Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Forward (+)

18902278 .. 18904275

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGACCACCACCGCCGCGGCTCCGCGTCAGCTCTCTCAGAAGGAGGCTGACATCCAGATGATGTTGGCCGCCGAAGTCCACCTCGGTACCAAAAACTGTGATTTCCAGATGGAAAGATACGTCTTCAAGCGCCGCAATGATGGGATTTACATTATCAATCTTGGAAAAACTTGGGACAAGCTTCAGATGGCTGCCAGGGTGATTGTTGCGATTGAGAATCCCAAGGATATCATTGTACAATCAGCAAGGCCCTATGGTCAGAGGGCTGTCCTGAAATTCGCTCAACACACTGGCGCTAATGCTATTGCTGGAAGACACACGCCAGGTACTTTCACAAATCAGCTCCAGACGTCGTTCAATGAGCCCCGTCTCCTCATTCTGACTGACCCACGAACTGACGCTCAGCCAATTAAGGAGGCTGCTTTGGGAAACATACCAACCATTGCTTTCTGCGATACTGATTCCCCTATGCGTTATGTTGATATTGGCATCCCTGCCAATAACAAGGGTAAACACAGCATCGGATGTCTTTTCTGGCTCCTAGCAAGGATGGTTTTACAGATGCGTGGTTCTCTCCTTCCTGGGCATAAGTGGGATGTCATGGTTGATCTTTTCTTCTATAGAGACCCTGAGGAGGCCAAGGAAAAGGAAGATGAAGATGTTCCTCAAATCCCAGATTATGGAACTGCAGATTATGTTGCACCTGTTATTGGCGGGGCTGATCAGTGGCCTACCCAAGTTTCTGATGCTCCTTGGCCAACAGATGCCACTACAAGTGTCCCGGCAGCTCCTGTTGTTGGCTGGACCGCAGAACCAGGCGCAGTAGGGGGAGAGTGGGATTCGATTCCTCCAACACAAATCCCTGCTTCCGCGGTGGAAGGTGTTGTTCCTCCTCCTAGTGGCTGGGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

306

Amino Acids

33.42

Weight (kDa)

