Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Reverse (-)

14971994 .. 14974381

Gene Structure 2388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1175600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTACCACCGCCGCAGCACCGCGTCAGCTCTCTCAGAAGGAGGCTGACATTCAGATGATGTTGGCCGCCGAAGTCCATCTGGGCACCAAAAACTGCGACTTTCAGATGGAAAGATACGTCTTCAAGAGACGCAACGATGGAATCTATATCATTAATCTTGGGAAAACATGGGACAAGCTGCAGCTGGCAGCCAGAGTGATTGTTGCAATTGAAAACCCAAAGGATATCATTGTGCAATCCGCAAGGCCATACGGTCAGAGGGCTGTACTGAAATTTGCTCAGCACACTGGTGCCAATGCAATTGCTGGCAGGCACACTCCTGGTACTTTTACCAATCAGCTCCAGACATCGTTCAATGAACCCCGTCTTCTCATTTTGACCGATCCACGAACTGACAGCCAGCCTATTAAAGAAGCTGCTCTCGGAAACATTCCCACCATTGCTTTTTGTGACACCGATTCTCCTATGCGTTATGTTGATATTGGCATCCCAGCCAATAACAAGGGCAAGCACAGCATAGGATGTCTTTTCTGGCTCCTAGCAAGGATGGTCTTGCAAATGCGTGGTTCACTCCTTCCTGGACACAAGTGGGATGTTATGGTTGATCTATTCTTCTATAGAGACCCTGAGGAGGCCAAGGAAAAGGAAGAAGAAACTGCAGCAATCGAGTATGGAAACGATTTCTCTGCACCTGTTGGTGGTGATTGGTCTGCCCAAATATCTGATGCTCAGTGGCCAACAGATGCATCTGCACCCATCCCTGCAGCTCCTGGCTGGACCGTAGAAGCAGTACCAATAGTAGCAGATGGATGGGATTCGGCTGTTCCACCACCACAGGCTCTGGCTACTGCCCCCATTGTTGAAGGTGGAGTTCCCGCTCCTACCGGCTGGGGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

301

Amino Acids

32.76

Weight (kDa)

