNGG 6 cut(s) 250, 327, 370, 497, 585, 807
BmsI GCATC 4 cut(s) 501, 727, 745, 820
BmtI GCTAGC 1 cut(s) 194
BpiI GAAGAC 2 cut(s) 118, 176
BpmI CTGGAG 1 cut(s) 660
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 260, 887
BpuMI CCSGG 3 cut(s) 327, 370, 497
BsaBI GATNNNNATC 1 cut(s) 152
BsaJI CCNNGG 3 cut(s) 75, 225, 368
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 788, 897
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 3 cut(s) 298, 845, 891
Bse21I CCTNAGG 1 cut(s) 633
Bse3DI GCAATG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 152
BseBI CCWGG 3 cut(s) 250, 585, 807
BseDI CCNNGG 3 cut(s) 75, 225, 368
BseGI GGATG 7 cut(s) 54, 492, 533, 558, 604, 835, 877
BseJI GATNNNNATC 1 cut(s) 152
BseLI CCNNNNNNNGG 2 cut(s) 788, 897
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 299, 624
BseNI ACTGG 3 cut(s) 298, 845, 891
BseRI GAGGAG 4 cut(s) 12, 365, 650, 668
BseXI GCAGC 5 cut(s) 181, 409, 770, 772, 820
BseYI CCCAGC 2 cut(s) 763, 772
BsgI GTGCAG 3 cut(s) 260, 408, 825
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 8 cut(s) 50, 71, 253, 500, 583, 641, 721, 890
BshNI GGYRCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 880
BsiSI CCGG 5 cut(s) 312, 327, 370, 497, 789
BslI CCNNNNNNNGG 2 cut(s) 788, 897
BsnI GGCC 8 cut(s) 50, 71, 253, 500, 583, 641, 721, 890
Bsp1286I GDGCHC 2 cut(s) 369, 880
Bsp143I GATC 2 cut(s) 400, 712
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 8 cut(s) 15, 18, 72, 136, 246, 570, 665, 855
BspANI GGCC 8 cut(s) 50, 71, 253, 500, 583, 641, 721, 890
BspCNI CTCAG 2 cut(s) 298, 625
BspFNI CGCG 1 cut(s) 570
BspLI GGNNCC 3 cut(s) 91, 374, 574
BspMAI CTGCAG 1 cut(s) 802
BspOI GCTAGC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 89
BsrBI CCGCTC 2 cut(s) 20, 857
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 3 cut(s) 298, 845, 891
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 3 cut(s) 75, 225, 368
BssMI GATC 2 cut(s) 400, 712
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 3 cut(s) 250, 585, 807
Bst4CI ACNGT 1 cut(s) 521
BstAPI GCANNNNNTGC 1 cut(s) 782
BstC8I GCNNGC 4 cut(s) 192, 546, 672, 790
BstDEI CTNAG 2 cut(s) 285, 633
BstF5I GGATG 7 cut(s) 54, 492, 533, 558, 604, 835, 877
BstFNI CGCG 1 cut(s) 570
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 2 cut(s) 135, 570
BstKTI GATC 2 cut(s) 403, 715
BstMBI GATC 2 cut(s) 400, 712
BstMWI GCNNNNNNNGC 7 cut(s) 259, 671, 758, 764, 773, 782, 839
BstNI CCWGG 3 cut(s) 250, 585, 807
BstSCI CCNGG 6 cut(s) 248, 325, 368, 495, 583, 805
BstSFI CTRYAG 2 cut(s) 622, 798
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 5 cut(s) 181, 409, 770, 772, 820
BstV2I GAAGAC 2 cut(s) 118, 176
Bsu36I CCTNAGG 1 cut(s) 633
BsuRI GGCC 8 cut(s) 50, 71, 253, 500, 583, 641, 721, 890
BtgZI GCGATG 1 cut(s) 430
