Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Forward (+)

49005449 .. 49008131

Gene Structure 2683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG377100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCGACGACCACTGCTGCTCCTCCACGTCAGCTCTCCCAGAAGGAGGCTGACATCCAGATGATGTTGGCCGCCGAGGTCCATCTCGGAACCAAGAACTGCGATTTCCAGATGGAGAGATACGTCTTCAAGCGCCGCAATGACGGTATTTACATTATCAACCTTGGGAAGACATGGGAAAAACTTCAGCTGGCTGCCAGGGTTATTGTTGCTATTGAAAACCCCAAGGACATCATTGTGCAGTCTGCAAGGCCTTACGGACAGAGGGCTGTCCTGAAATTTGCTCAGCACACTGGTGCTAATGCAATTGCCGGAAGGCACACTCCTGGTACATTTACCAATCAGCTCCAGACTTCATTCAATGAGCCCCGCCTTCTCATTTTGACCGACCCAAGGACTGATCACCAGCCAATTAAGGAAGCTGCTCTTGGAAACATTCCAACCATCGCCTTTTGTGATACTGATTCCCCCATGCGTTATGTTGACATTGGCATTCCAGCCAATAACAAGGGGAAGCACAGTATTGGATGCCTTTTCTGGTTGCTAGCAAGGATGGTTTTGCAGATGCGCGGTTCCCTTAGGCCAGGACATAAGTGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAGCCTGAGGAGGCCAAGCCACAGGAGGAGGAAGACGCAGTCCAAGCTCCAGAGTACATTGCAGATTATTCTGCTGGTCTTGGTGGTGATCAATGGCCTGCCCAAATTGCTGATGCTTCTTGGTCTACAGATGTGGCGGCCCCAGCTGGTGCTATTCCAGCAACTGCTGCTACCGGCTGGACTCCAGAACCAGGTTTCACTCGTCATCCCTGTTTATTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

283

Amino Acids

31.34

Weight (kDa)

