Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Forward (+)

29363484 .. 29365942

Gene Structure 2459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1165200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGACCACCACCGCCGCGGCTCCGCGTCAGCTCTCTCAGAAGGAGGCTGACATCCAGATGATGTTGGCCGCCGAAGTCCACCTCGGTACCAAAAACTGTGATTTCCAGATGGAAAGATACGTCTTCAAGCGCCGCAATGATGGGATTTACATTATCAATCTTGGAAAAACTTGGGACAAGCTTCAGATGGCTGCCAGGGTGATTGTTGCGATTGAGAATCCCAAGGATATCATTGTACAATCAGCAAGGCCCTATGGTCAGAGGGCTGTCCTGAAATTCGCTCAGCACACTGGCGCTAATGCTATTGCTGGAAGGCACACGCCAGGTACTTTCACAAATCAGCTCCAGACGTCGTTCAATGAGCCCCGTCTCCTCATTCTGACTGACCCACGAACTGACGCTCAGCCAATTAAGGAGGCTGCTTTGGGAAACATACCAACCATTGCTTTCTGTGATACTGATTCCCCTATGCGTTATGTTGATATTGGCATCCCTGCCAATAACAAGGGTAAGCACAGCATTGGATGTCTTTTCTGGCTCCTAGCAAGGATGGTTTTGCAGATGCGTGGCTCTCTCCGTCCTGGGCATAAGTGGGATGTCATGGTTGATCTTTTCTTCTACAGAGACCCCGAGGAGGCCAAGGAAAAGGAAGATGAAGATGTTCCTCAAATCCCAGATTATGGAACTGCAGATTATGTTGCACCTGGTATTGTCGGGGCTGATCAATGGCCTCCCCAAGTTTCTGATGCTCCTTGGCCAACAGATGCCACTACAACTATCCCGGCTCCTGTTGTTGGCTGGACCGCAGAACCAGGCGCAGTAGGGGCAGAGTGGGATTCGGTTCCTCCAACACAAATCCCTGCTTCCGCGGTTGAAGGTGTCGTTCCTCCTCCTCCTAGTGGCTGGGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

306

Amino Acids

33.51

Weight (kDa)

