Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72370 AT1G72370 AT3G04770 |
| fragaria_vesca | FvH4_5g30400 FvH4_6g35470 |
| malus_domestica | MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1 |
| prunus_persica | Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1 |
| pyrus_communis | pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450 |
| rosa_chinensis | RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841 |
| rosa_laevigata | RLG00000001849 RLG00000020239 |
| rosa_multiflora | Rmu_sc0001880.1_g000034 |
| rosa_roxburghii | Rroxscaffold_3G00234340 |
| rosa_rugosa | Rorug02G0398000 Rorug07G0226500 |
| rosa_samantha | Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800 |
| rosa_wichuraiana | Rw2G037130 Rw2G037230 Rw7G031380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 263, 470 |
| AccBSI | CCGCTC | 1 cut(s) | 1058 |
| AccII | CGCG | 1 cut(s) | 202 |
| AciI | CCGC | 7 cut(s) | 86, 189, 192, 200, 246, 420, 1056 |
| AclWI | GGATC | 2 cut(s) | 557, 797 |
| AcoI | YGGCCR | 3 cut(s) | 134, 243, 914 |
| AcsI | RAATTY | 1 cut(s) | 452 |
| AfaI | GTAC | 3 cut(s) | 447, 505, 851 |
| AgsI | TTSAA | 5 cut(s) | 167, 304, 392, 535, 1043 |
| AjnI | CCWGG | 1 cut(s) | 949 |
| AleI | CACNNNNGTG | 1 cut(s) | 468 |
| AluBI | AGCT | 6 cut(s) | 208, 358, 364, 520, 596, 947 |
| AluI | AGCT | 6 cut(s) | 208, 358, 364, 520, 596, 947 |
| Alw26I | GTCTC | 2 cut(s) | 175, 301 |
| AlwI | GGATC | 2 cut(s) | 557, 797 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 950, 1021 |
| AoxI | GGCC | 5 cut(s) | 134, 243, 425, 813, 914 |
| ApoI | RAATTY | 1 cut(s) | 452 |
| AseI | ATTAAT | 1 cut(s) | 333 |
| AspA2I | CCTAGG | 1 cut(s) | 43 |
| AspS9I | GGNCC | 1 cut(s) | 957 |
| AsuC2I | CCSGG | 2 cut(s) | 501, 759 |
| AvaII | GGWCC | 1 cut(s) | 957 |
| AvrII | CCTAGG | 1 cut(s) | 43 |
| AxyI | CCTNAGG | 1 cut(s) | 807 |
| BaeGI | GKGCMC | 1 cut(s) | 266 |
| BalI | TGGCCA | 1 cut(s) | 916 |
| BanI | GGYRCC | 2 cut(s) | 263, 470 |
| BbsI | GAAGAC | 2 cut(s) | 292, 539 |
| BccI | CCATC | 8 cut(s) | 172, 264, 280, 311, 721, 944, 980, 984 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 848, 882 |
| BciT130I | CCWGG | 1 cut(s) | 951 |
| BcnI | CCSGG | 2 cut(s) | 501, 759 |
| BcoDI | GTCTC | 2 cut(s) | 175, 301 |
| BfaI | CTAG | 2 cut(s) | 44, 719 |
| BfmI | CTRYAG | 4 cut(s) | 359, 796, 837, 942 |