5.22

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	21 - 114	1.6e-12	Ribosomal protein S2
Ribosomal_S2	PF00318	120 - 185	3.8e-11	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	86, 293
AccBSI	CCGCTC	1 cut(s)	881
AccII	CGCG	1 cut(s)	25
AciI	CCGC	6 cut(s)	12, 15, 23, 69, 243, 879
AclWI	GGATC	1 cut(s)	380
AcoI	YGGCCR	2 cut(s)	66, 737
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	3 cut(s)	270, 328, 795
AfiI	CCNNNNNNNGG	3 cut(s)	634, 701, 894
AgsI	TTSAA	4 cut(s)	127, 215, 358, 866
AjnI	CCWGG	3 cut(s)	322, 580, 772
AleI	CACNNNNGTG	1 cut(s)	291
AluBI	AGCT	6 cut(s)	31, 181, 187, 343, 419, 770
AluI	AGCT	6 cut(s)	31, 181, 187, 343, 419, 770
Alw26I	GTCTC	2 cut(s)	124, 618
AlwI	GGATC	1 cut(s)	380
AlwNI	CAGNNNCTG	2 cut(s)	773, 844
AoxI	GGCC	4 cut(s)	66, 248, 636, 737
ApeKI	GCWGC	7 cut(s)	17, 181, 184, 191, 419, 662, 767
ApoI	RAATTY	1 cut(s)	275
AseI	ATTAAT	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	780
AsuHPI	GGTGA	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	780
AxyI	CCTNAGG	1 cut(s)	630
BaeGI	GKGCMC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	739
BanI	GGYRCC	2 cut(s)	86, 293
BbsI	GAAGAC	2 cut(s)	115, 362
BbvI	GCAGC	7 cut(s)	29, 168, 196, 203, 406, 674, 779
BccI	CCATC	7 cut(s)	87, 103, 134, 544, 767, 803, 807
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	3 cut(s)	324, 582, 774
BcoDI	GTCTC	2 cut(s)	124, 618
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	4 cut(s)	182, 619, 660, 765
BisI	GCNGC	9 cut(s)	15, 18, 69, 182, 185, 192, 420, 663, 768
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	9 cut(s)	16, 19, 70, 183, 186, 193, 421, 664, 769
Bme1390I	CCNGG	3 cut(s)	324, 582, 774
Bme18I	GGWCC	1 cut(s)	780
BmgT120I	GGNCC	1 cut(s)	780
BmiI	GGNNCC	3 cut(s)	88, 295, 539
BmrFI	CCNGG	3 cut(s)	324, 582, 774
BmsI	GCATC	4 cut(s)	498, 718, 736, 758
BpiI	GAAGAC	2 cut(s)	115, 362
BpmI	CTGGAG	1 cut(s)	329
Bpu1102I	GCTNAGC	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	618
BsaJI	CCNNGG	1 cut(s)	639
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	3 cut(s)	634, 701, 894
Bse118I	RCCGGY	1 cut(s)	887
Bse1I	ACTGG	1 cut(s)	295
Bse21I	CCTNAGG	1 cut(s)	630
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	3 cut(s)	324, 582, 774
BseDI	CCNNGG	1 cut(s)	639
BseGI	GGATG	6 cut(s)	489, 530, 555, 601, 759, 818
BseLI	CCNNNNNNNGG	3 cut(s)	634, 701, 894
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	4 cut(s)	50, 296, 621, 746
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	647
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	7 cut(s)	29, 168, 196, 203, 406, 674, 779
BseYI	CCCAGC	2 cut(s)	493, 891
BsgI	GTGCAG	2 cut(s)	675, 738
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	4 cut(s)	68, 250, 638, 739
BshNI	GGYRCC	2 cut(s)	86, 293
BsiSI	CCGG	1 cut(s)	888
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	3 cut(s)	634, 701, 894
BsmAI	GTCTC	2 cut(s)	124, 618
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	4 cut(s)	68, 250, 638, 739
Bso31I	GGTCTC	1 cut(s)	618
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	385, 607
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	6 cut(s)	12, 15, 23, 69, 243, 879
BspANI	GGCC	4 cut(s)	68, 250, 638, 739
BspCNI	CTCAG	4 cut(s)	49, 295, 622, 745
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	3 cut(s)	88, 295, 539
BspMAI	CTGCAG	3 cut(s)	186, 664, 769
BspPI	GGATC	1 cut(s)	380
BspT107I	GGYRCC	2 cut(s)	86, 293
BspTNI	GGTCTC	1 cut(s)	618
BsrBI	CCGCTC	1 cut(s)	881
BsrDI	GCAATG	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	887
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	887
BssECI	CCNNGG	1 cut(s)	639
BssMI	GATC	2 cut(s)	385, 607
BssT1I	CCWWGG	1 cut(s)	639
Bst2UI	CCWGG	3 cut(s)	324, 582, 774
Bst4CI	ACNGT	2 cut(s)	257, 784
BstC8I	GCNNGC	5 cut(s)	189, 310, 314, 404, 512
BstDEI	CTNAG	4 cut(s)	36, 282, 630, 732
BstF5I	GGATG	6 cut(s)	489, 530, 555, 601, 759, 818
BstFNI	CGCG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	388, 610
BstMAI	GTCTC	2 cut(s)	124, 618
BstMBI	GATC	2 cut(s)	385, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 516
BstNI	CCWGG	3 cut(s)	324, 582, 774
BstSCI	CCNGG	3 cut(s)	322, 580, 772
BstSFI	CTRYAG	4 cut(s)	182, 619, 660, 765
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	7 cut(s)	29, 168, 196, 203, 406, 674, 779
BstV2I	GAAGAC	2 cut(s)	115, 362
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	4 cut(s)	68, 250, 638, 739
BtsCI	GGATG	6 cut(s)	489, 530, 555, 601, 759, 818
BtsIMutI	CAGTG	2 cut(s)	288, 740
Cac8I	GCNNGC	5 cut(s)	189, 310, 314, 404, 512
CaiI	CAGNNNCTG	2 cut(s)	773, 844
Cfr10I	RCCGGY	1 cut(s)	887
