Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72370 AT1G72370 AT3G04770 |
| fragaria_vesca | FvH4_5g30400 FvH4_6g35470 |
| malus_domestica | MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1 |
| prunus_persica | Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1 |
| pyrus_communis | pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450 |
| rosa_chinensis | RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841 |
| rosa_laevigata | RLG00000001849 RLG00000020239 |
| rosa_multiflora | Rmu_sc0001880.1_g000034 |
| rosa_roxburghii | Rroxscaffold_3G00234340 |
| rosa_rugosa | Rorug02G0398000 Rorug07G0226500 |
| rosa_samantha | Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800 |
| rosa_wichuraiana | Rw2G037130 Rw2G037230 Rw7G031380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 825 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 906 |
| AccI | GTMKAC | 1 cut(s) | 752 |
| AccII | CGCG | 1 cut(s) | 570 |
| AciI | CCGC | 6 cut(s) | 72, 136, 246, 370, 570, 764 |
| AcoI | YGGCCR | 1 cut(s) | 69 |
| AcsI | RAATTY | 1 cut(s) | 278 |
| AcuI | CTGAAG | 1 cut(s) | 170 |
| AfaI | GTAC | 2 cut(s) | 331, 683 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 46, 393, 906 |
| AgeI | ACCGGT | 1 cut(s) | 856 |
| AgsI | TTSAA | 2 cut(s) | 130, 218 |
| AjiI | CACGTC | 1 cut(s) | 29 |
| AjnI | CCWGG | 3 cut(s) | 197, 325, 583 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 411, 443 |
| AleI | CACNNNNGTG | 1 cut(s) | 294 |
| AluBI | AGCT | 5 cut(s) | 34, 346, 422, 674, 773 |
| AluI | AGCT | 5 cut(s) | 34, 346, 422, 674, 773 |
| Alw21I | GWGCWC | 1 cut(s) | 889 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 791 |
| AoxI | GGCC | 6 cut(s) | 69, 251, 581, 639, 722, 765 |
| ApeKI | GCWGC | 5 cut(s) | 17, 194, 422, 794, 863 |
| ApoI | RAATTY | 1 cut(s) | 278 |
| AsiGI | ACCGGT | 1 cut(s) | 856 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 183 |
| AspLEI | GCGC | 3 cut(s) | 135, 570, 826 |
| AspS9I | GGNCC | 2 cut(s) | 79, 766 |
| AsuHPI | GGTGA | 2 cut(s) | 395, 725 |
| AsuNHI | GCTAGC | 1 cut(s) | 544 |
| AvaII | GGWCC | 1 cut(s) | 79 |
| AxyI | CCTNAGG | 2 cut(s) | 578, 633 |
| BanII | GRGCYC | 1 cut(s) | 369 |
| BbsI | GAAGAC | 3 cut(s) | 118, 176, 666 |
| Bbv12I | GWGCWC | 1 cut(s) | 889 |
| BbvCI | CCTCAGC | 1 cut(s) | 75 |
| BbvI | GCAGC | 5 cut(s) | 4, 181, 409, 781, 850 |
| BccI | CCATC | 7 cut(s) | 90, 106, 452, 547, 824, 828, 878 |
| BciT130I | CCWGG | 3 cut(s) | 199, 327, 585 |
| BclI | TGATCA | 2 cut(s) | 400, 715 |
| BfaI | CTAG | 1 cut(s) | 545 |
| BfmI | CTRYAG | 3 cut(s) | 622, 753, 891 |
| BfoI | RGCGCY | 1 cut(s) | 136 |
| BisI | GCNGC | 8 cut(s) | 18, 72, 136, 195, 423, 765, 795, 864 |
| BlpI | GCTNAGC | 1 cut(s) | 285 |
| BlsI | GCNGC | 8 cut(s) | 19, 73, 137, 196, 424, 766, 796, 865 |
