Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Reverse (-)

18677641 .. 18679775

Gene Structure 2135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G193400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCGAATGCATCGCCTCCTCGTCTGCTCAGTCAGAAAGAGGCTGACATCCAGATGATGCTTGCCGCTGAGGTCCATCTGGGCACCAAAAACTGTGATTTTCAGATGGAAAGATACGTCTTCAAGCGCCGTAATGATGGGATTTACATTATCAATCTCGGAAAGACATGGGACAAGCTTCAGCTGGCTGCCAGGGTGATTGTTGCGATTGAAAATCCCAAGGATATTATTGTACAATCGGCAAGGCCCTACGGTCAAAGGGCTGTTCTGAAGTTTGCTCAGCACACCGGGGCTAATGCAATTGCTGGAAGACACACCCCAGGAACCTTTACCAATCAGCTTCAGACATCTTTCAATGAGCCCCGTCTCCTCATTCTGACTGATCCAAGAACAGATCACCAGCCAATTAAGGAAGCAGCTCTTGGAAACATTCCAACAATTGCTTTCTGTGATACTGATTCTCCCATGCGTTATGTTGATATTGGCATCCCTGCCAATAACAAGGGTAAGCACAGCATAGGATGTCTTTTCTGGATCCTAGCAAGGATGGTTTTGCAGATGCGTGGCTCCCTTCGTCCAGGGCATAAGTGGGATGTCATGGTTGATCTATTCTTCTATAGAGAGCCTGAGGAGGCCAAGGAAAAGGAGGAGGAAGAAGCTGCTACAGCGGCGGATTATGGAATTACAGATTATTCTGCGGCTGGTGATCAATGGCCTGCCCAAGTTTCTGATGCTCCTTGGCCAACCGATGCCCCTGCAGCTATCCCAGCAGCTCCTGTTGTTAGCTGGACTGCAGAACCAGTAGCTGCTGCAGATGGGTGGGGAGAGCCAGTACCGGGCCCTGCTCCTGTTGAAGGTGCTCCTACTGCAACTGGCTGGGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

296

Amino Acids

32.36

Weight (kDa)