Cfr13I	GGNCC	1 cut(s)	780
CseI	GACGC	2 cut(s)	14, 141
Csp6I	GTAC	3 cut(s)	269, 327, 794
CviAII	CATG	1 cut(s)	171
CviQI	GTAC	3 cut(s)	269, 327, 794
DdeI	CTNAG	4 cut(s)	36, 282, 630, 732
DpnI	GATC	2 cut(s)	387, 609
DpnII	GATC	2 cut(s)	385, 607
EaeI	YGGCCR	2 cut(s)	66, 737
Eco130I	CCWWGG	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	618
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	780
Eco81I	CCTNAGG	1 cut(s)	630
EcoRII	CCWGG	3 cut(s)	322, 580, 772
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	639
EcoT22I	ATGCAT	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	1 cut(s)	174
FaiI	YATR	9 cut(s)	150, 172, 253, 470, 477, 521, 602, 621, 675
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	1 cut(s)	170
FauI	CCCGC	1 cut(s)	886
Fnu4HI	GCNGC	9 cut(s)	15, 18, 69, 182, 185, 192, 420, 663, 768
FokI	GGATG	6 cut(s)	476, 537, 562, 608, 746, 825
Fsp4HI	GCNGC	9 cut(s)	15, 18, 69, 182, 185, 192, 420, 663, 768
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	9 cut(s)	15, 18, 69, 182, 185, 192, 420, 663, 768
GsaI	CCCAGC	2 cut(s)	497, 895
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	4 cut(s)	68, 250, 638, 739
HapII	CCGG	1 cut(s)	888
HgaI	GACGC	2 cut(s)	14, 141
Hin1II	CATG	1 cut(s)	174
HinfI	GANTC	3 cut(s)	144, 461, 818
HpaII	CCGG	1 cut(s)	888
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	1 cut(s)	572
Hpy188I	TCNGA	6 cut(s)	39, 57, 108, 261, 428, 727
Hpy188III	TCNNGA	2 cut(s)	127, 346
Hpy8I	GTNNAC	1 cut(s)	572
HpyAV	CCTTC	3 cut(s)	34, 587, 860
HpyCH4III	ACNGT	2 cut(s)	257, 784
HpyCH4IV	ACGT	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 516
HpyF3I	CTNAG	4 cut(s)	36, 282, 630, 732
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	385, 607
LmnI	GCTCC	4 cut(s)	348, 543, 775, 886
Lsp1109I	GCAGC	7 cut(s)	29, 168, 196, 203, 406, 674, 779
LweI	GCATC	4 cut(s)	498, 718, 736, 758
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	2 cut(s)	387, 609
MbiI	CCGCTC	1 cut(s)	881
MboI	GATC	2 cut(s)	385, 607
MboII	GAAGA	5 cut(s)	115, 362, 607, 662, 665
MfeI	CAATTG	2 cut(s)	210, 303
MhlI	GDGCHC	1 cut(s)	89
MlsI	TGGCCA	1 cut(s)	739
MluCI	AATT	3 cut(s)	210, 275, 303
MluNI	TGGCCA	1 cut(s)	739
MnlI	CCTC	4 cut(s)	37, 255, 625, 628
Mox20I	TGGCCA	1 cut(s)	739
Mph1103I	ATGCAT	1 cut(s)	751
MscI	TGGCCA	1 cut(s)	739
MseI	TTAA	2 cut(s)	156, 411
MslI	CAYNNNNRTG	2 cut(s)	56, 291
Msp20I	TGGCCA	1 cut(s)	739
MspA1I	CMGCKG	1 cut(s)	187
MspI	CCGG	1 cut(s)	888
MspR9I	CCNGG	3 cut(s)	324, 582, 774
MunI	CAATTG	2 cut(s)	210, 303
MvaI	CCWGG	3 cut(s)	324, 582, 774
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	11, 516
NdeII	GATC	2 cut(s)	385, 607
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	3 cut(s)	88, 295, 539
NmuCI	GTSAC	1 cut(s)	452
NsiI	ATGCAT	1 cut(s)	751
OliI	CACNNNNGTG	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	144, 461, 818
PfoI	TCCNGGA	1 cut(s)	580
PkrI	GCNGC	9 cut(s)	16, 19, 70, 183, 186, 193, 421, 664, 769
PshBI	ATTAAT	1 cut(s)	156
Psp6I	CCWGG	3 cut(s)	322, 580, 772
PspFI	CCCAGC	2 cut(s)	493, 891
PspGI	CCWGG	3 cut(s)	322, 580, 772
PspN4I	GGNNCC	3 cut(s)	88, 295, 539
PspPI	GGNCC	1 cut(s)	780
PstI	CTGCAG	3 cut(s)	186, 664, 769
PstNI	CAGNNNCTG	2 cut(s)	773, 844
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	3 cut(s)	270, 328, 795
RsaNI	GTAC	3 cut(s)	269, 327, 794
RseI	CAYNNNNRTG	2 cut(s)	56, 291
SaqAI	TTAA	2 cut(s)	156, 411
SatI	GCNGC	9 cut(s)	15, 18, 69, 182, 185, 192, 420, 663, 768
Sau3AI	GATC	2 cut(s)	385, 607
Sau96I	GGNCC	1 cut(s)	780
ScrFI	CCNGG	3 cut(s)	324, 582, 774
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	9 cut(s)	33, 123, 183, 189, 345, 421, 697, 772, 871
SfaNI	GCATC	4 cut(s)	498, 718, 736, 758
SfcI	CTRYAG	4 cut(s)	182, 619, 660, 765
SinI	GGWCC	1 cut(s)	780
SmiMI	CAYNNNNRTG	2 cut(s)	56, 291
Sse9I	AATT	3 cut(s)	210, 275, 303
SsiI	CCGC	6 cut(s)	12, 15, 23, 69, 243, 879
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	3 cut(s)	322, 580, 772
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	2 cut(s)	257, 784
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	669
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	3 cut(s)	210, 275, 303
TatI	WGTACW	1 cut(s)	268
TauI	GCSGC	2 cut(s)	17, 71
TfiI	GAWTC	3 cut(s)	144, 461, 818
Tru1I	TTAA	2 cut(s)	156, 411
Tru9I	TTAA	2 cut(s)	156, 411
TscAI	CASTG	2 cut(s)	295, 740
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	7 cut(s)	17, 181, 184, 191, 419, 662, 767
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	295, 740
VpaK11BI	GGWCC	1 cut(s)	780
VspI	ATTAAT	1 cut(s)	156
XapI	RAATTY	1 cut(s)	275
XspI	CTAG	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.