| BlnI | CCTAGG | 1 cut(s) | 43 |
| BlpI | GCTNAGC | 1 cut(s) | 459 |
| Bme1390I | CCNGG | 3 cut(s) | 501, 759, 951 |
| Bme18I | GGWCC | 1 cut(s) | 957 |
| BmgT120I | GGNCC | 1 cut(s) | 957 |
| BmiI | GGNNCC | 2 cut(s) | 265, 472 |
| BmrFI | CCNGG | 3 cut(s) | 501, 759, 951 |
| BmsI | GCATC | 4 cut(s) | 675, 895, 913, 935 |
| BpiI | GAAGAC | 2 cut(s) | 292, 539 |
| BpmI | CTGGAG | 1 cut(s) | 506 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 459 |
| BpuMI | CCSGG | 2 cut(s) | 501, 759 |
| BsaJI | CCNNGG | 2 cut(s) | 43, 816 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 625, 655 |
| Bse118I | RCCGGY | 1 cut(s) | 1064 |
| Bse1I | ACTGG | 1 cut(s) | 472 |
| Bse21I | CCTNAGG | 1 cut(s) | 807 |
| Bse3DI | GCAATG | 1 cut(s) | 618 |
| BseBI | CCWGG | 1 cut(s) | 951 |
| BseDI | CCNNGG | 2 cut(s) | 43, 816 |
| BseGI | GGATG | 7 cut(s) | 666, 707, 732, 778, 928, 936, 995 |
| BseMI | GCAATG | 1 cut(s) | 618 |
| BseMII | CTCAG | 4 cut(s) | 227, 473, 798, 923 |
| BseNI | ACTGG | 1 cut(s) | 472 |
| BseRI | GAGGAG | 2 cut(s) | 29, 824 |
| BseSI | GKGCMC | 1 cut(s) | 266 |
| BseX3I | CGGCCG | 1 cut(s) | 134 |
| BseYI | CCCAGC | 2 cut(s) | 670, 1068 |
| BsgI | GTGCAG | 1 cut(s) | 915 |
| Bsh1236I | CGCG | 1 cut(s) | 202 |
| Bsh1285I | CGRYCG | 1 cut(s) | 137 |
| BshFI | GGCC | 5 cut(s) | 136, 245, 427, 815, 916 |
| BshNI | GGYRCC | 2 cut(s) | 263, 470 |
| BsiEI | CGRYCG | 1 cut(s) | 137 |
| BsiSI | CCGG | 4 cut(s) | 137, 501, 759, 1065 |
| BslFI | GGGAC | 1 cut(s) | 365 |
| BsmAI | GTCTC | 2 cut(s) | 175, 301 |
| BsmBI | CGTCTC | 1 cut(s) | 301 |
| BsmFI | GGGAC | 1 cut(s) | 365 |
| BsnI | GGCC | 5 cut(s) | 136, 245, 427, 815, 916 |
| Bsp1286I | GDGCHC | 1 cut(s) | 266 |
| Bsp143I | GATC | 3 cut(s) | 562, 784, 802 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 459 |
| BspACI | CCGC | 7 cut(s) | 86, 189, 192, 200, 246, 420, 1056 |
| BspANI | GGCC | 5 cut(s) | 136, 245, 427, 815, 916 |
| BspCNI | CTCAG | 4 cut(s) | 226, 472, 799, 922 |
| BspFNI | CGCG | 1 cut(s) | 202 |
| BspLI | GGNNCC | 2 cut(s) | 265, 472 |
| BspMAI | CTGCAG | 3 cut(s) | 363, 841, 946 |
| BspPI | GGATC | 2 cut(s) | 557, 797 |
| BspT107I | GGYRCC | 2 cut(s) | 263, 470 |
| BsrBI | CCGCTC | 1 cut(s) | 1058 |
| BsrDI | GCAATG | 1 cut(s) | 618 |
| BsrFI | RCCGGY | 1 cut(s) | 1064 |
| BsrI | ACTGG | 1 cut(s) | 472 |
| BssAI | RCCGGY | 1 cut(s) | 1064 |