5.31

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AciI	CCGC	4 cut(s)	66, 668, 671, 698
AclWI	GGATC	3 cut(s)	377, 529, 542
AcoI	YGGCCR	1 cut(s)	740
AcuI	CTGAAG	3 cut(s)	164, 290, 326
AfaI	GTAC	2 cut(s)	234, 834
AfiI	CCNNNNNNNGG	2 cut(s)	836, 854
AgsI	TTSAA	4 cut(s)	124, 212, 355, 854
AjnI	CCWGG	3 cut(s)	191, 319, 577
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	9 cut(s)	178, 184, 340, 419, 659, 761, 773, 786, 806
AluI	AGCT	9 cut(s)	178, 184, 340, 419, 659, 761, 773, 786, 806
Alw21I	GWGCWC	1 cut(s)	862
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	3 cut(s)	377, 529, 542
AlwNI	CAGNNNCTG	2 cut(s)	776, 806
AoxI	GGCC	5 cut(s)	245, 633, 713, 740, 838
ApaI	GGGCCC	1 cut(s)	842
ApeKI	GCWGC	7 cut(s)	188, 416, 659, 758, 770, 806, 809
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	4 cut(s)	73, 246, 838, 839
AsuC2I	CCSGG	2 cut(s)	289, 837
AsuHPI	GGTGA	3 cut(s)	208, 389, 716
AvaII	GGWCC	1 cut(s)	73
AxyI	CCTNAGG	1 cut(s)	627
BaeGI	GKGCMC	2 cut(s)	86, 842
BalI	TGGCCA	1 cut(s)	742
BamHI	GGATCC	1 cut(s)	534
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	363, 842
BbsI	GAAGAC	2 cut(s)	112, 316
Bbv12I	GWGCWC	1 cut(s)	862
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	7 cut(s)	175, 428, 646, 770, 782, 793, 796
BccI	CCATC	5 cut(s)	84, 100, 131, 541, 809
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	737, 771
BciT130I	CCWGG	3 cut(s)	193, 321, 579
BclI	TGATCA	1 cut(s)	706
BcnI	CCSGG	2 cut(s)	289, 837
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	539
BfmI	CTRYAG	5 cut(s)	616, 663, 756, 792, 810
BfoI	RGCGCY	1 cut(s)	130
BlpI	GCTNAGC	1 cut(s)	279
Bme1390I	CCNGG	5 cut(s)	193, 289, 321, 579, 837
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	4 cut(s)	73, 246, 838, 839
BmiI	GGNNCC	5 cut(s)	85, 325, 536, 568, 840
BmrFI	CCNGG	5 cut(s)	193, 289, 321, 579, 837
BmsI	GCATC	6 cut(s)	20, 48, 495, 549, 721, 739
BpiI	GAAGAC	2 cut(s)	112, 316
Bpu10I	CCTNAGC	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuMI	CCSGG	2 cut(s)	289, 837
BsaJI	CCNNGG	7 cut(s)	192, 219, 288, 319, 578, 636, 737
BsaXI	ACNNNNNCTCC	4 cut(s)	445, 475, 816, 846
Bsc4I	CCNNNNNNNGG	2 cut(s)	836, 854
Bse1I	ACTGG	3 cut(s)	800, 830, 877
Bse21I	CCTNAGG	1 cut(s)	627
BseBI	CCWGG	3 cut(s)	193, 321, 579
BseDI	CCNNGG	7 cut(s)	192, 219, 288, 319, 578, 636, 737
BseGI	GGATG	5 cut(s)	48, 486, 527, 552, 598
BseLI	CCNNNNNNNGG	2 cut(s)	836, 854
BseMII	CTCAG	4 cut(s)	43, 60, 293, 618
BseNI	ACTGG	3 cut(s)	800, 830, 877
BseRI	GAGGAG	4 cut(s)	9, 359, 644, 662
BseSI	GKGCMC	2 cut(s)	86, 842
BseXI	GCAGC	7 cut(s)	175, 428, 646, 770, 782, 793, 796
BseYI	CCCAGC	2 cut(s)	766, 876
BshFI	GGCC	5 cut(s)	247, 635, 715, 742, 840
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	862
BsiSI	CCGG	2 cut(s)	288, 836
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	836, 854
BsmAI	GTCTC	1 cut(s)	371
BsmBI	CGTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	5 cut(s)	247, 635, 715, 742, 840
Bsp120I	GGGCCC	1 cut(s)	838
Bsp1286I	GDGCHC	4 cut(s)	86, 363, 842, 862
Bsp1407I	TGTACA	1 cut(s)	232
Bsp143I	GATC	5 cut(s)	382, 394, 534, 604, 706
