Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Reverse (-)

1309273 .. 1311129

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGGCGAACGGAGTAGCGACGGCGGGACGTCAGGTATCAGAGAAAGAAGCTGATATCCAGATGATGTTATCAGCCGATGTTCACCTTGGTACCAAAAACTGCAACTATCAGATGGAGCGTTATGTCTTCAAAAGACGCGACGACGGTATTTACATAATCAATCTTGGAAAGACATGGGACAAGCTTCAGATGGCTGCTAGGGTTATTGTAGCAATCGAAAACCCAAAAGACATAATTGTTCAATCAGCCAGGCCTTATGGACAAAGAGCTGTCTTGAAGTTTGCTCAGTACACTGGTGTTAATGCGATTGCTGGAAGACACACTCCTGGTACTTTCACTAACCAAATGCAGACTTCTTTCAGTGAGCCTAGGTTGTTGATTCTCACCGACCCAAGAACCGACCATCAGCCAATCAAGGAAGGTGCTTTGGGAAACATTCCAACTATTGCCTTCTGTGACACGGATTCTCCAATGGGATTTGTCGACATTGGTATTCCTGCTAACAACAAGGGAAAACACAGCATTGGTTGCTTGTTCTGGCTTTTGGCTCGTATGGTTCTCCAAATGCGTGGAACCATTCTCGCAGCTCAGAAATGGGATGTCATGGTAAACTCTAGAAATACTATCAGGACTTGTGTTTCTCCAACACCAGACAAAGATCTTGACTTGTTTCTGTTGTGTAGGTGGATCTGTTTTTCTACAGGGAGCCCGAAGAAGCAAAGCAAGAGGGTGATGAAGAAGCTGAAGTACAGGCCGATTATGGAATGGTTGGTGGTGACCAGTGGACCACTGCTCAAATATCTGATGCTGCATGGTCTGGTGAAGTCGAACAGCCAATTTCTGCTGCACCTGCAGTTGGCGTTACCGTTGCTGCTGGATGGGAGGCTGCTTCTGTTCCAGCTGCTGGTTGGGAGTAAAAGCTCTCTTATTAGTTTAGCTCGAACTCGGTTAGATGTAGACCTGATTTTTTTGTTTTCGAGATTTGGAGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006970 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0055044 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

332

Amino Acids

37.3

Weight (kDa)

