Prupe.3G034600_v2.0.a1

Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
2533030 .. 2535642
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G034600.1

Sequence Viewer

Length: 921 bp
ATGGCGACCAACGCTGCTGCACCTCCGCGTCAGCTTTCTCAGAAAGAGGCTGACATCCAAATGATGTTGGCCGCTGAGGTCCATTTGGGCACCAAAAACTGTGACTTTCAGATGGAAAGATACGTCTTTAAGCGCCGCAATGATGGAATTTACATTATAAATCTTGGCAAAACCTGGGACAAACTTCAGCTGGCGGCCAGGGTGATTGTTGCGATTGAGAATCCCAAGGATATAATTGTACAATCAGCAAGGCCCTATGGGCAGAGGGCTGTCCTTAAGTTTGCTCAGCACACTGGTGCTAATGCAATTGCCGGGAGGCACACTCCTGGTACCTTTACCAACCAGATGCAGACTTCTTTCAACGAGCCCCGTCTTCTCATTCTGACTGATCCAAGAACTGATCATCAGCCAATCAAGGAAGCAGCTCTTGGAAACATACCCACCATTGCTTTCTGTGATACTGATTCTCCTATGCGTTATGTTGATATTGGCATCCCAGCCAATAACAAGGGAAAGCACAGCATAGGATGTCTGTTTTGGCTCCTAGCAAGGATGGTTTTGGAGATGAGAGGTTCCCTCCGTCCAGGGCATAAGTGGGATGTCATGGTTGATCTGTTCTTCTATAGAGAGCCTGAGGAGGCCAAGGAAAAGGAGGAGGAAGAAGCAGTTGCAGACTCAGGTTATGGAATGGGTGGATATACTGCACCCGGTATTGATCTTGGTGGTGATCAATGGCCTACCCAAGCTTCTGATGCTACTTGGCTAGCAGATGCCCCTGCAGCTGCCCCAGCTTCTGGTGTTGGCTGGAATGCGGAAACAGCACCTTTAACGGGAGATGTGTGGGAGGCGGCTCCTATTCCACCAACACAGGCTCCTGCCCCCTCGGTTGAAGGTGCTTCTACTCCCACTGGCTGGGAATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

307

Amino Acids

33.38

Weight (kDa)

