Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Forward (+)

27966776 .. 27968959

Gene Structure 2184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCGACCACAACTGCCGCTCCTCCGCGTCAGCTCTCCGATAAGGAGGCCGACATCCAGATGATGTTGGCCGCCGAAGTCCACCTCGGCACCAAAAACTGCGATTTTCAGATGGAGCGTTACGTCTTCAAGCGCCGCAACGATGGGATTTATATTATCAATCTTGGTAAGACATGGGAGAAACTCCAGCTAGCTGCTAGGGTTATTGTGGCTATTGAGAATCCCAAGGACATTATCGTCCAGTCTGCTAGGCCATATGGGCAGAGGGCTGTCCTCAAGTTTGCTCAGCACACTGGGGTTAATGCCATTGCTGGAAGGCACACTCCCGGTACCTTCACTAACCAGCTTCAGACTTCCTTCAACGAGCCCCGTCTCCTCATCTTGACTGACCCAAGAACCGACCACCAGCCGATTAAGGAAGCTGCTCTTGGGAACATTCCCACCATTGCTTTCTGCGATACTGATTCGCCCATGCGGTATGTTGACATTGGCATTCCGGCCAACAACAAGGGGAAGCACAGCATTGGATGTCTGTTCTGGTTGCTGGCAAGGATGGTTTTGCAAATGCGCGGTTCTCTGAGGCCAGGACATAAGTGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAACCTGAGGAGGCCAAAGAACAAGAGGAGGAAGAAGCGGTGCAAGCTCCAGAGTACCTTGAATATTCTGGTGGTCTTGGTGGCGATCAGTGGCCAACCCAAGGTGCTGAGGCTTCTTGGTCTGCTGATGCGGCCCCTGCTATCCCAGCAATTCCTGCTGCGGGCTGGACTGGTGAACCAGGTGCGACACAAGAAGGTTGGGATGCTGCTCCAGCACCAGTGGTTCCTGCTCCTATCGTTGAGGGTGGTGCTCCCGTAGTGGCCAGTGGTTGGGATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

303

Amino Acids

33.06

Weight (kDa)

