Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72370 AT1G72370 AT3G04770 |
| fragaria_vesca | FvH4_5g30400 FvH4_6g35470 |
| malus_domestica | MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1 |
| prunus_persica | Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1 |
| pyrus_communis | pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450 |
| rosa_chinensis | RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841 |
| rosa_laevigata | RLG00000001849 RLG00000020239 |
| rosa_multiflora | Rmu_sc0001880.1_g000034 |
| rosa_roxburghii | Rroxscaffold_3G00234340 |
| rosa_rugosa | Rorug02G0398000 Rorug07G0226500 |
| rosa_samantha | Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800 |
| rosa_wichuraiana | Rw2G037130 Rw2G037230 Rw7G031380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 158 |
| Acc65I | GGTACC | 1 cut(s) | 329 |
| AccB1I | GGYRCC | 2 cut(s) | 89, 329 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 794, 912 |
| AccII | CGCG | 1 cut(s) | 28 |
| AciI | CCGC | 6 cut(s) | 26, 72, 136, 194, 812, 848 |
| AclWI | GGATC | 1 cut(s) | 383 |
| AcoI | YGGCCR | 2 cut(s) | 69, 195 |
| AcsI | RAATTY | 1 cut(s) | 147 |
| AcuI | CTGAAG | 1 cut(s) | 170 |
| AfaI | GTAC | 2 cut(s) | 240, 331 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 794, 830, 912 |
| AflII | CTTAAG | 1 cut(s) | 275 |
| AgsI | TTSAA | 2 cut(s) | 361, 890 |
| AjnI | CCWGG | 4 cut(s) | 173, 197, 325, 583 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 411, 443 |
| AleI | CACNNNNGTG | 1 cut(s) | 294 |
| AluBI | AGCT | 6 cut(s) | 34, 190, 425, 746, 782, 791 |
| AluI | AGCT | 6 cut(s) | 34, 190, 425, 746, 782, 791 |
| AlwI | GGATC | 1 cut(s) | 383 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 794 |
| AoxI | GGCC | 5 cut(s) | 69, 195, 251, 639, 734 |
| ApeKI | GCWGC | 5 cut(s) | 14, 17, 422, 779, 782 |
| ApoI | RAATTY | 1 cut(s) | 147 |
| Asp718I | GGTACC | 1 cut(s) | 329 |
| AspLEI | GCGC | 1 cut(s) | 135 |
| AspS9I | GGNCC | 2 cut(s) | 79, 252 |
| AsuC2I | CCSGG | 2 cut(s) | 313, 708 |
| AsuHPI | GGTGA | 2 cut(s) | 214, 737 |
| AsuNHI | GCTAGC | 1 cut(s) | 763 |
| AvaII | GGWCC | 1 cut(s) | 79 |
| AxyI | CCTNAGG | 1 cut(s) | 633 |
| BaeGI | GKGCMC | 1 cut(s) | 92 |
| BanI | GGYRCC | 2 cut(s) | 89, 329 |
| BanII | GRGCYC | 1 cut(s) | 369 |
| BbsI | GAAGAC | 1 cut(s) | 365 |
| BbvCI | CCTCAGC | 1 cut(s) | 75 |
| BbvI | GCAGC | 4 cut(s) | 4, 434, 769, 791 |
| BccI | CCATC | 3 cut(s) | 106, 137, 547 |
| BciT130I | CCWGG | 4 cut(s) | 175, 199, 327, 585 |
| BclI | TGATCA | 2 cut(s) | 400, 727 |
| BcnI | CCSGG | 2 cut(s) | 313, 708 |
| BfaI | CTAG | 2 cut(s) | 545, 764 |
| BfmI | CTRYAG | 2 cut(s) | 622, 777 |