5.09

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	356
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccII	CGCG	3 cut(s)	20, 28, 875
AcoI	YGGCCR	2 cut(s)	69, 758
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	3 cut(s)	91, 240, 331
AfiI	CCNNNNNNNGG	5 cut(s)	637, 683, 713, 800, 902
AgsI	TTSAA	2 cut(s)	130, 361
AjnI	CCWGG	4 cut(s)	197, 325, 583, 817
AluBI	AGCT	4 cut(s)	34, 184, 346, 791
AluI	AGCT	4 cut(s)	34, 184, 346, 791
Alw26I	GTCTC	2 cut(s)	377, 621
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	5 cut(s)	69, 251, 639, 731, 758
ApeKI	GCWGC	3 cut(s)	194, 422, 788
ApoI	RAATTY	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	663
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	3 cut(s)	135, 299, 824
AspS9I	GGNCC	2 cut(s)	252, 807
AsuC2I	CCSGG	1 cut(s)	785
AsuHPI	GGTGA	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	807
AxyI	CCTNAGG	1 cut(s)	633
BaeI	ACNNNNGTAYC	2 cut(s)	73, 106
BalI	TGGCCA	1 cut(s)	760
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	118, 322
BbvI	GCAGC	3 cut(s)	181, 409, 800
BccI	CCATC	4 cut(s)	106, 137, 184, 547
BciT130I	CCWGG	4 cut(s)	199, 327, 585, 819
BclI	TGATCA	1 cut(s)	724
BcnI	CCSGG	1 cut(s)	785
BcoDI	GTCTC	2 cut(s)	377, 621
BfaI	CTAG	2 cut(s)	545, 900
BfmI	CTRYAG	2 cut(s)	622, 690
BfoI	RGCGCY	2 cut(s)	136, 300
BisI	GCNGC	7 cut(s)	18, 21, 72, 136, 195, 423, 789
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	7 cut(s)	19, 22, 73, 137, 196, 424, 790
Bme1390I	CCNGG	5 cut(s)	199, 327, 585, 785, 819
Bme18I	GGWCC	1 cut(s)	807
BmgT120I	GGNCC	2 cut(s)	252, 807
BmiI	GGNNCC	3 cut(s)	24, 91, 542
BmrFI	CCNGG	5 cut(s)	199, 327, 585, 785, 819
BmsI	GCATC	5 cut(s)	501, 531, 555, 739, 757
BpiI	GAAGAC	2 cut(s)	118, 322
BpmI	CTGGAG	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	785
BsaHI	GRCGYC	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	621
BsaJI	CCNNGG	8 cut(s)	18, 85, 198, 225, 584, 642, 755, 873
Bsc4I	CCNNNNNNNGG	5 cut(s)	637, 683, 713, 800, 902
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	1 cut(s)	633
Bse3DI	GCAATG	2 cut(s)	145, 444
BseBI	CCWGG	4 cut(s)	199, 327, 585, 819
BseDI	CCNNGG	8 cut(s)	18, 85, 198, 225, 584, 642, 755, 873
BseGI	GGATG	5 cut(s)	54, 492, 533, 558, 604
BseLI	CCNNNNNNNGG	5 cut(s)	637, 683, 713, 800, 902
BseMI	GCAATG	2 cut(s)	145, 444
BseMII	CTCAG	3 cut(s)	53, 419, 624
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	3 cut(s)	365, 650, 885
BseXI	GCAGC	3 cut(s)	181, 409, 800
BseYI	CCCAGC	1 cut(s)	906
Bsh1236I	CGCG	3 cut(s)	20, 28, 875
BshFI	GGCC	5 cut(s)	71, 253, 641, 733, 760
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	785
BslFI	GGGAC	2 cut(s)	191, 767
BslI	CCNNNNNNNGG	5 cut(s)	637, 683, 713, 800, 902
BsmAI	GTCTC	2 cut(s)	377, 621
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	2 cut(s)	191, 767
BsnI	GGCC	5 cut(s)	71, 253, 641, 733, 760
Bso31I	GGTCTC	1 cut(s)	621
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	610, 724
Bsp1720I	GCTNAGC	1 cut(s)	405
BspANI	GGCC	5 cut(s)	71, 253, 641, 733, 760
BspCNI	CTCAG	3 cut(s)	52, 418, 625
BspFNI	CGCG	3 cut(s)	20, 28, 875
BspLI	GGNNCC	3 cut(s)	24, 91, 542
BspMAI	CTGCAG	1 cut(s)	694
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	621
BsrDI	GCAATG	2 cut(s)	145, 444
BsrGI	TGTACA	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	8 cut(s)	18, 85, 198, 225, 584, 642, 755, 873
BssMI	GATC	2 cut(s)	610, 724
BssNI	GRCGYC	1 cut(s)	353
BssT1I	CCWWGG	3 cut(s)	225, 642, 755
Bst2UI	CCWGG	4 cut(s)	199, 327, 585, 819
Bst4CI	ACNGT	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	238
BstDEI	CTNAG	3 cut(s)	39, 405, 633
BstDSI	CCRYGG	2 cut(s)	18, 873
BstF5I	GGATG	5 cut(s)	54, 492, 533, 558, 604
BstFNI	CGCG	3 cut(s)	20, 28, 875
BstH2I	RGCGCY	2 cut(s)	136, 300
BstHHI	GCGC	3 cut(s)	135, 299, 824
BstKTI	GATC	2 cut(s)	613, 727
BstMAI	GTCTC	2 cut(s)	377, 621
BstMBI	GATC	2 cut(s)	610, 724
BstNI	CCWGG	4 cut(s)	199, 327, 585, 819
BstSCI	CCNGG	5 cut(s)	197, 325, 583, 783, 817
BstSFI	CTRYAG	2 cut(s)	622, 690
BstUI	CGCG	3 cut(s)	20, 28, 875
BstV1I	GCAGC	3 cut(s)	181, 409, 800
BstV2I	GAAGAC	2 cut(s)	118, 322
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	5 cut(s)	71, 253, 641, 733, 760
BtgI	CCRYGG	2 cut(s)	18, 873
BtsCI	GGATG	5 cut(s)	54, 492, 533, 558, 604
BtsIMutI	CAGTG	2 cut(s)	291, 734
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	3 cut(s)	135, 299, 824
Cfr13I	GGNCC	2 cut(s)	252, 807
Cfr42I	CCGCGG	2 cut(s)	21, 876
CseI	GACGC	2 cut(s)	17, 410
Csp6I	GTAC	3 cut(s)	90, 239, 330
CviAII	CATG	1 cut(s)	604
CviQI	GTAC	3 cut(s)	90, 239, 330
DdeI	CTNAG	3 cut(s)	39, 405, 633
DpnI	GATC	2 cut(s)	612, 726
DpnII	GATC	2 cut(s)	610, 724
EaeI	YGGCCR	2 cut(s)	69, 758