6.17

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	22 - 115	9.8e-13	Ribosomal protein S2
Ribosomal_S2	PF00318	121 - 186	1.5e-11	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	752
AccII	CGCG	1 cut(s)	570
AciI	CCGC	5 cut(s)	72, 136, 370, 570, 764
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	2 cut(s)	331, 683
AfiI	CCNNNNNNNGG	3 cut(s)	46, 393, 818
AgsI	TTSAA	3 cut(s)	130, 218, 361
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	4 cut(s)	197, 325, 583, 817
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AleI	CACNNNNGTG	1 cut(s)	294
AluBI	AGCT	6 cut(s)	34, 190, 346, 422, 674, 773
AluI	AGCT	6 cut(s)	34, 190, 346, 422, 674, 773
AlwNI	CAGNNNCTG	1 cut(s)	791
AoxI	GGCC	6 cut(s)	69, 251, 581, 639, 722, 765
ApeKI	GCWGC	4 cut(s)	17, 194, 422, 794
ApoI	RAATTY	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	183
AspLEI	GCGC	2 cut(s)	135, 570
AspS9I	GGNCC	2 cut(s)	79, 766
AsuHPI	GGTGA	2 cut(s)	395, 725
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	79
AxyI	CCTNAGG	2 cut(s)	578, 633
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	3 cut(s)	118, 176, 666
BbvI	GCAGC	4 cut(s)	4, 181, 409, 781
BccI	CCATC	4 cut(s)	90, 106, 452, 547
BciT130I	CCWGG	4 cut(s)	199, 327, 585, 819
BclI	TGATCA	2 cut(s)	400, 715
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	2 cut(s)	622, 753
BfoI	RGCGCY	1 cut(s)	136
BisI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 765, 795
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	7 cut(s)	19, 73, 137, 196, 424, 766, 796
Bme1390I	CCNGG	4 cut(s)	199, 327, 585, 819
Bme18I	GGWCC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	79, 766
BmiI	GGNNCC	3 cut(s)	91, 574, 768
BmrFI	CCNGG	4 cut(s)	199, 327, 585, 819
BmsI	GCATC	3 cut(s)	518, 555, 730
BmtI	GCTAGC	1 cut(s)	548
BpiI	GAAGAC	3 cut(s)	118, 176, 666
BpmI	CTGGAG	3 cut(s)	332, 660, 795
Bpu1102I	GCTNAGC	1 cut(s)	285
BsaJI	CCNNGG	5 cut(s)	75, 163, 198, 225, 392
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 393, 818
Bse118I	RCCGGY	1 cut(s)	800
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	2 cut(s)	578, 633
Bse3DI	GCAATG	2 cut(s)	145, 684
BseBI	CCWGG	4 cut(s)	199, 327, 585, 819
BseDI	CCNNGG	5 cut(s)	75, 163, 198, 225, 392
BseGI	GGATG	5 cut(s)	54, 533, 558, 604, 832
BseLI	CCNNNNNNNGG	3 cut(s)	46, 393, 818
BseMI	GCAATG	2 cut(s)	145, 684
BseMII	CTCAG	2 cut(s)	299, 624
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	3 cut(s)	12, 650, 668
BseXI	GCAGC	4 cut(s)	4, 181, 409, 781
BseYI	CCCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	6 cut(s)	71, 253, 583, 641, 724, 767
BsiSI	CCGG	2 cut(s)	312, 801
BslI	CCNNNNNNNGG	3 cut(s)	46, 393, 818
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	6 cut(s)	71, 253, 583, 641, 724, 767
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	400, 715
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	5 cut(s)	72, 136, 370, 570, 764
BspANI	GGCC	6 cut(s)	71, 253, 583, 641, 724, 767
BspCNI	CTCAG	2 cut(s)	298, 625
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	3 cut(s)	91, 574, 768
BspOI	GCTAGC	1 cut(s)	548
BsrDI	GCAATG	2 cut(s)	145, 684
BsrFI	RCCGGY	1 cut(s)	800
BsrI	ACTGG	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	800
BssECI	CCNNGG	5 cut(s)	75, 163, 198, 225, 392
BssMI	GATC	2 cut(s)	400, 715
BssT1I	CCWWGG	3 cut(s)	163, 225, 392
Bst2UI	CCWGG	4 cut(s)	199, 327, 585, 819
Bst4CI	ACNGT	2 cut(s)	146, 521
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	3 cut(s)	192, 546, 726
BstDEI	CTNAG	3 cut(s)	285, 578, 633
BstF5I	GGATG	5 cut(s)	54, 533, 558, 604, 832
BstFNI	CGCG	1 cut(s)	570
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	135, 570
BstKTI	GATC	2 cut(s)	403, 718
BstMBI	GATC	2 cut(s)	400, 715
BstMWI	GCNNNNNNNGC	5 cut(s)	671, 734, 770, 785, 794
BstNI	CCWGG	4 cut(s)	199, 327, 585, 819
BstSCI	CCNGG	4 cut(s)	197, 325, 583, 817
BstSFI	CTRYAG	2 cut(s)	622, 753
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	4 cut(s)	4, 181, 409, 781
BstV2I	GAAGAC	3 cut(s)	118, 176, 666
Bsu36I	CCTNAGG	2 cut(s)	578, 633
BsuRI	GGCC	6 cut(s)	71, 253, 583, 641, 724, 767
BtgZI	GCGATG	1 cut(s)	430
BtrI	CACGTC	1 cut(s)	29
BtsCI	GGATG	5 cut(s)	54, 533, 558, 604, 832
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 291
Cac8I	GCNNGC	3 cut(s)	192, 546, 726
CaiI	CAGNNNCTG	1 cut(s)	791
CfoI	GCGC	2 cut(s)	135, 570
Cfr10I	RCCGGY	1 cut(s)	800
Cfr13I	GGNCC	2 cut(s)	79, 766
CseI	GACGC	1 cut(s)	671
CsiI	ACCWGGT	1 cut(s)	817
Csp6I	GTAC	2 cut(s)	330, 682
CviAII	CATG	3 cut(s)	174, 472, 604
CviQI	GTAC	2 cut(s)	330, 682
DdeI	CTNAG	3 cut(s)	285, 578, 633
DpnI	GATC	2 cut(s)	402, 717
DpnII	GATC	2 cut(s)	400, 715
EaeI	YGGCCR	1 cut(s)	69
Eco130I	CCWWGG	3 cut(s)	163, 225, 392