| BfoI | RGCGCY | 1 cut(s) | 136 |
| BfrI | CTTAAG | 1 cut(s) | 275 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 259 |
| BisI | GCNGC | 9 cut(s) | 15, 18, 72, 136, 195, 423, 780, 783, 849 |
| BlpI | GCTNAGC | 1 cut(s) | 285 |
| BlsI | GCNGC | 9 cut(s) | 16, 19, 73, 137, 196, 424, 781, 784, 850 |
| Bme1390I | CCNGG | 6 cut(s) | 175, 199, 313, 327, 585, 708 |
| Bme18I | GGWCC | 1 cut(s) | 79 |
| BmgT120I | GGNCC | 2 cut(s) | 79, 252 |
| BmiI | GGNNCC | 6 cut(s) | 91, 331, 542, 574, 852, 873 |
| BmrFI | CCNGG | 6 cut(s) | 175, 199, 313, 327, 585, 708 |
| BmsI | GCATC | 4 cut(s) | 336, 501, 742, 760 |
| BmtI | GCTAGC | 1 cut(s) | 767 |
| BpiI | GAAGAC | 1 cut(s) | 365 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 307, 339, 561, 593 |
| Bpu10I | CCTNAGC | 1 cut(s) | 75 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 285 |
| BpuMI | CCSGG | 2 cut(s) | 313, 708 |
| BsaJI | CCNNGG | 6 cut(s) | 174, 198, 225, 584, 642, 882 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 451, 481, 856, 886 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 794, 830, 912 |
| Bse1I | ACTGG | 2 cut(s) | 298, 913 |
| Bse21I | CCTNAGG | 1 cut(s) | 633 |
| Bse3DI | GCAATG | 2 cut(s) | 145, 444 |
| BseBI | CCWGG | 4 cut(s) | 175, 199, 327, 585 |
| BseDI | CCNNGG | 6 cut(s) | 174, 198, 225, 584, 642, 882 |
| BseGI | GGATG | 5 cut(s) | 54, 492, 533, 558, 604 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 794, 830, 912 |
| BseMI | GCAATG | 2 cut(s) | 145, 444 |
| BseMII | CTCAG | 5 cut(s) | 53, 66, 299, 624, 690 |
| BseNI | ACTGG | 2 cut(s) | 298, 913 |
| BseRI | GAGGAG | 2 cut(s) | 650, 668 |
| BseSI | GKGCMC | 1 cut(s) | 92 |
| BseXI | GCAGC | 4 cut(s) | 4, 434, 769, 791 |
| BseYI | CCCAGC | 3 cut(s) | 496, 787, 912 |
| BsgI | GTGCAG | 1 cut(s) | 687 |
| Bsh1236I | CGCG | 1 cut(s) | 28 |
| BshFI | GGCC | 5 cut(s) | 71, 197, 253, 641, 736 |
| BshNI | GGYRCC | 2 cut(s) | 89, 329 |
| BsiSI | CCGG | 2 cut(s) | 312, 708 |
| BslFI | GGGAC | 1 cut(s) | 191 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 794, 830, 912 |
| BsmFI | GGGAC | 1 cut(s) | 191 |
| BsmI | GAATGC | 1 cut(s) | 814 |
| BsnI | GGCC | 5 cut(s) | 71, 197, 253, 641, 736 |
| Bsp1286I | GDGCHC | 2 cut(s) | 92, 369 |
| Bsp1407I | TGTACA | 1 cut(s) | 238 |
| Bsp143I | GATC | 5 cut(s) | 388, 400, 610, 715, 727 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 285 |
| BspACI | CCGC | 6 cut(s) | 26, 72, 136, 194, 812, 848 |
| BspANI | GGCC | 5 cut(s) | 71, 197, 253, 641, 736 |
| BspCNI | CTCAG | 5 cut(s) | 52, 67, 298, 625, 689 |
| BspFNI | CGCG | 1 cut(s) | 28 |
| BspLI | GGNNCC | 6 cut(s) | 91, 331, 542, 574, 852, 873 |
| BspMAI | CTGCAG | 1 cut(s) | 781 |