5.24

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
Acc65I GGTACC 1 cut(s) 329
AccB1I GGYRCC 2 cut(s) 89, 329
AccB7I CCANNNNNTGG 2 cut(s) 794, 912
AccII CGCG 1 cut(s) 28
AciI CCGC 6 cut(s) 26, 72, 136, 194, 812, 848
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 2 cut(s) 69, 195
AcsI RAATTY 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 2 cut(s) 240, 331
AfiI CCNNNNNNNGG 3 cut(s) 794, 830, 912
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 2 cut(s) 361, 890
AjnI CCWGG 4 cut(s) 173, 197, 325, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 6 cut(s) 34, 190, 425, 746, 782, 791
AluI AGCT 6 cut(s) 34, 190, 425, 746, 782, 791
AlwI GGATC 1 cut(s) 383
AlwNI CAGNNNCTG 1 cut(s) 794
AoxI GGCC 5 cut(s) 69, 195, 251, 639, 734
ApeKI GCWGC 5 cut(s) 14, 17, 422, 779, 782
ApoI RAATTY 1 cut(s) 147
Asp718I GGTACC 1 cut(s) 329
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 2 cut(s) 79, 252
AsuC2I CCSGG 2 cut(s) 313, 708
AsuHPI GGTGA 2 cut(s) 214, 737
AsuNHI GCTAGC 1 cut(s) 763
AvaII GGWCC 1 cut(s) 79
AxyI CCTNAGG 1 cut(s) 633
BaeGI GKGCMC 1 cut(s) 92
BanI GGYRCC 2 cut(s) 89, 329
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 365
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 4 cut(s) 4, 434, 769, 791
BccI CCATC 3 cut(s) 106, 137, 547
BciT130I CCWGG 4 cut(s) 175, 199, 327, 585
BclI TGATCA 2 cut(s) 400, 727
BcnI CCSGG 2 cut(s) 313, 708
BfaI CTAG 2 cut(s) 545, 764
BfmI CTRYAG 2 cut(s) 622, 777
BfoI RGCGCY 1 cut(s) 136
BfrI CTTAAG 1 cut(s) 275
BglI GCCNNNNNGGC 1 cut(s) 259
BisI GCNGC 9 cut(s) 15, 18, 72, 136, 195, 423, 780, 783, 849
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 9 cut(s) 16, 19, 73, 137, 196, 424, 781, 784, 850
Bme1390I CCNGG 6 cut(s) 175, 199, 313, 327, 585, 708
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 2 cut(s) 79, 252
BmiI GGNNCC 6 cut(s) 91, 331, 542, 574, 852, 873
BmrFI CCNGG 6 cut(s) 175, 199, 313, 327, 585, 708
BmsI GCATC 4 cut(s) 336, 501, 742, 760
BmtI GCTAGC 1 cut(s) 767
BpiI GAAGAC 1 cut(s) 365
BplI GAGNNNNNCTC 4 cut(s) 307, 339, 561, 593
Bpu10I CCTNAGC 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 285
BpuMI CCSGG 2 cut(s) 313, 708
BsaJI CCNNGG 6 cut(s) 174, 198, 225, 584, 642, 882
BsaXI ACNNNNNCTCC 4 cut(s) 451, 481, 856, 886
Bsc4I CCNNNNNNNGG 3 cut(s) 794, 830, 912
Bse1I ACTGG 2 cut(s) 298, 913
Bse21I CCTNAGG 1 cut(s) 633
Bse3DI GCAATG 2 cut(s) 145, 444
BseBI CCWGG 4 cut(s) 175, 199, 327, 585
BseDI CCNNGG 6 cut(s) 174, 198, 225, 584, 642, 882
BseGI GGATG 5 cut(s) 54, 492, 533, 558, 604
BseLI CCNNNNNNNGG 3 cut(s) 794, 830, 912
BseMI GCAATG 2 cut(s) 145, 444
BseMII CTCAG 5 cut(s) 53, 66, 299, 624, 690
BseNI ACTGG 2 cut(s) 298, 913
BseRI GAGGAG 2 cut(s) 650, 668
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 4 cut(s) 4, 434, 769, 791
BseYI CCCAGC 3 cut(s) 496, 787, 912
BsgI GTGCAG 1 cut(s) 687
Bsh1236I CGCG 1 cut(s) 28
BshFI GGCC 5 cut(s) 71, 197, 253, 641, 736
BshNI GGYRCC 2 cut(s) 89, 329
BsiSI CCGG 2 cut(s) 312, 708
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 3 cut(s) 794, 830, 912
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 5 cut(s) 71, 197, 253, 641, 736
Bsp1286I GDGCHC 2 cut(s) 92, 369
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 5 cut(s) 388, 400, 610, 715, 727