5.14

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	22 - 115	1.7e-12	Ribosomal protein S2
Ribosomal_S2	PF00318	121 - 186	1.7e-11	Ribosomal protein S2
40S_SA_C	PF16122	206 - 281	5.4e-06	40S ribosomal protein SA C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
Acc65I	GGTACC	1 cut(s)	329
AccB1I	GGYRCC	2 cut(s)	89, 329
AccB7I	CCANNNNNTGG	1 cut(s)	897
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	2 cut(s)	28, 570
AciI	CCGC	9 cut(s)	18, 26, 72, 136, 475, 570, 665, 758, 788
AcoI	YGGCCR	4 cut(s)	69, 498, 719, 888
AcuI	CTGAAG	1 cut(s)	332
AfaI	GTAC	2 cut(s)	331, 683
AfiI	CCNNNNNNNGG	3 cut(s)	728, 788, 897
AgsI	TTSAA	3 cut(s)	130, 361, 689
AjnI	CCWGG	2 cut(s)	583, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	6 cut(s)	34, 190, 194, 346, 422, 674
AluI	AGCT	6 cut(s)	34, 190, 194, 346, 422, 674
Alw21I	GWGCWC	1 cut(s)	880
Alw26I	GTCTC	1 cut(s)	377
AoxI	GGCC	9 cut(s)	48, 69, 251, 498, 581, 639, 719, 759, 888
ApeKI	GCWGC	4 cut(s)	194, 422, 785, 833
Asp718I	GGTACC	1 cut(s)	329
AspLEI	GCGC	2 cut(s)	135, 570
AspS9I	GGNCC	1 cut(s)	760
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	812
AsuNHI	GCTAGC	1 cut(s)	190
AxyI	CCTNAGG	1 cut(s)	633
BalI	TGGCCA	2 cut(s)	721, 890
BanI	GGYRCC	2 cut(s)	89, 329
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	880
BbvCI	CCTCAGC	1 cut(s)	735
BbvI	GCAGC	4 cut(s)	181, 409, 772, 820
BccI	CCATC	3 cut(s)	106, 137, 547
BciT130I	CCWGG	2 cut(s)	585, 807
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	3 cut(s)	191, 198, 249
BfmI	CTRYAG	1 cut(s)	622
BfoI	RGCGCY	1 cut(s)	136
BglI	GCCNNNNNGGC	1 cut(s)	259
BisI	GCNGC	8 cut(s)	18, 72, 136, 195, 423, 759, 786, 834
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	8 cut(s)	19, 73, 137, 196, 424, 760, 787, 835
Bme1390I	CCNGG	3 cut(s)	327, 585, 807
BmgT120I	GGNCC	1 cut(s)	760
BmiI	GGNNCC	4 cut(s)	91, 331, 762, 852
BmrFI	CCNGG	3 cut(s)	327, 585, 807
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	2 cut(s)	745, 820
BmtI	GCTAGC	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	3 cut(s)	170, 660, 822
Bpu10I	CCTNAGC	1 cut(s)	735
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	85, 225, 727
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	3 cut(s)	728, 788, 897
Bse1I	ACTGG	5 cut(s)	241, 298, 802, 845, 891
Bse21I	CCTNAGG	1 cut(s)	633
Bse3DI	GCAATG	2 cut(s)	306, 444
BseBI	CCWGG	2 cut(s)	585, 807
BseDI	CCNNGG	3 cut(s)	85, 225, 727
BseGI	GGATG	5 cut(s)	54, 533, 558, 604, 835
BseLI	CCNNNNNNNGG	3 cut(s)	728, 788, 897
BseMI	GCAATG	2 cut(s)	306, 444
BseMII	CTCAG	4 cut(s)	299, 569, 624, 726
BseNI	ACTGG	5 cut(s)	241, 298, 802, 845, 891
BseRI	GAGGAG	4 cut(s)	12, 365, 650, 668
BseXI	GCAGC	4 cut(s)	181, 409, 772, 820
BseYI	CCCAGC	1 cut(s)	772
Bsh1236I	CGCG	2 cut(s)	28, 570
BshFI	GGCC	9 cut(s)	50, 71, 253, 500, 583, 641, 721, 761, 890
BshNI	GGYRCC	2 cut(s)	89, 329
BsiHKAI	GWGCWC	1 cut(s)	880
BsiSI	CCGG	2 cut(s)	327, 497
BslI	CCNNNNNNNGG	3 cut(s)	728, 788, 897
BsmAI	GTCTC	1 cut(s)	377
BsmBI	CGTCTC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	9 cut(s)	50, 71, 253, 500, 583, 641, 721, 761, 890
