MD10G1154500.v1.1

Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
24223202 .. 24225620
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1154500.v1.1.491

Sequence Viewer

Length: 915 bp
ATGGCGACCACCACCGCCGCGGCCCCGCGCCAGCTCTCTCAGAAAGAGGCTGACATCCAGATGATGTTGGCCGCCGAAGTCCATCTGGGCACCAAAAACTGCGATTTCCAGATGGAAAGATACGTCTTCAAGCGCCGCAATGACGGGATTTACATTATCAATCTTGGGAAAACTTGGGACAAGCTTCAGATGGCTGCCAGGGTGATTGTTGCGATTGAGAATCCTAAGGATATCATTGTACAATCAGCAAGGCCCTATGGACAGAGGGCTGTCCTGAAATTTGCTCAGCACACTGGTGCTAATGCTATTGCTGGAAGGCACACGCCTGGTACTTTCACAAATCAGCTCCAGACGTCGTTCAATGAGCCCCGTCTCCTCATTCTGACTGACCCACGAACTGATGCTCAGCCAATTAAGGAGGCTGCTTTGGGAAACATACCCACCATTGCTTTCTGTGATACTGATTCCCCTATGCGTTATGTTGATATTGGCATCCCTGCGAATAACAAGGGGAAGCACAGCATCGGATGTCTTTTCTGGCTCCTAGCAAGGATGGTTTTGCAGATGCGTGGTTCCCTCCGTCCAGGGCTTAAGTGGGATGTCATGGTTGATCTCTTCTTCTATAGAGACCCTGAGGAGGCCAAGGAAAAGGAAGATGAAGATCTTCCTCAAATCCCAGATTATGGAACTGCAGATTATGCTGCACCTGGTATCATCGGGGCTGATCAATGGCCTACCCAAGTTTCTGATGCTCCATGGCCAACAGATACCCCTACAACTATCCCGGCAGTTCCTGTTGTTGGCTGGACCGCAGAACCAGGCGCAGTAGGAGGAGAGTGGGATTCGATTCCTCCAGCACAAATTCCTGCTGCCGCGGTTGAAGGTGTTGTTCCTCCTCCTAGTCGCTGGGAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

305

Amino Acids

33.46

Weight (kDa)