Eco147I	AGGCCT	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	170
Eco81I	CCTNAGG	2 cut(s)	578, 633
EcoRII	CCWGG	4 cut(s)	197, 325, 583, 817
EcoT14I	CCWWGG	3 cut(s)	163, 225, 392
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	3 cut(s)	163, 225, 392
FaeI	CATG	3 cut(s)	177, 475, 607
FaiI	YATR	6 cut(s)	175, 473, 480, 591, 605, 624
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	3 cut(s)	173, 471, 603
FauI	CCCGC	1 cut(s)	377
FbaI	TGATCA	2 cut(s)	400, 715
FblI	GTMKAC	1 cut(s)	752
Fnu4HI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 765, 795
FokI	GGATG	5 cut(s)	41, 540, 565, 611, 819
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 765, 795
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	2 cut(s)	134, 569
GluI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 765, 795
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	3 cut(s)	332, 660, 795
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	6 cut(s)	71, 253, 583, 641, 724, 767
HapII	CCGG	2 cut(s)	312, 801
HgaI	GACGC	1 cut(s)	671
HhaI	GCGC	2 cut(s)	135, 570
Hin1II	CATG	3 cut(s)	177, 475, 607
Hin6I	GCGC	2 cut(s)	133, 568
HinP1I	GCGC	2 cut(s)	133, 568
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	2 cut(s)	464, 808
HpaII	CCGG	2 cut(s)	312, 801
HphI	GGTGA	2 cut(s)	395, 725
Hpy166II	GTNNAC	2 cut(s)	484, 753
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	6 cut(s)	58, 109, 274, 349, 677, 812
Hpy8I	GTNNAC	2 cut(s)	484, 753
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	37, 309, 383
HpyCH4III	ACNGT	2 cut(s)	146, 521
HpyCH4IV	ACGT	2 cut(s)	28, 123
HpyCH4V	TGCA	5 cut(s)	241, 248, 305, 562, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	671, 734, 770, 785, 794
HpyF3I	CTNAG	3 cut(s)	285, 578, 633
HpySE526I	ACGT	2 cut(s)	28, 123
Hsp92II	CATG	3 cut(s)	177, 475, 607
HspAI	GCGC	2 cut(s)	133, 568
Ksp22I	TGATCA	2 cut(s)	400, 715
Kzo9I	GATC	2 cut(s)	400, 715
LmnI	GCTCC	3 cut(s)	25, 351, 679
Lsp1109I	GCAGC	4 cut(s)	4, 181, 409, 781
LweI	GCATC	3 cut(s)	518, 555, 730
MabI	ACCWGGT	1 cut(s)	817
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	2 cut(s)	28, 123
MalI	GATC	2 cut(s)	402, 717
MboI	GATC	2 cut(s)	400, 715
MboII	GAAGA	4 cut(s)	118, 181, 610, 671
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	4 cut(s)	278, 306, 411, 732
MlyI	GAGTC	1 cut(s)	802
MmeI	TCCRAC	1 cut(s)	464
MnlI	CCTC	8 cut(s)	33, 40, 70, 258, 628, 631, 646, 649
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	3 cut(s)	59, 236, 294
MspA1I	CMGCKG	2 cut(s)	190, 773
MspI	CCGG	2 cut(s)	312, 801
MspR9I	CCNGG	4 cut(s)	199, 327, 585, 819
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	4 cut(s)	199, 327, 585, 819
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	5 cut(s)	671, 734, 770, 785, 794
NdeII	GATC	2 cut(s)	400, 715
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	3 cut(s)	177, 475, 607
NlaIV	GGNNCC	3 cut(s)	91, 574, 768
NmeAIII	GCCGAG	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	253
PctI	GAATGC	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	464
PflFI	GACNNNGTC	1 cut(s)	665
PkrI	GCNGC	7 cut(s)	19, 73, 137, 196, 424, 766, 796
PleI	GAGTC	1 cut(s)	802
PpsI	GAGTC	1 cut(s)	802
Psp6I	CCWGG	4 cut(s)	197, 325, 583, 817
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	4 cut(s)	197, 325, 583, 817
PspN4I	GGNNCC	3 cut(s)	91, 574, 768
PspPI	GGNCC	2 cut(s)	79, 766
PstNI	CAGNNNCTG	1 cut(s)	791
PsyI	GACNNNGTC	1 cut(s)	665
PvuII	CAGCTG	2 cut(s)	190, 773
RsaI	GTAC	2 cut(s)	331, 683
RsaNI	GTAC	2 cut(s)	330, 682
RseI	CAYNNNNRTG	3 cut(s)	59, 236, 294
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 765, 795
Sau3AI	GATC	2 cut(s)	400, 715
Sau96I	GGNCC	2 cut(s)	79, 766
SchI	GAGTC	1 cut(s)	802
ScrFI	CCNGG	4 cut(s)	199, 327, 585, 819
SduI	GDGCHC	1 cut(s)	369
SexAI	ACCWGGT	1 cut(s)	817
SfaNI	GCATC	3 cut(s)	518, 555, 730
SfcI	CTRYAG	2 cut(s)	622, 753
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	3 cut(s)	59, 236, 294
Sse9I	AATT	4 cut(s)	278, 306, 411, 732
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	5 cut(s)	72, 136, 370, 570, 764
SspMI	CTAG	1 cut(s)	545
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	4 cut(s)	197, 325, 583, 817
StyI	CCWWGG	3 cut(s)	163, 225, 392
TaaI	ACNGT	2 cut(s)	146, 521
TaiI	ACGT	2 cut(s)	31, 126
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	4 cut(s)	278, 306, 411, 732
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	3 cut(s)	74, 138, 767
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	19, 298
TseI	GCWGC	4 cut(s)	17, 194, 422, 794
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	2 cut(s)	19, 298
Tth111I	GACNNNGTC	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	591
XmiI	GTMKAC	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.