Bsp1286I	GDGCHC	2 cut(s)	369, 880
Bsp143I	GATC	1 cut(s)	712
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	9 cut(s)	18, 26, 72, 136, 475, 570, 665, 758, 788
BspANI	GGCC	9 cut(s)	50, 71, 253, 500, 583, 641, 721, 761, 890
BspCNI	CTCAG	4 cut(s)	298, 570, 625, 727
BspFNI	CGCG	2 cut(s)	28, 570
BspLI	GGNNCC	4 cut(s)	91, 331, 762, 852
BspOI	GCTAGC	1 cut(s)	194
BspT107I	GGYRCC	2 cut(s)	89, 329
BsrBI	CCGCTC	1 cut(s)	20
BsrDI	GCAATG	2 cut(s)	306, 444
BsrI	ACTGG	5 cut(s)	241, 298, 802, 845, 891
BssECI	CCNNGG	3 cut(s)	85, 225, 727
BssMI	GATC	1 cut(s)	712
BssT1I	CCWWGG	2 cut(s)	225, 727
Bst2UI	CCWGG	2 cut(s)	585, 807
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	4 cut(s)	192, 546, 672, 790
BstDEI	CTNAG	4 cut(s)	285, 578, 633, 735
BstF5I	GGATG	5 cut(s)	54, 533, 558, 604, 835
BstFNI	CGCG	2 cut(s)	28, 570
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	135, 570
BstKTI	GATC	1 cut(s)	715
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	1 cut(s)	712
BstMWI	GCNNNNNNNGC	7 cut(s)	259, 671, 758, 764, 773, 782, 839
BstNI	CCWGG	2 cut(s)	585, 807
BstSCI	CCNGG	3 cut(s)	325, 583, 805
BstSFI	CTRYAG	1 cut(s)	622
BstUI	CGCG	2 cut(s)	28, 570
BstV1I	GCAGC	4 cut(s)	181, 409, 772, 820
BstV2I	GAAGAC	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	9 cut(s)	50, 71, 253, 500, 583, 641, 721, 761, 890
BtsCI	GGATG	5 cut(s)	54, 533, 558, 604, 835
BtsIMutI	CAGTG	4 cut(s)	291, 722, 852, 898
Cac8I	GCNNGC	4 cut(s)	192, 546, 672, 790
CfoI	GCGC	2 cut(s)	135, 570
Cfr13I	GGNCC	1 cut(s)	760
CseI	GACGC	1 cut(s)	17
CsiI	ACCWGGT	1 cut(s)	805
Csp6I	GTAC	2 cut(s)	330, 682
CviAII	CATG	3 cut(s)	174, 472, 604
CviQI	GTAC	2 cut(s)	330, 682
DdeI	CTNAG	4 cut(s)	285, 578, 633, 735
DpnI	GATC	1 cut(s)	714
DpnII	GATC	1 cut(s)	712
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	4 cut(s)	69, 498, 719, 888
Eco130I	CCWWGG	2 cut(s)	225, 727
Eco24I	GRGCYC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	332
Eco81I	CCTNAGG	1 cut(s)	633
EcoRII	CCWGG	2 cut(s)	583, 805
EcoT14I	CCWWGG	2 cut(s)	225, 727
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	225, 727
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	3 cut(s)	177, 475, 607
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	3 cut(s)	173, 471, 603
FauI	CCCGC	1 cut(s)	781
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	8 cut(s)	18, 72, 136, 195, 423, 759, 786, 834
FokI	GGATG	5 cut(s)	41, 540, 565, 611, 842
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	8 cut(s)	18, 72, 136, 195, 423, 759, 786, 834
FspBI	CTAG	3 cut(s)	191, 198, 249
GlaI	GCGC	2 cut(s)	134, 569
GluI	GCNGC	8 cut(s)	18, 72, 136, 195, 423, 759, 786, 834
GsaI	CCCAGC	1 cut(s)	776
GsuI	CTGGAG	3 cut(s)	170, 660, 822
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	9 cut(s)	50, 71, 253, 500, 583, 641, 721, 761, 890
HapII	CCGG	2 cut(s)	327, 497
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	2 cut(s)	135, 570
Hin1II	CATG	3 cut(s)	177, 475, 607
Hin6I	GCGC	2 cut(s)	133, 568
HinP1I	GCGC	2 cut(s)	133, 568
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	2 cut(s)	220, 464
