Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Forward (+)

62727834 .. 62730037

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGACGACAACCGCCGCTCCTCCACGTCAGCTCTCGCAGAAGGAGGCCGACATCCAGATGATGTTGGCCGCCGAGGTCCATCTCGGCACCAAAAACTGCGACTTTCAGATGGAGCGTTACGTCTTCAAGCGCCGCAACGATGGGATTTATATTATCAATCTTGGAAAGACATGGGAGAAACTTCAGCTAGCTGCTAGGGTGATTGTTGCTATTGAAAACCCCAAGGACATCATTGTGCAGTCCGCCAGGCCTTATGGGCAGAGGGCTGTCCTCAAGTTTGCTCAGCACACTGGTGCTAATGCCATTGCCGGAAGGCACACTCCCGGTACTTTCACCAACCAGCTTCAGACTTCCTTCAACGAGCCCCGGCTCCTCATCTTGACTGACCCAAGAACTGATCACCAGCCAATTAAGGAAGCTGCTCTTGGGAACATTCCCACCATTGCTTTCTGCGATACTGATTCACCCATGCGTTATGTTGACATTGGCATTCCGGCCAATAATAAGGGGAAGCACAGTATTGGATGTCTTTTCTGGTTGCTGGCAAGGATGGTTTTGCAAATGCGCGGTTCCGTTAGGCCAGGACATAAGTGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAGCCTGAGGAGGCCAAGCAACAAGAGGAGGAAGAAGCGGTGCAAGCTCCAGAGTACATTGAATATTCTGGTGGTCTTGGTGGCGATCAGTGGCCTTCCCAAATTGCTGATGCTTCTTGGTCTGCTGATGCAGCCCCAGCAATCCCAGCAGTTCCTGCTGCTGGCTGGACTGCAGAACCAGGTTTCACTGCTACCCTTTTCTTTGTTGTGCTAGCACCATTGTACTTGCCTGTATTTTATCGTCTCTGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

294

Amino Acids

32.64

Weight (kDa)