| BssECI | CCNNGG | 2 cut(s) | 43, 816 |
| BssMI | GATC | 3 cut(s) | 562, 784, 802 |
| BssT1I | CCWWGG | 2 cut(s) | 43, 816 |
| Bst2UI | CCWGG | 1 cut(s) | 951 |
| Bst4CI | ACNGT | 1 cut(s) | 434 |
| BstC8I | GCNNGC | 7 cut(s) | 58, 78, 366, 487, 491, 581, 689 |
| BstDEI | CTNAG | 5 cut(s) | 31, 213, 459, 807, 909 |
| BstF5I | GGATG | 7 cut(s) | 666, 707, 732, 778, 928, 936, 995 |
| BstFNI | CGCG | 1 cut(s) | 202 |
| BstKTI | GATC | 3 cut(s) | 565, 787, 805 |
| BstMAI | GTCTC | 2 cut(s) | 175, 301 |
| BstMBI | GATC | 3 cut(s) | 562, 784, 802 |
| BstMCI | CGRYCG | 1 cut(s) | 137 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 188, 693 |
| BstNI | CCWGG | 1 cut(s) | 951 |
| BstSCI | CCNGG | 3 cut(s) | 499, 757, 949 |
| BstSFI | CTRYAG | 4 cut(s) | 359, 796, 837, 942 |
| BstSLI | GKGCMC | 1 cut(s) | 266 |
| BstUI | CGCG | 1 cut(s) | 202 |
| BstV2I | GAAGAC | 2 cut(s) | 292, 539 |
| BstX2I | RGATCY | 1 cut(s) | 802 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1068 |
| BstYI | RGATCY | 1 cut(s) | 802 |
| BstZI | CGGCCG | 1 cut(s) | 134 |
| Bsu36I | CCTNAGG | 1 cut(s) | 807 |
| BsuRI | GGCC | 5 cut(s) | 136, 245, 427, 815, 916 |
| BtsCI | GGATG | 7 cut(s) | 666, 707, 732, 778, 928, 936, 995 |
| BtsIMutI | CAGTG | 3 cut(s) | 465, 633, 917 |
| Cac8I | GCNNGC | 7 cut(s) | 58, 78, 366, 487, 491, 581, 689 |
| CaiI | CAGNNNCTG | 2 cut(s) | 950, 1021 |
| Cfr10I | RCCGGY | 1 cut(s) | 1064 |
| Cfr13I | GGNCC | 1 cut(s) | 957 |
| CseI | GACGC | 2 cut(s) | 191, 318 |
| Csp6I | GTAC | 3 cut(s) | 446, 504, 850 |
| CviAII | CATG | 1 cut(s) | 348 |
| CviQI | GTAC | 3 cut(s) | 446, 504, 850 |
| DdeI | CTNAG | 5 cut(s) | 31, 213, 459, 807, 909 |
| DpnI | GATC | 3 cut(s) | 564, 786, 804 |
| DpnII | GATC | 3 cut(s) | 562, 784, 802 |
| EaeI | YGGCCR | 3 cut(s) | 134, 243, 914 |
| EagI | CGGCCG | 1 cut(s) | 134 |
| EclXI | CGGCCG | 1 cut(s) | 134 |
| Eco130I | CCWWGG | 2 cut(s) | 43, 816 |
| Eco47I | GGWCC | 1 cut(s) | 957 |
| Eco52I | CGGCCG | 1 cut(s) | 134 |
| Eco81I | CCTNAGG | 1 cut(s) | 807 |
| EcoRII | CCWGG | 1 cut(s) | 949 |
| EcoT14I | CCWWGG | 2 cut(s) | 43, 816 |
| EcoT22I | ATGCAT | 1 cut(s) | 928 |
| ErhI | CCWWGG | 2 cut(s) | 43, 816 |
| Esp3I | CGTCTC | 1 cut(s) | 301 |
| FaeI | CATG | 1 cut(s) | 351 |
| FaiI | YATR | 9 cut(s) | 125, 327, 349, 430, 647, 654, 698, 779, 798 |
| FaqI | GGGAC | 1 cut(s) | 365 |