HpaII	CCGG	2 cut(s)	327, 497
HphI	GGTGA	1 cut(s)	812
Hpy166II	GTNNAC	3 cut(s)	82, 484, 803
Hpy188I	TCNGA	4 cut(s)	40, 111, 351, 579
Hpy188III	TCNNGA	3 cut(s)	58, 382, 677
Hpy8I	GTNNAC	3 cut(s)	82, 484, 803
HpyAV	CCTTC	4 cut(s)	309, 343, 367, 815
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	562, 670
HpyF10VI	GCNNNNNNNGC	7 cut(s)	259, 671, 758, 764, 773, 782, 839
HpyF3I	CTNAG	4 cut(s)	285, 578, 633, 735
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	177, 475, 607
HspAI	GCGC	2 cut(s)	133, 568
KpnI	GGTACC	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	712
LmnI	GCTCC	6 cut(s)	25, 115, 679, 841, 862, 883
Lsp1109I	GCAGC	4 cut(s)	181, 409, 772, 820
LweI	GCATC	2 cut(s)	745, 820
MabI	ACCWGGT	1 cut(s)	805
MaeI	CTAG	3 cut(s)	191, 198, 249
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	714
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	1 cut(s)	712
MboII	GAAGA	3 cut(s)	118, 610, 671
MhlI	GDGCHC	2 cut(s)	369, 880
MlsI	TGGCCA	2 cut(s)	721, 890
MluCI	AATT	1 cut(s)	777
MluNI	TGGCCA	2 cut(s)	721, 890
Mox20I	TGGCCA	2 cut(s)	721, 890
MscI	TGGCCA	2 cut(s)	721, 890
MseI	TTAA	2 cut(s)	300, 414
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	2 cut(s)	721, 890
MspI	CCGG	2 cut(s)	327, 497
MspR9I	CCNGG	3 cut(s)	327, 585, 807
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	585, 807
MvnI	CGCG	2 cut(s)	28, 570
MwoI	GCNNNNNNNGC	7 cut(s)	259, 671, 758, 764, 773, 782, 839
NciI	CCSGG	1 cut(s)	327
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	1 cut(s)	712
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	3 cut(s)	177, 475, 607
NlaIV	GGNNCC	4 cut(s)	91, 331, 762, 852
NmeAIII	GCCGAG	1 cut(s)	66
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	220, 464
PflMI	CCANNNNNTGG	1 cut(s)	897
PkrI	GCNGC	8 cut(s)	19, 73, 137, 196, 424, 760, 787, 835
Psp6I	CCWGG	2 cut(s)	583, 805
PspFI	CCCAGC	1 cut(s)	772
PspGI	CCWGG	2 cut(s)	583, 805
PspN4I	GGNNCC	4 cut(s)	91, 331, 762, 852
PspPI	GGNCC	1 cut(s)	760
RsaI	GTAC	2 cut(s)	331, 683
RsaNI	GTAC	2 cut(s)	330, 682
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	300, 414
SatI	GCNGC	8 cut(s)	18, 72, 136, 195, 423, 759, 786, 834
Sau3AI	GATC	1 cut(s)	712
Sau96I	GGNCC	1 cut(s)	760
ScrFI	CCNGG	3 cut(s)	327, 585, 807
SduI	GDGCHC	2 cut(s)	369, 880
SexAI	ACCWGGT	1 cut(s)	805
SfaNI	GCATC	2 cut(s)	745, 820
SfcI	CTRYAG	1 cut(s)	622
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	777
SsiI	CCGC	9 cut(s)	18, 26, 72, 136, 475, 570, 665, 758, 788
SspI	AATATT	1 cut(s)	692
SspMI	CTAG	3 cut(s)	191, 198, 249
StyD4I	CCNGG	3 cut(s)	325, 583, 805
StyI	CCWWGG	2 cut(s)	225, 727
TaiI	ACGT	1 cut(s)	126
TasI	AATT	1 cut(s)	777
TauI	GCSGC	4 cut(s)	20, 74, 138, 761
TfiI	GAWTC	2 cut(s)	220, 464
Tru1I	TTAA	2 cut(s)	300, 414
Tru9I	TTAA	2 cut(s)	300, 414
TscAI	CASTG	4 cut(s)	298, 722, 852, 898
TseI	GCWGC	4 cut(s)	194, 422, 785, 833
TspRI	CASTG	4 cut(s)	298, 722, 852, 898
Van91I	CCANNNNNTGG	1 cut(s)	897
XcmI	CCANNNNNNNNNTGG	1 cut(s)	591
XspI	CTAG	3 cut(s)	191, 198, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.