| BspOI | GCTAGC | 1 cut(s) | 767 |
| BspPI | GGATC | 1 cut(s) | 383 |
| BspT107I | GGYRCC | 2 cut(s) | 89, 329 |
| BspTI | CTTAAG | 1 cut(s) | 275 |
| BsrDI | GCAATG | 2 cut(s) | 145, 444 |
| BsrGI | TGTACA | 1 cut(s) | 238 |
| BsrI | ACTGG | 2 cut(s) | 298, 913 |
| BssECI | CCNNGG | 6 cut(s) | 174, 198, 225, 584, 642, 882 |
| BssMI | GATC | 5 cut(s) | 388, 400, 610, 715, 727 |
| BssT1I | CCWWGG | 2 cut(s) | 225, 642 |
| Bst2UI | CCWGG | 4 cut(s) | 175, 199, 327, 585 |
| Bst4CI | ACNGT | 1 cut(s) | 101 |
| BstAFI | CTTAAG | 1 cut(s) | 275 |
| BstAUI | TGTACA | 1 cut(s) | 238 |
| BstC8I | GCNNGC | 2 cut(s) | 192, 765 |
| BstDEI | CTNAG | 5 cut(s) | 39, 75, 285, 633, 676 |
| BstF5I | GGATG | 5 cut(s) | 54, 492, 533, 558, 604 |
| BstFNI | CGCG | 1 cut(s) | 28 |
| BstH2I | RGCGCY | 1 cut(s) | 136 |
| BstHHI | GCGC | 1 cut(s) | 135 |
| BstKTI | GATC | 5 cut(s) | 391, 403, 613, 718, 730 |
| BstMBI | GATC | 5 cut(s) | 388, 400, 610, 715, 727 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 11, 259, 752, 779, 788, 818 |
| BstNI | CCWGG | 4 cut(s) | 175, 199, 327, 585 |
| BstSCI | CCNGG | 6 cut(s) | 173, 197, 311, 325, 583, 706 |
| BstSFI | CTRYAG | 2 cut(s) | 622, 777 |
| BstSLI | GKGCMC | 1 cut(s) | 92 |
| BstUI | CGCG | 1 cut(s) | 28 |
| BstV1I | GCAGC | 4 cut(s) | 4, 434, 769, 791 |
| BstV2I | GAAGAC | 1 cut(s) | 365 |
| Bsu36I | CCTNAGG | 1 cut(s) | 633 |
| BsuRI | GGCC | 5 cut(s) | 71, 197, 253, 641, 736 |
| BtsCI | GGATG | 5 cut(s) | 54, 492, 533, 558, 604 |
| BtsIMutI | CAGTG | 2 cut(s) | 291, 906 |
| Cac8I | GCNNGC | 2 cut(s) | 192, 765 |
| CaiI | CAGNNNCTG | 1 cut(s) | 794 |
| CfoI | GCGC | 1 cut(s) | 135 |
| Cfr13I | GGNCC | 2 cut(s) | 79, 252 |
| CseI | GACGC | 1 cut(s) | 17 |
| Csp6I | GTAC | 2 cut(s) | 239, 330 |
| CviAII | CATG | 1 cut(s) | 604 |
| CviQI | GTAC | 2 cut(s) | 239, 330 |
| DdeI | CTNAG | 5 cut(s) | 39, 75, 285, 633, 676 |
| DpnI | GATC | 5 cut(s) | 390, 402, 612, 717, 729 |
| DpnII | GATC | 5 cut(s) | 388, 400, 610, 715, 727 |
| EaeI | YGGCCR | 2 cut(s) | 69, 195 |
| Eco130I | CCWWGG | 2 cut(s) | 225, 642 |
| Eco24I | GRGCYC | 1 cut(s) | 369 |
| Eco47I | GGWCC | 1 cut(s) | 79 |
| Eco57I | CTGAAG | 1 cut(s) | 170 |
| Eco81I | CCTNAGG | 1 cut(s) | 633 |
| EcoO109I | RGGNCCY | 1 cut(s) | 252 |
| EcoRII | CCWGG | 4 cut(s) | 173, 197, 325, 583 |
| EcoT14I | CCWWGG | 2 cut(s) | 225, 642 |
| EcoT38I | GRGCYC | 1 cut(s) | 369 |
| ErhI | CCWWGG | 2 cut(s) | 225, 642 |
| FaeI | CATG | 1 cut(s) | 607 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 411, 443 |
| FaqI | GGGAC | 1 cut(s) | 191 |
| FatI | CATG | 1 cut(s) | 603 |
| FbaI | TGATCA | 2 cut(s) | 400, 727 |