5.24

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S2 PF00318 22 - 115 9.8e-13 Ribosomal protein S2
Ribosomal_S2 PF00318 121 - 186 4.7e-11 Ribosomal protein S2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 683
AccII CGCG 3 cut(s) 20, 28, 875
AciI CCGC 9 cut(s) 15, 18, 20, 26, 72, 136, 810, 873, 875
AcoI YGGCCR 2 cut(s) 69, 758
AcsI RAATTY 2 cut(s) 278, 861
AcuI CTGAAG 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 353
AfaI GTAC 2 cut(s) 240, 331
AfiI CCNNNNNNNGG 3 cut(s) 637, 683, 800
AflII CTTAAG 1 cut(s) 590
AgsI TTSAA 3 cut(s) 130, 361, 881
AjnI CCWGG 5 cut(s) 197, 325, 583, 706, 817
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 3 cut(s) 34, 184, 346
AluI AGCT 3 cut(s) 34, 184, 346
Alw26I GTCTC 2 cut(s) 377, 621
AlwNI CAGNNNCTG 1 cut(s) 794
AoxI GGCC 6 cut(s) 21, 69, 251, 639, 731, 758
ApeKI GCWGC 4 cut(s) 194, 422, 701, 869
ApoI RAATTY 2 cut(s) 278, 861
Asp700I GAANNNNTTC 1 cut(s) 663
AspLEI GCGC 3 cut(s) 30, 135, 824
AspS9I GGNCC 3 cut(s) 22, 252, 807
AsuC2I CCSGG 1 cut(s) 785
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 807
AxyI CCTNAGG 2 cut(s) 225, 633
BaeGI GKGCMC 1 cut(s) 92
BalI TGGCCA 1 cut(s) 760
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 4 cut(s) 181, 409, 688, 856
BccI CCATC 4 cut(s) 90, 106, 184, 547
BciT130I CCWGG 5 cut(s) 199, 327, 585, 708, 819
BclI TGATCA 1 cut(s) 724
BcnI CCSGG 1 cut(s) 785
BcoDI GTCTC 2 cut(s) 377, 621
BfaI CTAG 2 cut(s) 545, 900
BfmI CTRYAG 2 cut(s) 622, 690
BfoI RGCGCY 1 cut(s) 136
BfrI CTTAAG 1 cut(s) 590
BglII AGATCT 1 cut(s) 661
BisI GCNGC 9 cut(s) 18, 21, 72, 136, 195, 423, 702, 870, 873
BlpI GCTNAGC 2 cut(s) 285, 405
BlsI GCNGC 9 cut(s) 19, 22, 73, 137, 196, 424, 703, 871, 874
Bme1390I CCNGG 6 cut(s) 199, 327, 585, 708, 785, 819
Bme18I GGWCC 1 cut(s) 807
BmgT120I GGNCC 3 cut(s) 22, 252, 807
BmiI GGNNCC 4 cut(s) 24, 91, 542, 574
BmrFI CCNGG 6 cut(s) 199, 327, 585, 708, 785, 819
BmsI GCATC 5 cut(s) 391, 501, 531, 555, 739
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 2 cut(s) 332, 837
Bpu1102I GCTNAGC 2 cut(s) 285, 405
BpuMI CCSGG 1 cut(s) 785
BsaBI GATNNNNATC 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 621
BsaJI CCNNGG 6 cut(s) 18, 198, 584, 642, 755, 873
Bsc4I CCNNNNNNNGG 3 cut(s) 637, 683, 800
Bse1I ACTGG 1 cut(s) 298
Bse21I CCTNAGG 2 cut(s) 225, 633
Bse3DI GCAATG 2 cut(s) 145, 444
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 5 cut(s) 199, 327, 585, 708, 819
BseDI CCNNGG 6 cut(s) 18, 198, 584, 642, 755, 873
BseGI GGATG 5 cut(s) 54, 492, 533, 558, 604
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 3 cut(s) 637, 683, 800
BseMI GCAATG 2 cut(s) 145, 444
BseMII CTCAG 4 cut(s) 53, 299, 419, 624
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 4 cut(s) 365, 650, 846, 885
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 4 cut(s) 181, 409, 688, 856
BseYI CCCAGC 1 cut(s) 906
BsgI GTGCAG 1 cut(s) 687
Bsh1236I CGCG 3 cut(s) 20, 28, 875
BshFI GGCC 6 cut(s) 23, 71, 253, 641, 733, 760
BshNI GGYRCC 1 cut(s) 89
BsiSI CCGG 1 cut(s) 785
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 3 cut(s) 637, 683, 800
BsmAI GTCTC 2 cut(s) 377, 621
BsmBI CGTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 6 cut(s) 23, 71, 253, 641, 733, 760
Bso31I GGTCTC 1 cut(s) 621
Bsp1286I GDGCHC 2 cut(s) 92, 369
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 3 cut(s) 610, 661, 724
Bsp1720I GCTNAGC 2 cut(s) 285, 405
Bsp19I CCATGG 1 cut(s) 755
BspACI CCGC 9 cut(s) 15, 18, 20, 26, 72, 136, 810, 873, 875
BspANI GGCC 6 cut(s) 23, 71, 253, 641, 733, 760