5.19

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	22 - 115	9.9e-13	Ribosomal protein S2
Ribosomal_S2	PF00318	121 - 186	4.7e-11	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	356
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccII	CGCG	3 cut(s)	20, 28, 872
AciI	CCGC	9 cut(s)	15, 18, 20, 26, 72, 136, 807, 870, 872
AcoI	YGGCCR	2 cut(s)	69, 758
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	3 cut(s)	91, 240, 331
AfiI	CCNNNNNNNGG	4 cut(s)	637, 683, 797, 902
AgsI	TTSAA	3 cut(s)	130, 361, 878
AjnI	CCWGG	5 cut(s)	197, 325, 583, 706, 814
AluBI	AGCT	3 cut(s)	34, 184, 346
AluI	AGCT	3 cut(s)	34, 184, 346
Alw26I	GTCTC	2 cut(s)	377, 621
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	5 cut(s)	69, 251, 639, 731, 758
ApeKI	GCWGC	2 cut(s)	194, 422
ApoI	RAATTY	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	663
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	3 cut(s)	135, 299, 821
AspS9I	GGNCC	2 cut(s)	252, 804
AsuC2I	CCSGG	1 cut(s)	785
AsuHPI	GGTGA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	804
BaeI	ACNNNNGTAYC	2 cut(s)	73, 106
BalI	TGGCCA	1 cut(s)	760
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	181, 409
BccI	CCATC	4 cut(s)	106, 137, 184, 547
BciT130I	CCWGG	5 cut(s)	199, 327, 585, 708, 816
BclI	TGATCA	1 cut(s)	724
BcnI	CCSGG	1 cut(s)	785
BcoDI	GTCTC	2 cut(s)	377, 621
BfaI	CTAG	2 cut(s)	545, 900
BfmI	CTRYAG	2 cut(s)	622, 690
BfoI	RGCGCY	2 cut(s)	136, 300
BisI	GCNGC	6 cut(s)	18, 21, 72, 136, 195, 423
BlpI	GCTNAGC	2 cut(s)	285, 405
BlsI	GCNGC	6 cut(s)	19, 22, 73, 137, 196, 424
Bme1390I	CCNGG	6 cut(s)	199, 327, 585, 708, 785, 816
Bme18I	GGWCC	1 cut(s)	804
BmeT110I	CYCGRG	1 cut(s)	632
BmgT120I	GGNCC	2 cut(s)	252, 804
BmiI	GGNNCC	5 cut(s)	24, 91, 542, 789, 846
BmrFI	CCNGG	6 cut(s)	199, 327, 585, 708, 785, 816
BmsI	GCATC	4 cut(s)	501, 555, 739, 757
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	332
Bpu1102I	GCTNAGC	2 cut(s)	285, 405
BpuMI	CCSGG	1 cut(s)	785
BsaHI	GRCGYC	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	621
BsaJI	CCNNGG	9 cut(s)	18, 85, 198, 225, 584, 633, 642, 755, 870
Bsc4I	CCNNNNNNNGG	4 cut(s)	637, 683, 797, 902
Bse1I	ACTGG	1 cut(s)	298
Bse3DI	GCAATG	2 cut(s)	145, 444
BseBI	CCWGG	5 cut(s)	199, 327, 585, 708, 816
BseDI	CCNNGG	9 cut(s)	18, 85, 198, 225, 584, 633, 642, 755, 870
BseGI	GGATG	5 cut(s)	54, 492, 533, 558, 604
BseLI	CCNNNNNNNGG	4 cut(s)	637, 683, 797, 902
BseMI	GCAATG	2 cut(s)	145, 444
BseMII	CTCAG	3 cut(s)	53, 299, 419
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	4 cut(s)	365, 650, 882, 885
BseXI	GCAGC	2 cut(s)	181, 409
BseYI	CCCAGC	1 cut(s)	906
Bsh1236I	CGCG	3 cut(s)	20, 28, 872
BshFI	GGCC	5 cut(s)	71, 253, 641, 733, 760
BshNI	GGYRCC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	1 cut(s)	785
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	4 cut(s)	637, 683, 797, 902
BsmAI	GTCTC	2 cut(s)	377, 621
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	5 cut(s)	71, 253, 641, 733, 760
Bso31I	GGTCTC	1 cut(s)	621
BsoBI	CYCGRG	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	610, 724
Bsp1720I	GCTNAGC	2 cut(s)	285, 405
BspACI	CCGC	9 cut(s)	15, 18, 20, 26, 72, 136, 807, 870, 872
BspANI	GGCC	5 cut(s)	71, 253, 641, 733, 760