6.18

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	22 - 115	1.1e-12	Ribosomal protein S2
Ribosomal_S2	PF00318	121 - 186	1.6e-11	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	570
AciI	CCGC	7 cut(s)	15, 18, 72, 136, 246, 570, 665
AcoI	YGGCCR	2 cut(s)	69, 498
AcuI	CTGAAG	2 cut(s)	170, 332
AfaI	GTAC	3 cut(s)	331, 683, 851
AfiI	CCNNNNNNNGG	1 cut(s)	788
AgsI	TTSAA	4 cut(s)	130, 218, 361, 689
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	3 cut(s)	248, 583, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AleI	CACNNNNGTG	1 cut(s)	294
AluBI	AGCT	6 cut(s)	34, 190, 194, 346, 422, 674
AluI	AGCT	6 cut(s)	34, 190, 194, 346, 422, 674
Alw26I	GTCTC	1 cut(s)	875
AlwNI	CAGNNNCTG	1 cut(s)	782
AoxI	GGCC	7 cut(s)	48, 69, 251, 498, 581, 639, 719
ApeKI	GCWGC	4 cut(s)	194, 422, 758, 785
AspLEI	GCGC	2 cut(s)	135, 570
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	2 cut(s)	327, 370
AsuHPI	GGTGA	4 cut(s)	214, 328, 395, 459
AsuNHI	GCTAGC	2 cut(s)	190, 838
AvaII	GGWCC	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	181, 409, 770, 772
BccI	CCATC	4 cut(s)	90, 106, 137, 547
BciT130I	CCWGG	3 cut(s)	250, 585, 807
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	2 cut(s)	327, 370
BcoDI	GTCTC	1 cut(s)	875
BfaI	CTAG	4 cut(s)	191, 198, 839, 880
BfmI	CTRYAG	2 cut(s)	622, 798
BfoI	RGCGCY	1 cut(s)	136
BglI	GCCNNNNNGGC	1 cut(s)	259
BisI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 759, 786
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	7 cut(s)	19, 73, 137, 196, 424, 760, 787
Bme1390I	CCNGG	5 cut(s)	250, 327, 370, 585, 807
Bme18I	GGWCC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	3 cut(s)	91, 374, 574
BmrFI	CCNGG	5 cut(s)	250, 327, 370, 585, 807
BmsI	GCATC	2 cut(s)	727, 745
BmtI	GCTAGC	2 cut(s)	194, 842
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	660
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	2 cut(s)	327, 370
BsaJI	CCNNGG	3 cut(s)	75, 225, 368
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	788
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	1 cut(s)	633
Bse3DI	GCAATG	2 cut(s)	306, 444
BseBI	CCWGG	3 cut(s)	250, 585, 807
BseDI	CCNNGG	3 cut(s)	75, 225, 368
BseGI	GGATG	4 cut(s)	54, 533, 558, 604
BseLI	CCNNNNNNNGG	1 cut(s)	788
BseMI	GCAATG	2 cut(s)	306, 444
BseMII	CTCAG	2 cut(s)	299, 624
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	4 cut(s)	12, 365, 650, 668
BseXI	GCAGC	4 cut(s)	181, 409, 770, 772
BseYI	CCCAGC	2 cut(s)	763, 772
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	7 cut(s)	50, 71, 253, 500, 583, 641, 721
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	4 cut(s)	312, 327, 370, 497
BslI	CCNNNNNNNGG	1 cut(s)	788
BsmAI	GTCTC	1 cut(s)	875
BsmBI	CGTCTC	1 cut(s)	875
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	7 cut(s)	50, 71, 253, 500, 583, 641, 721
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	400, 712
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	7 cut(s)	15, 18, 72, 136, 246, 570, 665
BspANI	GGCC	7 cut(s)	50, 71, 253, 500, 583, 641, 721
BspCNI	CTCAG	2 cut(s)	298, 625
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	3 cut(s)	91, 374, 574
BspMAI	CTGCAG	1 cut(s)	802
BspOI	GCTAGC	2 cut(s)	194, 842
BspT107I	GGYRCC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	20
BsrDI	GCAATG	2 cut(s)	306, 444
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	3 cut(s)	75, 225, 368
BssMI	GATC	2 cut(s)	400, 712
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	3 cut(s)	250, 585, 807
Bst4CI	ACNGT	1 cut(s)	521
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	5 cut(s)	192, 546, 672, 790, 840
BstDEI	CTNAG	2 cut(s)	285, 633
BstF5I	GGATG	4 cut(s)	54, 533, 558, 604
BstFNI	CGCG	1 cut(s)	570
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	135, 570
BstKTI	GATC	2 cut(s)	403, 715
BstMAI	GTCTC	1 cut(s)	875
BstMBI	GATC	2 cut(s)	400, 712
BstMWI	GCNNNNNNNGC	6 cut(s)	259, 671, 758, 764, 773, 782
BstNI	CCWGG	3 cut(s)	250, 585, 807
BstSCI	CCNGG	5 cut(s)	248, 325, 368, 583, 805
BstSFI	CTRYAG	2 cut(s)	622, 798
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	4 cut(s)	181, 409, 770, 772
BstV2I	GAAGAC	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	7 cut(s)	50, 71, 253, 500, 583, 641, 721
BtrI	CACGTC	1 cut(s)	29
BtsCI	GGATG	4 cut(s)	54, 533, 558, 604
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	3 cut(s)	291, 722, 813
Cac8I	GCNNGC	5 cut(s)	192, 546, 672, 790, 840
CaiI	CAGNNNCTG	1 cut(s)	782
CfoI	GCGC	2 cut(s)	135, 570
Cfr13I	GGNCC	1 cut(s)	79
CsiI	ACCWGGT	1 cut(s)	805
Csp6I	GTAC	3 cut(s)	330, 682, 850
CviAII	CATG	3 cut(s)	174, 472, 604