| FatI | CATG | 1 cut(s) | 347 |
| FauI | CCCGC | 2 cut(s) | 93, 1063 |
| FokI | GGATG | 7 cut(s) | 653, 714, 739, 785, 923, 935, 1002 |
| FspBI | CTAG | 2 cut(s) | 44, 719 |
| GsaI | CCCAGC | 2 cut(s) | 674, 1072 |
| GsuI | CTGGAG | 1 cut(s) | 506 |
| HaeIII | GGCC | 5 cut(s) | 136, 245, 427, 815, 916 |
| HapII | CCGG | 4 cut(s) | 137, 501, 759, 1065 |
| HgaI | GACGC | 2 cut(s) | 191, 318 |
| Hin1II | CATG | 1 cut(s) | 351 |
| HinfI | GANTC | 3 cut(s) | 321, 638, 995 |
| HpaII | CCGG | 4 cut(s) | 137, 501, 759, 1065 |
| Hpy166II | GTNNAC | 1 cut(s) | 749 |
| Hpy188I | TCNGA | 6 cut(s) | 216, 234, 285, 438, 605, 904 |
| Hpy188III | TCNNGA | 5 cut(s) | 67, 172, 304, 523, 806 |
| Hpy8I | GTNNAC | 1 cut(s) | 749 |
| Hpy99I | CGWCG | 1 cut(s) | 178 |
| HpyAV | CCTTC | 3 cut(s) | 211, 764, 1037 |
| HpyCH4III | ACNGT | 1 cut(s) | 434 |
| HpyCH4IV | ACGT | 1 cut(s) | 297 |
| HpyCH4V | TGCA | 8 cut(s) | 361, 415, 479, 736, 839, 926, 932, 944 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 188, 693 |
| HpyF3I | CTNAG | 5 cut(s) | 31, 213, 459, 807, 909 |
| HpySE526I | ACGT | 1 cut(s) | 297 |
| Hsp92II | CATG | 1 cut(s) | 351 |
| Kzo9I | GATC | 3 cut(s) | 562, 784, 802 |
| LmnI | GCTCC | 3 cut(s) | 525, 952, 1063 |
| LweI | GCATC | 4 cut(s) | 675, 895, 913, 935 |
| MaeI | CTAG | 2 cut(s) | 44, 719 |
| MaeII | ACGT | 1 cut(s) | 297 |
| MaeIII | GTNAC | 2 cut(s) | 629, 761 |
| MalI | GATC | 3 cut(s) | 564, 786, 804 |
| MbiI | CCGCTC | 1 cut(s) | 1058 |
| MboI | GATC | 3 cut(s) | 562, 784, 802 |
| MboII | GAAGA | 6 cut(s) | 140, 292, 539, 784, 839, 842 |
| MfeI | CAATTG | 1 cut(s) | 480 |
| MflI | RGATCY | 1 cut(s) | 802 |
| MhlI | GDGCHC | 1 cut(s) | 266 |
| MlsI | TGGCCA | 1 cut(s) | 916 |
| MluCI | AATT | 2 cut(s) | 452, 480 |
| MluNI | TGGCCA | 1 cut(s) | 916 |
| Mox20I | TGGCCA | 1 cut(s) | 916 |
| Mph1103I | ATGCAT | 1 cut(s) | 928 |
| MscI | TGGCCA | 1 cut(s) | 916 |
| MseI | TTAA | 2 cut(s) | 333, 588 |
| MslI | CAYNNNNRTG | 3 cut(s) | 233, 410, 468 |
| Msp20I | TGGCCA | 1 cut(s) | 916 |
| MspA1I | CMGCKG | 1 cut(s) | 364 |
| MspI | CCGG | 4 cut(s) | 137, 501, 759, 1065 |
| MspR9I | CCNGG | 3 cut(s) | 501, 759, 951 |
| MunI | CAATTG | 1 cut(s) | 480 |
| MvaI | CCWGG | 1 cut(s) | 951 |
| MvnI | CGCG | 1 cut(s) | 202 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 188, 693 |
| NciI | CCSGG | 2 cut(s) | 501, 759 |