| Fnu4HI | GCNGC | 9 cut(s) | 15, 18, 72, 136, 195, 423, 780, 783, 849 |
| FokI | GGATG | 5 cut(s) | 41, 479, 540, 565, 611 |
| FriOI | GRGCYC | 1 cut(s) | 369 |
| Fsp4HI | GCNGC | 9 cut(s) | 15, 18, 72, 136, 195, 423, 780, 783, 849 |
| FspBI | CTAG | 2 cut(s) | 545, 764 |
| GlaI | GCGC | 1 cut(s) | 134 |
| GluI | GCNGC | 9 cut(s) | 15, 18, 72, 136, 195, 423, 780, 783, 849 |
| GsaI | CCCAGC | 3 cut(s) | 500, 791, 916 |
| HaeII | RGCGCY | 1 cut(s) | 136 |
| HaeIII | GGCC | 5 cut(s) | 71, 197, 253, 641, 736 |
| HapII | CCGG | 2 cut(s) | 312, 708 |
| HgaI | GACGC | 1 cut(s) | 17 |
| HhaI | GCGC | 1 cut(s) | 135 |
| Hin1II | CATG | 1 cut(s) | 607 |
| Hin6I | GCGC | 1 cut(s) | 133 |
| HinP1I | GCGC | 1 cut(s) | 133 |
| HindIII | AAGCTT | 1 cut(s) | 744 |
| HinfI | GANTC | 3 cut(s) | 220, 464, 674 |
| HpaII | CCGG | 2 cut(s) | 312, 708 |
| HphI | GGTGA | 2 cut(s) | 214, 737 |
| Hpy188I | TCNGA | 4 cut(s) | 42, 111, 384, 751 |
| HpyAV | CCTTC | 1 cut(s) | 884 |
| HpyCH4III | ACNGT | 1 cut(s) | 101 |
| HpyCH4IV | ACGT | 1 cut(s) | 123 |
| HpyCH4V | TGCA | 6 cut(s) | 20, 305, 349, 671, 704, 779 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 11, 259, 752, 779, 788, 818 |
| HpyF3I | CTNAG | 5 cut(s) | 39, 75, 285, 633, 676 |
| HpySE526I | ACGT | 1 cut(s) | 123 |
| Hsp92II | CATG | 1 cut(s) | 607 |
| HspAI | GCGC | 1 cut(s) | 133 |
| KpnI | GGTACC | 1 cut(s) | 333 |
| Ksp22I | TGATCA | 2 cut(s) | 400, 727 |
| Kzo9I | GATC | 5 cut(s) | 388, 400, 610, 715, 727 |
| LmnI | GCTCC | 3 cut(s) | 546, 856, 877 |
| Lsp1109I | GCAGC | 4 cut(s) | 4, 434, 769, 791 |
| LweI | GCATC | 4 cut(s) | 336, 501, 742, 760 |
| MaeI | CTAG | 2 cut(s) | 545, 764 |
| MaeII | ACGT | 1 cut(s) | 123 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MalI | GATC | 5 cut(s) | 390, 402, 612, 717, 729 |
| MboI | GATC | 5 cut(s) | 388, 400, 610, 715, 727 |
| MboII | GAAGA | 3 cut(s) | 365, 610, 671 |
| MfeI | CAATTG | 1 cut(s) | 306 |
| MhlI | GDGCHC | 2 cut(s) | 92, 369 |
| MluCI | AATT | 3 cut(s) | 147, 234, 306 |
| MlyI | GAGTC | 1 cut(s) | 668 |
| MseI | TTAA | 3 cut(s) | 129, 276, 827 |
| MslI | CAYNNNNRTG | 2 cut(s) | 59, 294 |
| MspA1I | CMGCKG | 3 cut(s) | 74, 190, 782 |
| MspCI | CTTAAG | 1 cut(s) | 275 |
| MspI | CCGG | 2 cut(s) | 312, 708 |
| MspR9I | CCNGG | 6 cut(s) | 175, 199, 313, 327, 585, 708 |
| MunI | CAATTG | 1 cut(s) | 306 |
| Mva1269I | GAATGC | 1 cut(s) | 814 |
| MvaI | CCWGG | 4 cut(s) | 175, 199, 327, 585 |
| MvnI | CGCG | 1 cut(s) | 28 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 11, 259, 752, 779, 788, 818 |
| NciI | CCSGG | 2 cut(s) | 313, 708 |
| NdeII | GATC | 5 cut(s) | 388, 400, 610, 715, 727 |
| NheI | GCTAGC | 1 cut(s) | 763 |