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 6 cut(s) 26, 72, 136, 194, 812, 848
BspANI GGCC 5 cut(s) 71, 197, 253, 641, 736
BspCNI CTCAG 5 cut(s) 52, 67, 298, 625, 689
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 6 cut(s) 91, 331, 542, 574, 852, 873
BspMAI CTGCAG 1 cut(s) 781
BspOI GCTAGC 1 cut(s) 767
BspPI GGATC 1 cut(s) 383
BspT107I GGYRCC 2 cut(s) 89, 329
BspTI CTTAAG 1 cut(s) 275
BsrDI GCAATG 2 cut(s) 145, 444
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 2 cut(s) 298, 913
BssECI CCNNGG 6 cut(s) 174, 198, 225, 584, 642, 882
BssMI GATC 5 cut(s) 388, 400, 610, 715, 727
BssT1I CCWWGG 2 cut(s) 225, 642
Bst2UI CCWGG 4 cut(s) 175, 199, 327, 585
Bst4CI ACNGT 1 cut(s) 101
BstAFI CTTAAG 1 cut(s) 275
BstAUI TGTACA 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 192, 765
BstDEI CTNAG 5 cut(s) 39, 75, 285, 633, 676
BstF5I GGATG 5 cut(s) 54, 492, 533, 558, 604
BstFNI CGCG 1 cut(s) 28
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 5 cut(s) 391, 403, 613, 718, 730
BstMBI GATC 5 cut(s) 388, 400, 610, 715, 727
BstMWI GCNNNNNNNGC 6 cut(s) 11, 259, 752, 779, 788, 818
BstNI CCWGG 4 cut(s) 175, 199, 327, 585
BstSCI CCNGG 6 cut(s) 173, 197, 311, 325, 583, 706
BstSFI CTRYAG 2 cut(s) 622, 777
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 4 cut(s) 4, 434, 769, 791
BstV2I GAAGAC 1 cut(s) 365
Bsu36I CCTNAGG 1 cut(s) 633
BsuRI GGCC 5 cut(s) 71, 197, 253, 641, 736
BtsCI GGATG 5 cut(s) 54, 492, 533, 558, 604
BtsIMutI CAGTG 2 cut(s) 291, 906
Cac8I GCNNGC 2 cut(s) 192, 765
CaiI CAGNNNCTG 1 cut(s) 794
CfoI GCGC 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 79, 252
CseI GACGC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 239, 330
CviAII CATG 1 cut(s) 604
CviQI GTAC 2 cut(s) 239, 330
DdeI CTNAG 5 cut(s) 39, 75, 285, 633, 676
DpnI GATC 5 cut(s) 390, 402, 612, 717, 729
DpnII GATC 5 cut(s) 388, 400, 610, 715, 727
EaeI YGGCCR 2 cut(s) 69, 195
Eco130I CCWWGG 2 cut(s) 225, 642
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 170
Eco81I CCTNAGG 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 252
EcoRII CCWGG 4 cut(s) 173, 197, 325, 583
EcoT14I CCWWGG 2 cut(s) 225, 642
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 2 cut(s) 225, 642
FaeI CATG 1 cut(s) 607
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 1 cut(s) 191
FatI CATG 1 cut(s) 603
FbaI TGATCA 2 cut(s) 400, 727
Fnu4HI GCNGC 9 cut(s) 15, 18, 72, 136, 195, 423, 780, 783, 849
FokI GGATG 5 cut(s) 41, 479, 540, 565, 611
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 9 cut(s) 15, 18, 72, 136, 195, 423, 780, 783, 849
FspBI CTAG 2 cut(s) 545, 764
GlaI GCGC 1 cut(s) 134
GluI GCNGC 9 cut(s) 15, 18, 72, 136, 195, 423, 780, 783, 849
GsaI CCCAGC 3 cut(s) 500, 791, 916
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 5 cut(s) 71, 197, 253, 641, 736
HapII CCGG 2 cut(s) 312, 708
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 135
Hin1II CATG 1 cut(s) 607
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 3 cut(s) 220, 464, 674
HpaII CCGG 2 cut(s) 312, 708
HphI GGTGA 2 cut(s) 214, 737
Hpy188I TCNGA 4 cut(s) 42, 111, 384, 751
HpyAV CCTTC 1 cut(s) 884
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 6 cut(s) 20, 305, 349, 671, 704, 779