BspCNI CTCAG 4 cut(s) 52, 298, 418, 625
BspFNI CGCG 3 cut(s) 20, 28, 875
BspLI GGNNCC 4 cut(s) 24, 91, 542, 574
BspMAI CTGCAG 1 cut(s) 694
BspT107I GGYRCC 1 cut(s) 89
BspTI CTTAAG 1 cut(s) 590
BspTNI GGTCTC 1 cut(s) 621
BsrDI GCAATG 2 cut(s) 145, 444
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 6 cut(s) 18, 198, 584, 642, 755, 873
BssMI GATC 3 cut(s) 610, 661, 724
BssNI GRCGYC 1 cut(s) 353
BssT1I CCWWGG 2 cut(s) 642, 755
Bst2UI CCWGG 5 cut(s) 199, 327, 585, 708, 819
Bst6I CTCTTC 1 cut(s) 620
BstACI GRCGYC 1 cut(s) 353
BstAFI CTTAAG 1 cut(s) 590
BstAPI GCANNNNNTGC 1 cut(s) 698
BstAUI TGTACA 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 5 cut(s) 39, 225, 285, 405, 633
BstDSI CCRYGG 3 cut(s) 18, 755, 873
BstF5I GGATG 5 cut(s) 54, 492, 533, 558, 604
BstFNI CGCG 3 cut(s) 20, 28, 875
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 3 cut(s) 30, 135, 824
BstKTI GATC 3 cut(s) 613, 664, 727
BstMAI GTCTC 2 cut(s) 377, 621
BstMBI GATC 3 cut(s) 610, 661, 724
BstMWI GCNNNNNNNGC 1 cut(s) 698
BstNI CCWGG 5 cut(s) 199, 327, 585, 708, 819
BstSCI CCNGG 6 cut(s) 197, 325, 583, 706, 783, 817
BstSFI CTRYAG 2 cut(s) 622, 690
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 3 cut(s) 20, 28, 875
BstV1I GCAGC 4 cut(s) 181, 409, 688, 856
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
Bsu36I CCTNAGG 2 cut(s) 225, 633
BsuRI GGCC 6 cut(s) 23, 71, 253, 641, 733, 760
BtgI CCRYGG 3 cut(s) 18, 755, 873
BtsCI GGATG 5 cut(s) 54, 492, 533, 558, 604
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 32
CaiI CAGNNNCTG 1 cut(s) 794
CfoI GCGC 3 cut(s) 30, 135, 824
Cfr13I GGNCC 3 cut(s) 22, 252, 807
Cfr42I CCGCGG 2 cut(s) 21, 876
CsiI ACCWGGT 1 cut(s) 706
Csp6I GTAC 2 cut(s) 239, 330
CviAII CATG 2 cut(s) 604, 756
CviQI GTAC 2 cut(s) 239, 330
DdeI CTNAG 5 cut(s) 39, 225, 285, 405, 633
DpnI GATC 3 cut(s) 612, 663, 726
DpnII GATC 3 cut(s) 610, 661, 724
EaeI YGGCCR 2 cut(s) 69, 758
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Eco130I CCWWGG 2 cut(s) 642, 755
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 621
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 807
Eco57I CTGAAG 1 cut(s) 170
Eco81I CCTNAGG 2 cut(s) 225, 633
EcoO109I RGGNCCY 1 cut(s) 252
EcoRII CCWGG 5 cut(s) 197, 325, 583, 706, 817
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 642, 755
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 2 cut(s) 642, 755
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 2 cut(s) 607, 759
FaiI YATR 9 cut(s) 258, 437, 473, 480, 605, 624, 684, 699, 757
FaqI GGGAC 1 cut(s) 191
FatI CATG 2 cut(s) 603, 755
FauI CCCGC 1 cut(s) 33
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 9 cut(s) 18, 21, 72, 136, 195, 423, 702, 870, 873
FokI GGATG 5 cut(s) 41, 479, 540, 565, 611
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 9 cut(s) 18, 21, 72, 136, 195, 423, 702, 870, 873
FspBI CTAG 2 cut(s) 545, 900
GlaI GCGC 3 cut(s) 29, 134, 823
GluI GCNGC 9 cut(s) 18, 21, 72, 136, 195, 423, 702, 870, 873
GsaI CCCAGC 1 cut(s) 910
GsuI CTGGAG 2 cut(s) 332, 837
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 6 cut(s) 23, 71, 253, 641, 733, 760
HapII CCGG 1 cut(s) 785
HhaI GCGC 3 cut(s) 30, 135, 824
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 2 cut(s) 607, 759
Hin6I GCGC 3 cut(s) 28, 133, 822
HinP1I GCGC 3 cut(s) 28, 133, 822
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 4 cut(s) 220, 464, 842, 847
HpaII CCGG 1 cut(s) 785
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 5 cut(s) 42, 189, 384, 527, 748
Hpy188III TCNNGA 4 cut(s) 58, 109, 274, 349