9.67

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	23 - 118	1.7e-12	Ribosomal protein S2
Ribosomal_S2	PF00318	121 - 187	3.6e-10	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	861
AatII	GACGTC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	861
Acc65I	GGTACC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	907
AccI	GTMKAC	2 cut(s)	486, 960
AccII	CGCG	1 cut(s)	141
AciI	CCGC	2 cut(s)	5, 26
AclWI	GGATC	1 cut(s)	698
AcuI	CTGAAG	2 cut(s)	173, 767
AcyI	GRCGYC	1 cut(s)	31
AfaI	GTAC	4 cut(s)	94, 293, 334, 752
AfiI	CCNNNNNNNGG	2 cut(s)	859, 907
AgsI	TTSAA	3 cut(s)	133, 245, 280
AjnI	CCWGG	2 cut(s)	251, 328
AluBI	AGCT	8 cut(s)	53, 187, 272, 590, 745, 904, 924, 941
AluI	AGCT	8 cut(s)	53, 187, 272, 590, 745, 904, 924, 941
AlwI	GGATC	1 cut(s)	698
AlwNI	CAGNNNCTG	1 cut(s)	907
AoxI	GGCC	2 cut(s)	254, 755
ApeKI	GCWGC	7 cut(s)	197, 587, 811, 847, 874, 889, 904
Asp718I	GGTACC	1 cut(s)	92
AspA2I	CCTAGG	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	788
AsuHPI	GGTGA	5 cut(s)	77, 379, 745, 790, 835
AvaII	GGWCC	1 cut(s)	788
AvrII	CCTAGG	1 cut(s)	371
BaeI	ACNNNNGTAYC	2 cut(s)	76, 109
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	713
BarI	GAAGNNNNNNTAC	2 cut(s)	734, 766
BbsI	GAAGAC	2 cut(s)	121, 325
BbvI	GCAGC	7 cut(s)	184, 599, 798, 834, 861, 876, 891
BccI	CCATC	4 cut(s)	109, 187, 414, 875
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	2 cut(s)	253, 330
BfaI	CTAG	3 cut(s)	201, 372, 618
BfmI	CTRYAG	2 cut(s)	702, 854
BfuAI	ACCTGC	1 cut(s)	861
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	8 cut(s)	6, 198, 588, 812, 848, 875, 890, 905
BlnI	CCTAGG	1 cut(s)	371
BlsI	GCNGC	8 cut(s)	7, 199, 589, 813, 849, 876, 891, 906
Bme1390I	CCNGG	2 cut(s)	253, 330
Bme18I	GGWCC	1 cut(s)	788
BmgT120I	GGNCC	1 cut(s)	788
BmiI	GGNNCC	3 cut(s)	94, 577, 710
BmrFI	CCNGG	2 cut(s)	253, 330
BmsI	GCATC	1 cut(s)	798
BpiI	GAAGAC	2 cut(s)	121, 325
BsaHI	GRCGYC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	88, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	859, 907
Bse1I	ACTGG	2 cut(s)	301, 783
BseBI	CCWGG	2 cut(s)	253, 330
BseDI	CCNNGG	2 cut(s)	88, 371
BseGI	GGATG	2 cut(s)	607, 886
BseLI	CCNNNNNNNGG	2 cut(s)	859, 907
BseMII	CTCAG	2 cut(s)	302, 605
BseNI	ACTGG	2 cut(s)	301, 783
BseXI	GCAGC	7 cut(s)	184, 599, 798, 834, 861, 876, 891
BsgI	GTGCAG	1 cut(s)	833
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	256, 757
BshNI	GGYRCC	1 cut(s)	92
BslFI	GGGAC	2 cut(s)	42, 194
BslI	CCNNNNNNNGG	2 cut(s)	859, 907
BsmFI	GGGAC	2 cut(s)	42, 194
BsnI	GGCC	2 cut(s)	256, 757
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp143I	GATC	2 cut(s)	661, 690
BspACI	CCGC	2 cut(s)	5, 26
BspANI	GGCC	2 cut(s)	256, 757
BspCNI	CTCAG	2 cut(s)	301, 604
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	94, 577, 710
BspMAI	CTGCAG	1 cut(s)	858
BspMI	ACCTGC	1 cut(s)	861
BspPI	GGATC	1 cut(s)	698
BspT107I	GGYRCC	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	301, 783
BssECI	CCNNGG	2 cut(s)	88, 371
BssMI	GATC	2 cut(s)	661, 690
BssNI	GRCGYC	1 cut(s)	31
BssT1I	CCWWGG	2 cut(s)	88, 371
Bst2UI	CCWGG	2 cut(s)	253, 330
Bst4CI	ACNGT	2 cut(s)	149, 870
BstACI	GRCGYC	1 cut(s)	31
BstAPI	GCANNNNNTGC	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	288, 591
BstEII	GGTNACC	1 cut(s)	778
BstF5I	GGATG	2 cut(s)	607, 886
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	2 cut(s)	664, 693
BstMBI	GATC	2 cut(s)	661, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	531, 853
BstNI	CCWGG	2 cut(s)	253, 330
BstPI	GGTNACC	1 cut(s)	778
BstSCI	CCNGG	2 cut(s)	251, 328
BstSFI	CTRYAG	2 cut(s)	702, 854
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	7 cut(s)	184, 599, 798, 834, 861, 876, 891
BstV2I	GAAGAC	2 cut(s)	121, 325
BstX2I	RGATCY	2 cut(s)	661, 690
BstXI	CCANNNNNNTGG	1 cut(s)	572
BstYI	RGATCY	2 cut(s)	661, 690
BsuRI	GGCC	2 cut(s)	256, 757
BtsCI	GGATG	2 cut(s)	607, 886
BtsI	GCAGTG	1 cut(s)	791
BtsIMutI	CAGTG	4 cut(s)	294, 370, 790, 791
BveI	ACCTGC	1 cut(s)	861
CaiI	CAGNNNCTG	1 cut(s)	907
Cfr13I	GGNCC	1 cut(s)	788
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	4 cut(s)	93, 292, 333, 751
CviAII	CATG	3 cut(s)	177, 607, 815
CviQI	GTAC	4 cut(s)	93, 292, 333, 751
DdeI	CTNAG	2 cut(s)	288, 591
DpnI	GATC	2 cut(s)	663, 692
DpnII	GATC	2 cut(s)	661, 690
Eco130I	CCWWGG	2 cut(s)	88, 371
Eco147I	AGGCCT	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	713