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	4 cut(s)	66, 668, 671, 698
BspANI	GGCC	5 cut(s)	247, 635, 715, 742, 840
BspCNI	CTCAG	4 cut(s)	42, 61, 292, 619
BspLI	GGNNCC	5 cut(s)	85, 325, 536, 568, 840
BspMAI	CTGCAG	3 cut(s)	760, 796, 814
BspPI	GGATC	3 cut(s)	377, 529, 542
BspT107I	GGYRCC	1 cut(s)	83
BsrGI	TGTACA	1 cut(s)	232
BsrI	ACTGG	3 cut(s)	800, 830, 877
BssECI	CCNNGG	7 cut(s)	192, 219, 288, 319, 578, 636, 737
BssMI	GATC	5 cut(s)	382, 394, 534, 604, 706
BssT1I	CCWWGG	3 cut(s)	219, 636, 737
Bst2UI	CCWGG	3 cut(s)	193, 321, 579
Bst4CI	ACNGT	2 cut(s)	95, 254
BstAUI	TGTACA	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	63, 186, 717
BstDEI	CTNAG	4 cut(s)	29, 69, 279, 627
BstENI	CCTNNNNNAGG	1 cut(s)	852
BstF5I	GGATG	5 cut(s)	48, 486, 527, 552, 598
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	5 cut(s)	385, 397, 537, 607, 709
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	5 cut(s)	382, 394, 534, 604, 706
BstMWI	GCNNNNNNNGC	5 cut(s)	665, 668, 758, 767, 866
BstNI	CCWGG	3 cut(s)	193, 321, 579
BstSCI	CCNGG	5 cut(s)	191, 287, 319, 577, 835
BstSFI	CTRYAG	5 cut(s)	616, 663, 756, 792, 810
BstSLI	GKGCMC	2 cut(s)	86, 842
BstV1I	GCAGC	7 cut(s)	175, 428, 646, 770, 782, 793, 796
BstV2I	GAAGAC	2 cut(s)	112, 316
BstX2I	RGATCY	1 cut(s)	534
BstYI	RGATCY	1 cut(s)	534
Bsu36I	CCTNAGG	1 cut(s)	627
BsuRI	GGCC	5 cut(s)	247, 635, 715, 742, 840
BtsCI	GGATG	5 cut(s)	48, 486, 527, 552, 598
Cac8I	GCNNGC	3 cut(s)	63, 186, 717
CaiI	CAGNNNCTG	2 cut(s)	776, 806
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	4 cut(s)	73, 246, 838, 839
Csp6I	GTAC	2 cut(s)	233, 833
CviAII	CATG	3 cut(s)	168, 466, 598
CviQI	GTAC	2 cut(s)	233, 833
DdeI	CTNAG	4 cut(s)	29, 69, 279, 627
DpnI	GATC	5 cut(s)	384, 396, 536, 606, 708
DpnII	GATC	5 cut(s)	382, 394, 534, 604, 706
EaeI	YGGCCR	1 cut(s)	740
EciI	GGCGGA	1 cut(s)	686
Eco130I	CCWWGG	3 cut(s)	219, 636, 737
Eco24I	GRGCYC	2 cut(s)	363, 842
Eco47I	GGWCC	1 cut(s)	73
Eco57I	CTGAAG	3 cut(s)	164, 290, 326
Eco81I	CCTNAGG	1 cut(s)	627
EcoNI	CCTNNNNNAGG	1 cut(s)	852
EcoO109I	RGGNCCY	2 cut(s)	246, 839
EcoRII	CCWGG	3 cut(s)	191, 319, 577
EcoT14I	CCWWGG	3 cut(s)	219, 636, 737
EcoT22I	ATGCAT	1 cut(s)	13
EcoT38I	GRGCYC	2 cut(s)	363, 842
ErhI	CCWWGG	3 cut(s)	219, 636, 737
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	3 cut(s)	171, 469, 601
FaiI	YATR	9 cut(s)	169, 467, 474, 518, 585, 599, 618, 678, 886
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	3 cut(s)	167, 465, 597
FbaI	TGATCA	1 cut(s)	706
FokI	GGATG	5 cut(s)	35, 473, 534, 559, 605
FriOI	GRGCYC	2 cut(s)	363, 842
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	1 cut(s)	128
GsaI	CCCAGC	2 cut(s)	770, 880
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	5 cut(s)	247, 635, 715, 742, 840
HapII	CCGG	2 cut(s)	288, 836
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	171, 469, 601
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	2 cut(s)	288, 836
HphI	GGTGA	3 cut(s)	208, 389, 716
Hpy188I	TCNGA	7 cut(s)	36, 105, 161, 270, 345, 378, 730
Hpy188III	TCNNGA	2 cut(s)	52, 532
HpyAV	CCTTC	2 cut(s)	581, 848
HpyCH4III	ACNGT	2 cut(s)	95, 254