BspCNI	CTCAG	3 cut(s)	52, 298, 418
BspFNI	CGCG	3 cut(s)	20, 28, 872
BspLI	GGNNCC	5 cut(s)	24, 91, 542, 789, 846
BspMAI	CTGCAG	1 cut(s)	694
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	621
BsrDI	GCAATG	2 cut(s)	145, 444
BsrGI	TGTACA	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	9 cut(s)	18, 85, 198, 225, 584, 633, 642, 755, 870
BssMI	GATC	2 cut(s)	610, 724
BssNI	GRCGYC	1 cut(s)	353
BssT1I	CCWWGG	3 cut(s)	225, 642, 755
Bst2UI	CCWGG	5 cut(s)	199, 327, 585, 708, 816
Bst4CI	ACNGT	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	238
BstDEI	CTNAG	3 cut(s)	39, 285, 405
BstDSI	CCRYGG	2 cut(s)	18, 870
BstF5I	GGATG	5 cut(s)	54, 492, 533, 558, 604
BstFNI	CGCG	3 cut(s)	20, 28, 872
BstH2I	RGCGCY	2 cut(s)	136, 300
BstHHI	GCGC	3 cut(s)	135, 299, 821
BstKTI	GATC	2 cut(s)	613, 727
BstMAI	GTCTC	2 cut(s)	377, 621
BstMBI	GATC	2 cut(s)	610, 724
BstMWI	GCNNNNNNNGC	1 cut(s)	827
BstNI	CCWGG	5 cut(s)	199, 327, 585, 708, 816
BstSCI	CCNGG	6 cut(s)	197, 325, 583, 706, 783, 814
BstSFI	CTRYAG	2 cut(s)	622, 690
BstUI	CGCG	3 cut(s)	20, 28, 872
BstV1I	GCAGC	2 cut(s)	181, 409
BstV2I	GAAGAC	1 cut(s)	118
BsuRI	GGCC	5 cut(s)	71, 253, 641, 733, 760
BtgI	CCRYGG	2 cut(s)	18, 870
BtsCI	GGATG	5 cut(s)	54, 492, 533, 558, 604
BtsIMutI	CAGTG	1 cut(s)	291
CfoI	GCGC	3 cut(s)	135, 299, 821
Cfr13I	GGNCC	2 cut(s)	252, 804
Cfr42I	CCGCGG	2 cut(s)	21, 873
CseI	GACGC	2 cut(s)	17, 410
CsiI	ACCWGGT	1 cut(s)	706
Csp6I	GTAC	3 cut(s)	90, 239, 330
CviAII	CATG	1 cut(s)	604
CviQI	GTAC	3 cut(s)	90, 239, 330
DdeI	CTNAG	3 cut(s)	39, 285, 405
DpnI	GATC	2 cut(s)	612, 726
DpnII	GATC	2 cut(s)	610, 724
EaeI	YGGCCR	2 cut(s)	69, 758
Eco130I	CCWWGG	3 cut(s)	225, 642, 755
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	621
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	804
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	5 cut(s)	197, 325, 583, 706, 814
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	3 cut(s)	225, 642, 755
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	3 cut(s)	225, 642, 755
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	1 cut(s)	607
FaiI	YATR	9 cut(s)	258, 437, 473, 480, 591, 605, 684, 699, 916
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	603
FbaI	TGATCA	1 cut(s)	724
Fnu4HI	GCNGC	6 cut(s)	18, 21, 72, 136, 195, 423
FokI	GGATG	5 cut(s)	41, 479, 540, 565, 611
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	6 cut(s)	18, 21, 72, 136, 195, 423
FspBI	CTAG	2 cut(s)	545, 900
GlaI	GCGC	3 cut(s)	134, 298, 820
GluI	GCNGC	6 cut(s)	18, 21, 72, 136, 195, 423
GsaI	CCCAGC	1 cut(s)	910
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	2 cut(s)	136, 300
HaeIII	GGCC	5 cut(s)	71, 253, 641, 733, 760
HapII	CCGG	1 cut(s)	785
HgaI	GACGC	2 cut(s)	17, 410
HhaI	GCGC	3 cut(s)	135, 299, 821
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	607
Hin6I	GCGC	3 cut(s)	133, 297, 819
HinP1I	GCGC	3 cut(s)	133, 297, 819
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	3 cut(s)	220, 464, 839
HpaII	CCGG	1 cut(s)	785
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	5 cut(s)	42, 189, 264, 384, 748
Hpy188III	TCNNGA	4 cut(s)	58, 109, 274, 349
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	358