Eco130I	CCWWGG	3 cut(s)	225, 642, 755
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	621
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	807
Eco57I	CTGAAG	1 cut(s)	170
Eco81I	CCTNAGG	1 cut(s)	633
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	4 cut(s)	197, 325, 583, 817
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	3 cut(s)	225, 642, 755
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	3 cut(s)	225, 642, 755
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	1 cut(s)	607
FaqI	GGGAC	2 cut(s)	191, 767
FatI	CATG	1 cut(s)	603
FauI	CCCGC	1 cut(s)	710
FbaI	TGATCA	1 cut(s)	724
Fnu4HI	GCNGC	7 cut(s)	18, 21, 72, 136, 195, 423, 789
FokI	GGATG	5 cut(s)	41, 479, 540, 565, 611
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	7 cut(s)	18, 21, 72, 136, 195, 423, 789
FspBI	CTAG	2 cut(s)	545, 900
GlaI	GCGC	3 cut(s)	134, 298, 823
GluI	GCNGC	7 cut(s)	18, 21, 72, 136, 195, 423, 789
GsaI	CCCAGC	1 cut(s)	910
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	2 cut(s)	136, 300
HaeIII	GGCC	5 cut(s)	71, 253, 641, 733, 760
HapII	CCGG	1 cut(s)	785
HgaI	GACGC	2 cut(s)	17, 410
HhaI	GCGC	3 cut(s)	135, 299, 824
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	607
Hin6I	GCGC	3 cut(s)	133, 297, 822
HinP1I	GCGC	3 cut(s)	133, 297, 822
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	4 cut(s)	220, 464, 842, 847
HpaII	CCGG	1 cut(s)	785
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	82, 515
Hpy188I	TCNGA	6 cut(s)	42, 189, 264, 384, 527, 748
Hpy188III	TCNNGA	4 cut(s)	58, 109, 274, 349
Hpy8I	GTNNAC	2 cut(s)	82, 515
Hpy99I	CGWCG	1 cut(s)	358
HpyAV	CCTTC	3 cut(s)	37, 590, 875
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	2 cut(s)	123, 353
HpyCH4V	TGCA	2 cut(s)	692, 704
HpyF3I	CTNAG	3 cut(s)	39, 405, 633
HpySE526I	ACGT	2 cut(s)	123, 353
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	607
HspAI	GCGC	3 cut(s)	133, 297, 822
KpnI	GGTACC	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	724
KspI	CCGCGG	2 cut(s)	21, 876
Kzo9I	GATC	2 cut(s)	610, 724
LmnI	GCTCC	5 cut(s)	28, 351, 546, 757, 796
Lsp1109I	GCAGC	3 cut(s)	181, 409, 800
LweI	GCATC	5 cut(s)	501, 531, 555, 739, 757
MaeI	CTAG	2 cut(s)	545, 900
MaeII	ACGT	2 cut(s)	123, 353
MalI	GATC	2 cut(s)	612, 726
MboI	GATC	2 cut(s)	610, 724
MboII	GAAGA	5 cut(s)	118, 327, 610, 665, 671
MhlI	GDGCHC	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	760
MluCI	AATT	3 cut(s)	278, 411, 911
MluNI	TGGCCA	1 cut(s)	760
MmeI	TCCRAC	1 cut(s)	878
Mox20I	TGGCCA	1 cut(s)	760
MroXI	GAANNNNTTC	1 cut(s)	663
MscI	TGGCCA	1 cut(s)	760
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	760
MspA1I	CMGCKG	2 cut(s)	20, 875
MspI	CCGG	1 cut(s)	785
MspR9I	CCNGG	5 cut(s)	199, 327, 585, 785, 819
MvaI	CCWGG	4 cut(s)	199, 327, 585, 819
MvnI	CGCG	3 cut(s)	20, 28, 875
NciI	CCSGG	1 cut(s)	785
NdeII	GATC	2 cut(s)	610, 724
NlaIII	CATG	1 cut(s)	607
NlaIV	GGNNCC	3 cut(s)	24, 91, 542
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	4 cut(s)	220, 464, 842, 847
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	7 cut(s)	19, 22, 73, 137, 196, 424, 790
Psp6I	CCWGG	4 cut(s)	197, 325, 583, 817
PspFI	CCCAGC	1 cut(s)	906
PspGI	CCWGG	4 cut(s)	197, 325, 583, 817
PspN4I	GGNNCC	3 cut(s)	24, 91, 542
PspPI	GGNCC	2 cut(s)	252, 807
PstI	CTGCAG	1 cut(s)	694
PstNI	CAGNNNCTG	1 cut(s)	794
RsaI	GTAC	3 cut(s)	91, 240, 331
RsaNI	GTAC	3 cut(s)	90, 239, 330
RseI	CAYNNNNRTG	1 cut(s)	59
SacII	CCGCGG	2 cut(s)	21, 876
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	7 cut(s)	18, 21, 72, 136, 195, 423, 789
Sau3AI	GATC	2 cut(s)	610, 724
Sau96I	GGNCC	2 cut(s)	252, 807
ScrFI	CCNGG	5 cut(s)	199, 327, 585, 785, 819
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	5 cut(s)	501, 531, 555, 739, 757
SfcI	CTRYAG	2 cut(s)	622, 690
Sfr303I	CCGCGG	2 cut(s)	21, 876
SgrBI	CCGCGG	2 cut(s)	21, 876
SinI	GGWCC	1 cut(s)	807
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	3 cut(s)	278, 411, 911
SspMI	CTAG	2 cut(s)	545, 900
StyD4I	CCNGG	5 cut(s)	197, 325, 583, 783, 817
StyI	CCWWGG	3 cut(s)	225, 642, 755
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	2 cut(s)	126, 356
TaqI	TCGA	1 cut(s)	845
TasI	AATT	3 cut(s)	278, 411, 911
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	4 cut(s)	20, 23, 74, 138
TfiI	GAWTC	4 cut(s)	220, 464, 842, 847
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	298, 734
TseI	GCWGC	3 cut(s)	194, 422, 788
TspDTI	ATGAA	1 cut(s)	672
TspRI	CASTG	2 cut(s)	298, 734
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	807
XapI	RAATTY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	2 cut(s)	545, 900
ZraI	GACGTC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.