CviQI	GTAC	3 cut(s)	330, 682, 850
DdeI	CTNAG	2 cut(s)	285, 633
DpnI	GATC	2 cut(s)	402, 714
DpnII	GATC	2 cut(s)	400, 712
EaeI	YGGCCR	2 cut(s)	69, 498
EciI	GGCGGA	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	170, 332
Eco81I	CCTNAGG	1 cut(s)	633
EcoRII	CCWGG	3 cut(s)	248, 583, 805
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	875
FaeI	CATG	3 cut(s)	177, 475, 607
FaiI	YATR	8 cut(s)	153, 175, 258, 473, 480, 591, 605, 624
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	3 cut(s)	173, 471, 603
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 759, 786
FokI	GGATG	4 cut(s)	41, 540, 565, 611
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 759, 786
FspBI	CTAG	4 cut(s)	191, 198, 839, 880
GlaI	GCGC	2 cut(s)	134, 569
GluI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 759, 786
GsaI	CCCAGC	2 cut(s)	767, 776
GsuI	CTGGAG	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	7 cut(s)	50, 71, 253, 500, 583, 641, 721
HapII	CCGG	4 cut(s)	312, 327, 370, 497
HhaI	GCGC	2 cut(s)	135, 570
Hin1II	CATG	3 cut(s)	177, 475, 607
Hin6I	GCGC	2 cut(s)	133, 568
HinP1I	GCGC	2 cut(s)	133, 568
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	4 cut(s)	312, 327, 370, 497
HphI	GGTGA	4 cut(s)	214, 328, 395, 459
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	2 cut(s)	111, 351
Hpy188III	TCNNGA	3 cut(s)	58, 382, 677
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	37, 309, 367, 732
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	2 cut(s)	28, 123
HpyCH4V	TGCA	5 cut(s)	241, 562, 670, 758, 800
HpyF10VI	GCNNNNNNNGC	6 cut(s)	259, 671, 758, 764, 773, 782
HpyF3I	CTNAG	2 cut(s)	285, 633
HpySE526I	ACGT	2 cut(s)	28, 123
Hsp92II	CATG	3 cut(s)	177, 475, 607
HspAI	GCGC	2 cut(s)	133, 568
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	400, 712
LmnI	GCTCC	4 cut(s)	25, 115, 378, 679
Lsp1109I	GCAGC	4 cut(s)	181, 409, 770, 772
LweI	GCATC	2 cut(s)	727, 745
MabI	ACCWGGT	1 cut(s)	805
MaeI	CTAG	4 cut(s)	191, 198, 839, 880
MaeII	ACGT	2 cut(s)	28, 123
MaeIII	GTNAC	2 cut(s)	119, 875
MalI	GATC	2 cut(s)	402, 714
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	2 cut(s)	400, 712
MboII	GAAGA	3 cut(s)	118, 610, 671
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	2 cut(s)	411, 729
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	3 cut(s)	59, 236, 294
MspI	CCGG	4 cut(s)	312, 327, 370, 497
MspR9I	CCNGG	5 cut(s)	250, 327, 370, 585, 807
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	3 cut(s)	250, 585, 807
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	6 cut(s)	259, 671, 758, 764, 773, 782
NciI	CCSGG	2 cut(s)	327, 370
NdeII	GATC	2 cut(s)	400, 712
NheI	GCTAGC	2 cut(s)	190, 838
NlaIII	CATG	3 cut(s)	177, 475, 607
NlaIV	GGNNCC	3 cut(s)	91, 374, 574
NmeAIII	GCCGAG	2 cut(s)	66, 100
NmuCI	GTSAC	1 cut(s)	875
OliI	CACNNNNGTG	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	253
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	464
PkrI	GCNGC	7 cut(s)	19, 73, 137, 196, 424, 760, 787
Psp6I	CCWGG	3 cut(s)	248, 583, 805
PspFI	CCCAGC	2 cut(s)	763, 772
PspGI	CCWGG	3 cut(s)	248, 583, 805
PspN4I	GGNNCC	3 cut(s)	91, 374, 574
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	802
PstNI	CAGNNNCTG	1 cut(s)	782
RsaI	GTAC	3 cut(s)	331, 683, 851
RsaNI	GTAC	3 cut(s)	330, 682, 850
RseI	CAYNNNNRTG	3 cut(s)	59, 236, 294
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 759, 786
Sau3AI	GATC	2 cut(s)	400, 712
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	5 cut(s)	250, 327, 370, 585, 807
SduI	GDGCHC	1 cut(s)	369
SexAI	ACCWGGT	1 cut(s)	805
SfaNI	GCATC	2 cut(s)	727, 745
SfcI	CTRYAG	2 cut(s)	622, 798
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	3 cut(s)	59, 236, 294
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	411, 729
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	7 cut(s)	15, 18, 72, 136, 246, 570, 665
SspI	AATATT	1 cut(s)	692
SspMI	CTAG	4 cut(s)	191, 198, 839, 880
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	5 cut(s)	248, 325, 368, 583, 805
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	2 cut(s)	31, 126
TasI	AATT	2 cut(s)	411, 729
TatI	WGTACW	2 cut(s)	681, 849
TauI	GCSGC	3 cut(s)	20, 74, 138
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	3 cut(s)	298, 722, 820
TseFI	GTSAC	1 cut(s)	875
TseI	GCWGC	4 cut(s)	194, 422, 758, 785
Tsp45I	GTSAC	1 cut(s)	875
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	3 cut(s)	298, 722, 820
VpaK11BI	GGWCC	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	591
XspI	CTAG	4 cut(s)	191, 198, 839, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.