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	7 cut(s)	11, 299, 556, 758, 794, 812, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	665, 668, 758, 767, 866
HpyF3I	CTNAG	4 cut(s)	29, 69, 279, 627
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	171, 469, 601
HspAI	GCGC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	5 cut(s)	382, 394, 534, 604, 706
LmnI	GCTCC	5 cut(s)	572, 739, 778, 850, 865
Lsp1109I	GCAGC	7 cut(s)	175, 428, 646, 770, 782, 793, 796
LweI	GCATC	6 cut(s)	20, 48, 495, 549, 721, 739
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	1 cut(s)	117
MalI	GATC	5 cut(s)	384, 396, 536, 606, 708
MboI	GATC	5 cut(s)	382, 394, 534, 604, 706
MboII	GAAGA	4 cut(s)	112, 321, 604, 665
MfeI	CAATTG	2 cut(s)	300, 438
MflI	RGATCY	1 cut(s)	534
MhlI	GDGCHC	4 cut(s)	86, 363, 842, 862
MlsI	TGGCCA	1 cut(s)	742
MluCI	AATT	4 cut(s)	300, 405, 438, 681
MluNI	TGGCCA	1 cut(s)	742
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	9 cut(s)	27, 30, 34, 64, 380, 622, 625, 640, 643
Mox20I	TGGCCA	1 cut(s)	742
Mph1103I	ATGCAT	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	742
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	742
MspA1I	CMGCKG	3 cut(s)	68, 184, 668
MspI	CCGG	2 cut(s)	288, 836
MspR9I	CCNGG	5 cut(s)	193, 289, 321, 579, 837
MunI	CAATTG	2 cut(s)	300, 438
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	3 cut(s)	193, 321, 579
MwoI	GCNNNNNNNGC	5 cut(s)	665, 668, 758, 767, 866
NciI	CCSGG	2 cut(s)	289, 837
NdeII	GATC	5 cut(s)	382, 394, 534, 604, 706
NlaIII	CATG	3 cut(s)	171, 469, 601
NlaIV	GGNNCC	5 cut(s)	85, 325, 536, 568, 840
NsiI	ATGCAT	1 cut(s)	13
PctI	GAATGC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	458
Psp6I	CCWGG	3 cut(s)	191, 319, 577
PspFI	CCCAGC	2 cut(s)	766, 876
PspGI	CCWGG	3 cut(s)	191, 319, 577
PspN4I	GGNNCC	5 cut(s)	85, 325, 536, 568, 840
PspOMI	GGGCCC	1 cut(s)	838
PspPI	GGNCC	4 cut(s)	73, 246, 838, 839
PstI	CTGCAG	3 cut(s)	760, 796, 814
PstNI	CAGNNNCTG	2 cut(s)	776, 806
PsuI	RGATCY	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	184
RsaI	GTAC	2 cut(s)	234, 834
RsaNI	GTAC	2 cut(s)	233, 833
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	408
Sau3AI	GATC	5 cut(s)	382, 394, 534, 604, 706
Sau96I	GGNCC	4 cut(s)	73, 246, 838, 839
ScrFI	CCNGG	5 cut(s)	193, 289, 321, 579, 837
SduI	GDGCHC	4 cut(s)	86, 363, 842, 862
SfaNI	GCATC	6 cut(s)	20, 48, 495, 549, 721, 739
SfcI	CTRYAG	5 cut(s)	616, 663, 756, 792, 810
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	4 cut(s)	300, 405, 438, 681
SsiI	CCGC	4 cut(s)	66, 668, 671, 698
SspMI	CTAG	1 cut(s)	539
StyD4I	CCNGG	5 cut(s)	191, 287, 319, 577, 835
StyI	CCWWGG	3 cut(s)	219, 636, 737
TaaI	ACNGT	2 cut(s)	95, 254
TaiI	ACGT	1 cut(s)	120
TasI	AATT	4 cut(s)	300, 405, 438, 681
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	3 cut(s)	68, 671, 701
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TseI	GCWGC	7 cut(s)	188, 416, 659, 758, 770, 806, 809
VpaK11BI	GGWCC	1 cut(s)	73
XagI	CCTNNNNNAGG	1 cut(s)	852
XcmI	CCANNNNNNNNNTGG	1 cut(s)	585
XspI	CTAG	1 cut(s)	539
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.