HpyAV	CCTTC	3 cut(s)	37, 309, 872
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	2 cut(s)	123, 353
HpyCH4V	TGCA	3 cut(s)	562, 692, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	827
HpyF3I	CTNAG	3 cut(s)	39, 285, 405
HpySE526I	ACGT	2 cut(s)	123, 353
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	607
HspAI	GCGC	3 cut(s)	133, 297, 819
KpnI	GGTACC	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	724
KspI	CCGCGG	2 cut(s)	21, 873
Kzo9I	GATC	2 cut(s)	610, 724
LmnI	GCTCC	5 cut(s)	28, 351, 546, 757, 793
Lsp1109I	GCAGC	2 cut(s)	181, 409
LweI	GCATC	4 cut(s)	501, 555, 739, 757
MabI	ACCWGGT	1 cut(s)	706
MaeI	CTAG	2 cut(s)	545, 900
MaeII	ACGT	2 cut(s)	123, 353
MalI	GATC	2 cut(s)	612, 726
MboI	GATC	2 cut(s)	610, 724
MboII	GAAGA	4 cut(s)	118, 610, 665, 671
MhlI	GDGCHC	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	760
MluCI	AATT	3 cut(s)	278, 411, 911
MluNI	TGGCCA	1 cut(s)	760
MmeI	TCCRAC	1 cut(s)	875
Mox20I	TGGCCA	1 cut(s)	760
MroXI	GAANNNNTTC	1 cut(s)	663
MscI	TGGCCA	1 cut(s)	760
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	760
MspA1I	CMGCKG	2 cut(s)	20, 872
MspI	CCGG	1 cut(s)	785
MspR9I	CCNGG	6 cut(s)	199, 327, 585, 708, 785, 816
MvaI	CCWGG	5 cut(s)	199, 327, 585, 708, 816
MvnI	CGCG	3 cut(s)	20, 28, 872
MwoI	GCNNNNNNNGC	1 cut(s)	827
NciI	CCSGG	1 cut(s)	785
NdeII	GATC	2 cut(s)	610, 724
NlaIII	CATG	1 cut(s)	607
NlaIV	GGNNCC	5 cut(s)	24, 91, 542, 789, 846
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	3 cut(s)	220, 464, 839
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	6 cut(s)	19, 22, 73, 137, 196, 424
Psp6I	CCWGG	5 cut(s)	197, 325, 583, 706, 814
PspFI	CCCAGC	1 cut(s)	906
PspGI	CCWGG	5 cut(s)	197, 325, 583, 706, 814
PspN4I	GGNNCC	5 cut(s)	24, 91, 542, 789, 846
PspPI	GGNCC	2 cut(s)	252, 804
PstI	CTGCAG	1 cut(s)	694
RsaI	GTAC	3 cut(s)	91, 240, 331
RsaNI	GTAC	3 cut(s)	90, 239, 330
RseI	CAYNNNNRTG	1 cut(s)	59
SacII	CCGCGG	2 cut(s)	21, 873
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	6 cut(s)	18, 21, 72, 136, 195, 423
Sau3AI	GATC	2 cut(s)	610, 724
Sau96I	GGNCC	2 cut(s)	252, 804
ScrFI	CCNGG	6 cut(s)	199, 327, 585, 708, 785, 816
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	9 cut(s)	36, 87, 126, 186, 331, 348, 356, 709, 883
SexAI	ACCWGGT	1 cut(s)	706
SfaNI	GCATC	4 cut(s)	501, 555, 739, 757
SfcI	CTRYAG	2 cut(s)	622, 690
Sfr303I	CCGCGG	2 cut(s)	21, 873
SgrBI	CCGCGG	2 cut(s)	21, 873
SinI	GGWCC	1 cut(s)	804
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	3 cut(s)	278, 411, 911
SsiI	CCGC	9 cut(s)	15, 18, 20, 26, 72, 136, 807, 870, 872
SspMI	CTAG	2 cut(s)	545, 900
StyD4I	CCNGG	6 cut(s)	197, 325, 583, 706, 783, 814
StyI	CCWWGG	3 cut(s)	225, 642, 755
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	2 cut(s)	126, 356
TasI	AATT	3 cut(s)	278, 411, 911
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	4 cut(s)	20, 23, 74, 138
TfiI	GAWTC	3 cut(s)	220, 464, 839
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	2 cut(s)	194, 422
TspDTI	ATGAA	1 cut(s)	672
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	804
XapI	RAATTY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	2 cut(s)	545, 900
ZraI	GACGTC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.