| NlaIII | CATG | 1 cut(s) | 607 |
| NlaIV | GGNNCC | 6 cut(s) | 91, 331, 542, 574, 852, 873 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| OliI | CACNNNNGTG | 1 cut(s) | 294 |
| PctI | GAATGC | 1 cut(s) | 814 |
| PfeI | GAWTC | 2 cut(s) | 220, 464 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 794, 912 |
| PkrI | GCNGC | 9 cut(s) | 16, 19, 73, 137, 196, 424, 781, 784, 850 |
| PleI | GAGTC | 1 cut(s) | 668 |
| PpsI | GAGTC | 1 cut(s) | 668 |
| PsiI | TTATAA | 1 cut(s) | 158 |
| Psp6I | CCWGG | 4 cut(s) | 173, 197, 325, 583 |
| PspFI | CCCAGC | 3 cut(s) | 496, 787, 912 |
| PspGI | CCWGG | 4 cut(s) | 173, 197, 325, 583 |
| PspN4I | GGNNCC | 6 cut(s) | 91, 331, 542, 574, 852, 873 |
| PspPI | GGNCC | 2 cut(s) | 79, 252 |
| PstI | CTGCAG | 1 cut(s) | 781 |
| PstNI | CAGNNNCTG | 1 cut(s) | 794 |
| PvuII | CAGCTG | 2 cut(s) | 190, 782 |
| RsaI | GTAC | 2 cut(s) | 240, 331 |
| RsaNI | GTAC | 2 cut(s) | 239, 330 |
| RseI | CAYNNNNRTG | 2 cut(s) | 59, 294 |
| SaqAI | TTAA | 3 cut(s) | 129, 276, 827 |
| SatI | GCNGC | 9 cut(s) | 15, 18, 72, 136, 195, 423, 780, 783, 849 |
| Sau3AI | GATC | 5 cut(s) | 388, 400, 610, 715, 727 |
| Sau96I | GGNCC | 2 cut(s) | 79, 252 |
| SchI | GAGTC | 1 cut(s) | 668 |
| ScrFI | CCNGG | 6 cut(s) | 175, 199, 313, 327, 585, 708 |
| SduI | GDGCHC | 2 cut(s) | 92, 369 |
| SfaNI | GCATC | 4 cut(s) | 336, 501, 742, 760 |
| SfcI | CTRYAG | 2 cut(s) | 622, 777 |
| SinI | GGWCC | 1 cut(s) | 79 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 59, 294 |
| SmlI | CTYRAG | 1 cut(s) | 275 |
| SmoI | CTYRAG | 1 cut(s) | 275 |
| Sse9I | AATT | 3 cut(s) | 147, 234, 306 |
| SsiI | CCGC | 6 cut(s) | 26, 72, 136, 194, 812, 848 |
| SspMI | CTAG | 2 cut(s) | 545, 764 |
| StyD4I | CCNGG | 6 cut(s) | 173, 197, 311, 325, 583, 706 |
| StyI | CCWWGG | 2 cut(s) | 225, 642 |
| TaaI | ACNGT | 1 cut(s) | 101 |
| TaiI | ACGT | 1 cut(s) | 126 |
| TasI | AATT | 3 cut(s) | 147, 234, 306 |
| TatI | WGTACW | 1 cut(s) | 238 |
| TauI | GCSGC | 4 cut(s) | 74, 138, 197, 851 |
| TfiI | GAWTC | 2 cut(s) | 220, 464 |
| Tru1I | TTAA | 3 cut(s) | 129, 276, 827 |
| Tru9I | TTAA | 3 cut(s) | 129, 276, 827 |
| TscAI | CASTG | 2 cut(s) | 298, 913 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| TseI | GCWGC | 5 cut(s) | 14, 17, 422, 779, 782 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspGWI | ACGGA | 1 cut(s) | 569 |
| TspRI | CASTG | 2 cut(s) | 298, 913 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 794, 912 |
| Vha464I | CTTAAG | 1 cut(s) | 275 |
| VpaK11BI | GGWCC | 1 cut(s) | 79 |
| XapI | RAATTY | 1 cut(s) | 147 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 591 |
| XspI | CTAG | 2 cut(s) | 545, 764 |