| NdeII | GATC | 3 cut(s) | 562, 784, 802 |
| NlaIII | CATG | 1 cut(s) | 351 |
| NlaIV | GGNNCC | 2 cut(s) | 265, 472 |
| NmuCI | GTSAC | 2 cut(s) | 629, 761 |
| NsiI | ATGCAT | 1 cut(s) | 928 |
| OliI | CACNNNNGTG | 1 cut(s) | 468 |
| PfeI | GAWTC | 3 cut(s) | 321, 638, 995 |
| PshBI | ATTAAT | 1 cut(s) | 333 |
| Psp6I | CCWGG | 1 cut(s) | 949 |
| PspFI | CCCAGC | 2 cut(s) | 670, 1068 |
| PspGI | CCWGG | 1 cut(s) | 949 |
| PspN4I | GGNNCC | 2 cut(s) | 265, 472 |
| PspPI | GGNCC | 1 cut(s) | 957 |
| PstI | CTGCAG | 3 cut(s) | 363, 841, 946 |
| PstNI | CAGNNNCTG | 2 cut(s) | 950, 1021 |
| PsuI | RGATCY | 1 cut(s) | 802 |
| PvuII | CAGCTG | 1 cut(s) | 364 |
| RsaI | GTAC | 3 cut(s) | 447, 505, 851 |
| RsaNI | GTAC | 3 cut(s) | 446, 504, 850 |
| RseI | CAYNNNNRTG | 3 cut(s) | 233, 410, 468 |
| SaqAI | TTAA | 2 cut(s) | 333, 588 |
| Sau3AI | GATC | 3 cut(s) | 562, 784, 802 |
| Sau96I | GGNCC | 1 cut(s) | 957 |
| ScrFI | CCNGG | 3 cut(s) | 501, 759, 951 |
| SduI | GDGCHC | 1 cut(s) | 266 |
| SetI | ASST | 8 cut(s) | 210, 300, 360, 366, 522, 598, 949, 1048 |
| SfaNI | GCATC | 4 cut(s) | 675, 895, 913, 935 |
| SfcI | CTRYAG | 4 cut(s) | 359, 796, 837, 942 |
| SinI | GGWCC | 1 cut(s) | 957 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 233, 410, 468 |
| Sse9I | AATT | 2 cut(s) | 452, 480 |
| SsiI | CCGC | 7 cut(s) | 86, 189, 192, 200, 246, 420, 1056 |
| SspMI | CTAG | 2 cut(s) | 44, 719 |
| StyD4I | CCNGG | 3 cut(s) | 499, 757, 949 |
| StyI | CCWWGG | 2 cut(s) | 43, 816 |
| TaaI | ACNGT | 1 cut(s) | 434 |
| TaiI | ACGT | 1 cut(s) | 300 |
| TaqI | TCGA | 2 cut(s) | 173, 846 |
| TaqII | GACCGA | 1 cut(s) | 575 |
| TasI | AATT | 2 cut(s) | 452, 480 |
| TatI | WGTACW | 1 cut(s) | 445 |
| TauI | GCSGC | 2 cut(s) | 194, 248 |
| TfiI | GAWTC | 3 cut(s) | 321, 638, 995 |
| Tru1I | TTAA | 2 cut(s) | 333, 588 |
| Tru9I | TTAA | 2 cut(s) | 333, 588 |
| TscAI | CASTG | 3 cut(s) | 472, 640, 917 |
| TseFI | GTSAC | 2 cut(s) | 629, 761 |
| Tsp45I | GTSAC | 2 cut(s) | 629, 761 |
| TspDTI | ATGAA | 1 cut(s) | 552 |
| TspGWI | ACGGA | 3 cut(s) | 32, 867, 935 |
| TspRI | CASTG | 3 cut(s) | 472, 640, 917 |
| VpaK11BI | GGWCC | 1 cut(s) | 957 |
| VspI | ATTAAT | 1 cut(s) | 333 |
| XapI | RAATTY | 1 cut(s) | 452 |
| XmaJI | CCTAGG | 1 cut(s) | 43 |
| XspI | CTAG | 2 cut(s) | 44, 719 |
| Zsp2I | ATGCAT | 1 cut(s) | 928 |