Hpy99I CGWCG 1 cut(s) 358
HpyAV CCTTC 2 cut(s) 309, 875
HpyCH4IV ACGT 2 cut(s) 123, 353
HpyCH4V TGCA 3 cut(s) 562, 692, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 698
HpyF3I CTNAG 5 cut(s) 39, 225, 285, 405, 633
HpySE526I ACGT 2 cut(s) 123, 353
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 2 cut(s) 607, 759
HspAI GCGC 3 cut(s) 28, 133, 822
Ksp22I TGATCA 1 cut(s) 724
KspI CCGCGG 2 cut(s) 21, 876
Kzo9I GATC 3 cut(s) 610, 661, 724
LmnI GCTCC 3 cut(s) 351, 546, 757
Lsp1109I GCAGC 4 cut(s) 181, 409, 688, 856
LweI GCATC 5 cut(s) 391, 501, 531, 555, 739
MabI ACCWGGT 1 cut(s) 706
MaeI CTAG 2 cut(s) 545, 900
MaeII ACGT 2 cut(s) 123, 353
MalI GATC 3 cut(s) 612, 663, 726
MboI GATC 3 cut(s) 610, 661, 724
MboII GAAGA 6 cut(s) 118, 607, 610, 656, 665, 671
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 2 cut(s) 92, 369
MlsI TGGCCA 1 cut(s) 760
MluCI AATT 3 cut(s) 278, 411, 861
MluNI TGGCCA 1 cut(s) 760
Mox20I TGGCCA 1 cut(s) 760
MroXI GAANNNNTTC 1 cut(s) 663
MscI TGGCCA 1 cut(s) 760
MseI TTAA 2 cut(s) 414, 591
MslI CAYNNNNRTG 2 cut(s) 59, 294
Msp20I TGGCCA 1 cut(s) 760
MspA1I CMGCKG 2 cut(s) 20, 875
MspCI CTTAAG 1 cut(s) 590
MspI CCGG 1 cut(s) 785
MspR9I CCNGG 6 cut(s) 199, 327, 585, 708, 785, 819
MvaI CCWGG 5 cut(s) 199, 327, 585, 708, 819
MvnI CGCG 3 cut(s) 20, 28, 875
MwoI GCNNNNNNNGC 1 cut(s) 698
NciI CCSGG 1 cut(s) 785
NcoI CCATGG 1 cut(s) 755
NdeII GATC 3 cut(s) 610, 661, 724
NlaIII CATG 2 cut(s) 607, 759
NlaIV GGNNCC 4 cut(s) 24, 91, 542, 574
OliI CACNNNNGTG 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 4 cut(s) 220, 464, 842, 847
PflMI CCANNNNNTGG 1 cut(s) 683
PkrI GCNGC 9 cut(s) 19, 22, 73, 137, 196, 424, 703, 871, 874
Psp6I CCWGG 5 cut(s) 197, 325, 583, 706, 817
PspFI CCCAGC 1 cut(s) 906
PspGI CCWGG 5 cut(s) 197, 325, 583, 706, 817
PspN4I GGNNCC 4 cut(s) 24, 91, 542, 574
PspPI GGNCC 3 cut(s) 22, 252, 807
PstI CTGCAG 1 cut(s) 694
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 1 cut(s) 661
RsaI GTAC 2 cut(s) 240, 331
RsaNI GTAC 2 cut(s) 239, 330
RseI CAYNNNNRTG 2 cut(s) 59, 294
SacII CCGCGG 2 cut(s) 21, 876
SaqAI TTAA 2 cut(s) 414, 591
SatI GCNGC 9 cut(s) 18, 21, 72, 136, 195, 423, 702, 870, 873
Sau3AI GATC 3 cut(s) 610, 661, 724
Sau96I GGNCC 3 cut(s) 22, 252, 807
ScrFI CCNGG 6 cut(s) 199, 327, 585, 708, 785, 819
SduI GDGCHC 2 cut(s) 92, 369
SetI ASST 7 cut(s) 36, 126, 186, 348, 356, 709, 886
SexAI ACCWGGT 1 cut(s) 706
SfaNI GCATC 5 cut(s) 391, 501, 531, 555, 739
SfcI CTRYAG 2 cut(s) 622, 690
Sfr303I CCGCGG 2 cut(s) 21, 876
SgrBI CCGCGG 2 cut(s) 21, 876
SinI GGWCC 1 cut(s) 807
SmiMI CAYNNNNRTG 2 cut(s) 59, 294
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 3 cut(s) 278, 411, 861
SsiI CCGC 9 cut(s) 15, 18, 20, 26, 72, 136, 810, 873, 875
SspMI CTAG 2 cut(s) 545, 900
StyD4I CCNGG 6 cut(s) 197, 325, 583, 706, 783, 817
StyI CCWWGG 2 cut(s) 642, 755
TaiI ACGT 2 cut(s) 126, 356
TaqI TCGA 1 cut(s) 845
TasI AATT 3 cut(s) 278, 411, 861
TatI WGTACW 1 cut(s) 238
TauI GCSGC 5 cut(s) 20, 23, 74, 138, 875
TfiI GAWTC 4 cut(s) 220, 464, 842, 847
Tru1I TTAA 2 cut(s) 414, 591
Tru9I TTAA 2 cut(s) 414, 591
TscAI CASTG 1 cut(s) 298
TseI GCWGC 4 cut(s) 194, 422, 701, 869
TspDTI ATGAA 1 cut(s) 672
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 1 cut(s) 298
Van91I CCANNNNNTGG 1 cut(s) 683
Vha464I CTTAAG 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 807
XapI RAATTY 2 cut(s) 278, 861
XcmI CCANNNNNNNNNTGG 1 cut(s) 591
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 2 cut(s) 545, 900
ZraI GACGTC 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.