BtrI CACGTC 1 cut(s) 29
BtsCI GGATG 7 cut(s) 54, 492, 533, 558, 604, 835, 877
BtsIMutI CAGTG 4 cut(s) 291, 722, 852, 898
Cac8I GCNNGC 4 cut(s) 192, 546, 672, 790
CaiI CAGNNNCTG 1 cut(s) 782
CfoI GCGC 2 cut(s) 135, 570
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 1 cut(s) 79
CsiI ACCWGGT 1 cut(s) 805
Csp6I GTAC 2 cut(s) 330, 682
CviAII CATG 3 cut(s) 174, 472, 604
CviQI GTAC 2 cut(s) 330, 682
DdeI CTNAG 2 cut(s) 285, 633
DpnI GATC 2 cut(s) 402, 714
DpnII GATC 2 cut(s) 400, 712
EaeI YGGCCR 3 cut(s) 69, 498, 888
EciI GGCGGA 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 225
Eco147I AGGCCT 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 170, 332
Eco81I CCTNAGG 1 cut(s) 633
EcoRII CCWGG 3 cut(s) 248, 583, 805
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 3 cut(s) 177, 475, 607
FaiI YATR 8 cut(s) 153, 175, 258, 473, 480, 591, 605, 624
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FatI CATG 3 cut(s) 173, 471, 603
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 9 cut(s) 18, 72, 136, 195, 423, 759, 786, 834, 855
FokI GGATG 7 cut(s) 41, 479, 540, 565, 611, 842, 884
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 9 cut(s) 18, 72, 136, 195, 423, 759, 786, 834, 855
FspBI CTAG 2 cut(s) 191, 198
GlaI GCGC 2 cut(s) 134, 569
GluI GCNGC 9 cut(s) 18, 72, 136, 195, 423, 759, 786, 834, 855
GsaI CCCAGC 2 cut(s) 767, 776
GsuI CTGGAG 1 cut(s) 660
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 8 cut(s) 50, 71, 253, 500, 583, 641, 721, 890
HapII CCGG 5 cut(s) 312, 327, 370, 497, 789
HhaI GCGC 2 cut(s) 135, 570
Hin1II CATG 3 cut(s) 177, 475, 607
Hin6I GCGC 2 cut(s) 133, 568
HinP1I GCGC 2 cut(s) 133, 568
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 1 cut(s) 464
HpaII CCGG 5 cut(s) 312, 327, 370, 497, 789
HphI GGTGA 4 cut(s) 214, 328, 395, 459
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 2 cut(s) 111, 351
Hpy188III TCNNGA 2 cut(s) 58, 677
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 37, 309, 367, 815
HpyCH4III ACNGT 1 cut(s) 521
HpyCH4IV ACGT 2 cut(s) 28, 123
HpyCH4V TGCA 7 cut(s) 241, 425, 562, 670, 758, 800, 842
HpyF10VI GCNNNNNNNGC 7 cut(s) 259, 671, 758, 764, 773, 782, 839
HpyF3I CTNAG 2 cut(s) 285, 633
HpySE526I ACGT 2 cut(s) 28, 123
Hsp92II CATG 3 cut(s) 177, 475, 607
HspAI GCGC 2 cut(s) 133, 568
KroI GCCGGC 1 cut(s) 788
KroNI GCCGGC 1 cut(s) 790
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 2 cut(s) 400, 712
LmnI GCTCC 7 cut(s) 25, 115, 378, 679, 841, 862, 883
Lsp1109I GCAGC 5 cut(s) 181, 409, 770, 772, 820
LweI GCATC 4 cut(s) 501, 727, 745, 820
MabI ACCWGGT 1 cut(s) 805
MaeI CTAG 2 cut(s) 191, 198
MaeII ACGT 2 cut(s) 28, 123
MaeIII GTNAC 1 cut(s) 119
MalI GATC 2 cut(s) 402, 714
MbiI CCGCTC 2 cut(s) 20, 857
MboI GATC 2 cut(s) 400, 712