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 259, 752, 779, 788, 818
HpyF3I CTNAG 5 cut(s) 39, 75, 285, 633, 676
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 1 cut(s) 607
HspAI GCGC 1 cut(s) 133
KpnI GGTACC 1 cut(s) 333
Ksp22I TGATCA 2 cut(s) 400, 727
Kzo9I GATC 5 cut(s) 388, 400, 610, 715, 727
LmnI GCTCC 3 cut(s) 546, 856, 877
Lsp1109I GCAGC 4 cut(s) 4, 434, 769, 791
LweI GCATC 4 cut(s) 336, 501, 742, 760
MaeI CTAG 2 cut(s) 545, 764
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 101
MalI GATC 5 cut(s) 390, 402, 612, 717, 729
MboI GATC 5 cut(s) 388, 400, 610, 715, 727
MboII GAAGA 3 cut(s) 365, 610, 671
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 2 cut(s) 92, 369
MluCI AATT 3 cut(s) 147, 234, 306
MlyI GAGTC 1 cut(s) 668
MseI TTAA 3 cut(s) 129, 276, 827
MslI CAYNNNNRTG 2 cut(s) 59, 294
MspA1I CMGCKG 3 cut(s) 74, 190, 782
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 2 cut(s) 312, 708
MspR9I CCNGG 6 cut(s) 175, 199, 313, 327, 585, 708
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 814
MvaI CCWGG 4 cut(s) 175, 199, 327, 585
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 6 cut(s) 11, 259, 752, 779, 788, 818
NciI CCSGG 2 cut(s) 313, 708
NdeII GATC 5 cut(s) 388, 400, 610, 715, 727
NheI GCTAGC 1 cut(s) 763
NlaIII CATG 1 cut(s) 607
NlaIV GGNNCC 6 cut(s) 91, 331, 542, 574, 852, 873
NmuCI GTSAC 1 cut(s) 101
OliI CACNNNNGTG 1 cut(s) 294
PctI GAATGC 1 cut(s) 814
PfeI GAWTC 2 cut(s) 220, 464
PflMI CCANNNNNTGG 2 cut(s) 794, 912
PkrI GCNGC 9 cut(s) 16, 19, 73, 137, 196, 424, 781, 784, 850
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
PsiI TTATAA 1 cut(s) 158
Psp6I CCWGG 4 cut(s) 173, 197, 325, 583
PspFI CCCAGC 3 cut(s) 496, 787, 912
PspGI CCWGG 4 cut(s) 173, 197, 325, 583
PspN4I GGNNCC 6 cut(s) 91, 331, 542, 574, 852, 873
PspPI GGNCC 2 cut(s) 79, 252
PstI CTGCAG 1 cut(s) 781
PstNI CAGNNNCTG 1 cut(s) 794
PvuII CAGCTG 2 cut(s) 190, 782
RsaI GTAC 2 cut(s) 240, 331
RsaNI GTAC 2 cut(s) 239, 330
RseI CAYNNNNRTG 2 cut(s) 59, 294
SaqAI TTAA 3 cut(s) 129, 276, 827
SatI GCNGC 9 cut(s) 15, 18, 72, 136, 195, 423, 780, 783, 849
Sau3AI GATC 5 cut(s) 388, 400, 610, 715, 727
Sau96I GGNCC 2 cut(s) 79, 252
SchI GAGTC 1 cut(s) 668
ScrFI CCNGG 6 cut(s) 175, 199, 313, 327, 585, 708
SduI GDGCHC 2 cut(s) 92, 369
SfaNI GCATC 4 cut(s) 336, 501, 742, 760
SfcI CTRYAG 2 cut(s) 622, 777
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 2 cut(s) 59, 294
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 3 cut(s) 147, 234, 306
SsiI CCGC 6 cut(s) 26, 72, 136, 194, 812, 848
SspMI CTAG 2 cut(s) 545, 764
StyD4I CCNGG 6 cut(s) 173, 197, 311, 325, 583, 706
StyI CCWWGG 2 cut(s) 225, 642
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 126
TasI AATT 3 cut(s) 147, 234, 306
TatI WGTACW 1 cut(s) 238
TauI GCSGC 4 cut(s) 74, 138, 197, 851
TfiI GAWTC 2 cut(s) 220, 464
Tru1I TTAA 3 cut(s) 129, 276, 827
Tru9I TTAA 3 cut(s) 129, 276, 827
TscAI CASTG 2 cut(s) 298, 913
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 5 cut(s) 14, 17, 422, 779, 782
Tsp45I GTSAC 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 2 cut(s) 298, 913
Van91I CCANNNNNTGG 2 cut(s) 794, 912
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 591
XspI CTAG 2 cut(s) 545, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.