Eco32I	GATATC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	788
Eco57I	CTGAAG	2 cut(s)	173, 767
Eco91I	GGTNACC	1 cut(s)	778
EcoO65I	GGTNACC	1 cut(s)	778
EcoRII	CCWGG	2 cut(s)	251, 328
EcoRV	GATATC	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	88, 371
EcoT38I	GRGCYC	1 cut(s)	713
ErhI	CCWWGG	2 cut(s)	88, 371
FaeI	CATG	3 cut(s)	180, 610, 818
FaiI	YATR	9 cut(s)	126, 158, 178, 236, 261, 557, 608, 764, 816
FaqI	GGGAC	2 cut(s)	42, 194
FatI	CATG	3 cut(s)	176, 606, 814
FauI	CCCGC	1 cut(s)	19
FblI	GTMKAC	2 cut(s)	486, 960
Fnu4HI	GCNGC	8 cut(s)	6, 198, 588, 812, 848, 875, 890, 905
FokI	GGATG	2 cut(s)	614, 893
FriOI	GRGCYC	1 cut(s)	713
Fsp4HI	GCNGC	8 cut(s)	6, 198, 588, 812, 848, 875, 890, 905
FspBI	CTAG	3 cut(s)	201, 372, 618
GluI	GCNGC	8 cut(s)	6, 198, 588, 812, 848, 875, 890, 905
HaeIII	GGCC	2 cut(s)	256, 757
HgaI	GACGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	180, 610, 818
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	2 cut(s)	382, 467
HphI	GGTGA	5 cut(s)	77, 379, 745, 790, 835
Hpy166II	GTNNAC	6 cut(s)	85, 294, 487, 613, 788, 961
Hpy188I	TCNGA	5 cut(s)	43, 114, 192, 594, 807
Hpy188III	TCNNGA	6 cut(s)	61, 277, 618, 631, 665, 981
Hpy8I	GTNNAC	6 cut(s)	85, 294, 487, 613, 788, 961
Hpy99I	CGWCG	3 cut(s)	25, 146, 149
HpyAV	CCTTC	2 cut(s)	416, 463
HpyCH4III	ACNGT	2 cut(s)	149, 870
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	5 cut(s)	105, 352, 814, 850, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	531, 853
HpyF3I	CTNAG	2 cut(s)	288, 591
HpySE526I	ACGT	1 cut(s)	31
Hsp92I	GRCGYC	1 cut(s)	31
Hsp92II	CATG	3 cut(s)	180, 610, 818
KpnI	GGTACC	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	661, 690
LmnI	GCTCC	2 cut(s)	118, 708
Lsp1109I	GCAGC	7 cut(s)	184, 599, 798, 834, 861, 876, 891
LweI	GCATC	1 cut(s)	798
MaeI	CTAG	3 cut(s)	201, 372, 618
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	3 cut(s)	458, 778, 864
MalI	GATC	2 cut(s)	663, 692
MboI	GATC	2 cut(s)	661, 690
MboII	GAAGA	4 cut(s)	121, 330, 727, 751
MflI	RGATCY	2 cut(s)	661, 690
MhlI	GDGCHC	1 cut(s)	713
MluCI	AATT	2 cut(s)	237, 839
MmeI	TCCRAC	2 cut(s)	467, 671
MnlI	CCTC	3 cut(s)	723, 879, 985
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	904
MspR9I	CCNGG	2 cut(s)	253, 330
MvaI	CCWGG	2 cut(s)	253, 330
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	531, 853
NdeII	GATC	2 cut(s)	661, 690
NlaIII	CATG	3 cut(s)	180, 610, 818
NlaIV	GGNNCC	3 cut(s)	94, 577, 710
NmuCI	GTSAC	2 cut(s)	458, 778
PaqCI	CACCTGC	1 cut(s)	861
PceI	AGGCCT	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	382, 467
PflMI	CCANNNNNTGG	1 cut(s)	907
PkrI	GCNGC	8 cut(s)	7, 199, 589, 813, 849, 876, 891, 906
Psp6I	CCWGG	2 cut(s)	251, 328
PspEI	GGTNACC	1 cut(s)	778
PspGI	CCWGG	2 cut(s)	251, 328
PspN4I	GGNNCC	3 cut(s)	94, 577, 710
PspPI	GGNCC	1 cut(s)	788
PstI	CTGCAG	1 cut(s)	858
PstNI	CAGNNNCTG	1 cut(s)	907
PsuI	RGATCY	2 cut(s)	661, 690
PvuII	CAGCTG	1 cut(s)	904
RsaI	GTAC	4 cut(s)	94, 293, 334, 752
RsaNI	GTAC	4 cut(s)	93, 292, 333, 751
SalI	GTCGAC	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	8 cut(s)	6, 198, 588, 812, 848, 875, 890, 905
Sau3AI	GATC	2 cut(s)	661, 690
Sau96I	GGNCC	1 cut(s)	788
ScrFI	CCNGG	2 cut(s)	253, 330
SduI	GDGCHC	1 cut(s)	713
SfaNI	GCATC	1 cut(s)	798
SfcI	CTRYAG	2 cut(s)	702, 854
SinI	GGWCC	1 cut(s)	788
Sse9I	AATT	2 cut(s)	237, 839
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	2 cut(s)	5, 26
SspMI	CTAG	3 cut(s)	201, 372, 618
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	2 cut(s)	251, 328
StyI	CCWWGG	2 cut(s)	88, 371
TaaI	ACNGT	2 cut(s)	149, 870
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	5 cut(s)	219, 486, 830, 943, 980
TasI	AATT	2 cut(s)	237, 839
TatI	WGTACW	2 cut(s)	291, 750
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	382, 467
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	4 cut(s)	301, 370, 790, 798
TseFI	GTSAC	2 cut(s)	458, 778
TseI	GCWGC	7 cut(s)	197, 587, 811, 847, 874, 889, 904
Tsp45I	GTSAC	2 cut(s)	458, 778
TspDTI	ATGAA	1 cut(s)	752
TspGWI	ACGGA	2 cut(s)	27, 479
TspRI	CASTG	4 cut(s)	301, 370, 790, 798
Van91I	CCANNNNNTGG	1 cut(s)	907
VpaK11BI	GGWCC	1 cut(s)	788
XbaI	TCTAGA	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	908
XmaJI	CCTAGG	1 cut(s)	371
XmiI	GTMKAC	2 cut(s)	486, 960
XspI	CTAG	3 cut(s)	201, 372, 618
ZraI	GACGTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.