MboII GAAGA 4 cut(s) 118, 181, 610, 671
MhlI GDGCHC 2 cut(s) 369, 880
MlsI TGGCCA 1 cut(s) 890
MluCI AATT 2 cut(s) 411, 729
MluNI TGGCCA 1 cut(s) 890
MlyI GAGTC 1 cut(s) 458
Mox20I TGGCCA 1 cut(s) 890
MroNI GCCGGC 1 cut(s) 788
MscI TGGCCA 1 cut(s) 890
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 3 cut(s) 59, 236, 294
Msp20I TGGCCA 1 cut(s) 890
MspI CCGG 5 cut(s) 312, 327, 370, 497, 789
MspR9I CCNGG 6 cut(s) 250, 327, 370, 497, 585, 807
MvaI CCWGG 3 cut(s) 250, 585, 807
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 7 cut(s) 259, 671, 758, 764, 773, 782, 839
NaeI GCCGGC 1 cut(s) 790
NciI CCSGG 3 cut(s) 327, 370, 497
NdeII GATC 2 cut(s) 400, 712
NgoMIV GCCGGC 1 cut(s) 788
NheI GCTAGC 1 cut(s) 190
NlaIII CATG 3 cut(s) 177, 475, 607
NlaIV GGNNCC 3 cut(s) 91, 374, 574
NmeAIII GCCGAG 2 cut(s) 66, 100
OliI CACNNNNGTG 1 cut(s) 294
PceI AGGCCT 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PdiI GCCGGC 1 cut(s) 790
PflMI CCANNNNNTGG 1 cut(s) 897
PkrI GCNGC 9 cut(s) 19, 73, 137, 196, 424, 760, 787, 835, 856
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
Psp6I CCWGG 3 cut(s) 248, 583, 805
PspFI CCCAGC 2 cut(s) 763, 772
PspGI CCWGG 3 cut(s) 248, 583, 805
PspN4I GGNNCC 3 cut(s) 91, 374, 574
PspPI GGNCC 1 cut(s) 79
PstI CTGCAG 1 cut(s) 802
PstNI CAGNNNCTG 1 cut(s) 782
RsaI GTAC 2 cut(s) 331, 683
RsaNI GTAC 2 cut(s) 330, 682
RseI CAYNNNNRTG 3 cut(s) 59, 236, 294
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 9 cut(s) 18, 72, 136, 195, 423, 759, 786, 834, 855
Sau3AI GATC 2 cut(s) 400, 712
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 6 cut(s) 250, 327, 370, 497, 585, 807
SduI GDGCHC 2 cut(s) 369, 880
SexAI ACCWGGT 1 cut(s) 805
SfaNI GCATC 4 cut(s) 501, 727, 745, 820
SfcI CTRYAG 2 cut(s) 622, 798
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 3 cut(s) 59, 236, 294
SmlI CTYRAG 2 cut(s) 275, 866
SmoI CTYRAG 2 cut(s) 275, 866
Sse9I AATT 2 cut(s) 411, 729
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 8 cut(s) 15, 18, 72, 136, 246, 570, 665, 855
SspI AATATT 1 cut(s) 692
SspMI CTAG 2 cut(s) 191, 198
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 6 cut(s) 248, 325, 368, 495, 583, 805
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 521
TaiI ACGT 2 cut(s) 31, 126
TaqII GACCGA 1 cut(s) 401
TasI AATT 2 cut(s) 411, 729
TatI WGTACW 1 cut(s) 681
TauI GCSGC 4 cut(s) 20, 74, 138, 857
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 4 cut(s) 298, 722, 852, 898
TseI GCWGC 5 cut(s) 194, 422, 758, 785, 833
TspGWI ACGGA 1 cut(s) 565
TspRI CASTG 4 cut(s) 298, 722, 852, 898
Van91I CCANNNNNTGG 1 cut(s) 897
VpaK11BI GGWCC 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 591
XspI CTAG 2 cut(s) 191, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.