| Bme1390I | CCNGG | 3 cut(s) | 199, 327, 585 |
| Bme18I | GGWCC | 1 cut(s) | 79 |
| BmgBI | CACGTC | 1 cut(s) | 29 |
| BmgT120I | GGNCC | 2 cut(s) | 79, 766 |
| BmiI | GGNNCC | 3 cut(s) | 91, 574, 768 |
| BmrFI | CCNGG | 3 cut(s) | 199, 327, 585 |
| BmsI | GCATC | 3 cut(s) | 518, 555, 730 |
| BmtI | GCTAGC | 1 cut(s) | 548 |
| BpiI | GAAGAC | 3 cut(s) | 118, 176, 666 |
| BpmI | CTGGAG | 4 cut(s) | 332, 660, 831, 831 |
| Bpu10I | CCTNAGC | 1 cut(s) | 75 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 285 |
| BpuEI | CTTGAG | 1 cut(s) | 896 |
| BsaJI | CCNNGG | 4 cut(s) | 163, 198, 225, 392 |
| BsaWI | WCCGGW | 1 cut(s) | 856 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 34, 804, 834 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 46, 393, 906 |
| Bse118I | RCCGGY | 2 cut(s) | 800, 856 |
| Bse1I | ACTGG | 4 cut(s) | 298, 814, 818, 900 |
| Bse21I | CCTNAGG | 2 cut(s) | 578, 633 |
| Bse3DI | GCAATG | 2 cut(s) | 145, 684 |
| BseBI | CCWGG | 3 cut(s) | 199, 327, 585 |
| BseDI | CCNNGG | 4 cut(s) | 163, 198, 225, 392 |
| BseGI | GGATG | 6 cut(s) | 54, 533, 558, 604, 839, 870 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 46, 393, 906 |
| BseMI | GCAATG | 2 cut(s) | 145, 684 |
| BseMII | CTCAG | 3 cut(s) | 66, 299, 624 |
| BseNI | ACTGG | 4 cut(s) | 298, 814, 818, 900 |
| BseRI | GAGGAG | 3 cut(s) | 12, 650, 668 |
| BseXI | GCAGC | 5 cut(s) | 4, 181, 409, 781, 850 |
| BseYI | CCCAGC | 1 cut(s) | 769 |
| BsgI | GTGCAG | 2 cut(s) | 260, 849 |
| Bsh1236I | CGCG | 1 cut(s) | 570 |
| BshFI | GGCC | 6 cut(s) | 71, 253, 583, 641, 724, 767 |
| BshTI | ACCGGT | 1 cut(s) | 856 |
| BsiHKAI | GWGCWC | 1 cut(s) | 889 |
| BsiSI | CCGG | 2 cut(s) | 801, 857 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 46, 393, 906 |
| BsmI | GAATGC | 1 cut(s) | 492 |
| BsnI | GGCC | 6 cut(s) | 71, 253, 583, 641, 724, 767 |
| Bsp1286I | GDGCHC | 2 cut(s) | 369, 889 |
| Bsp143I | GATC | 2 cut(s) | 400, 715 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 285 |
| BspACI | CCGC | 6 cut(s) | 72, 136, 246, 370, 570, 764 |
| BspANI | GGCC | 6 cut(s) | 71, 253, 583, 641, 724, 767 |
| BspCNI | CTCAG | 3 cut(s) | 67, 298, 625 |
| BspFNI | CGCG | 1 cut(s) | 570 |
| BspLI | GGNNCC | 3 cut(s) | 91, 574, 768 |
| BspOI | GCTAGC | 1 cut(s) | 548 |
| BsrDI | GCAATG | 2 cut(s) | 145, 684 |
| BsrFI | RCCGGY | 2 cut(s) | 800, 856 |
| BsrI | ACTGG | 4 cut(s) | 298, 814, 818, 900 |
| BssAI | RCCGGY | 2 cut(s) | 800, 856 |
| BssECI | CCNNGG | 4 cut(s) | 163, 198, 225, 392 |
| BssMI | GATC | 2 cut(s) | 400, 715 |
| BssT1I | CCWWGG | 3 cut(s) | 163, 225, 392 |
| Bst2UI | CCWGG | 3 cut(s) | 199, 327, 585 |
| Bst4CI | ACNGT | 2 cut(s) | 146, 521 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 794 |
| BstC8I | GCNNGC | 2 cut(s) | 546, 726 |
| BstDEI | CTNAG | 4 cut(s) | 75, 285, 578, 633 |
| BstF5I | GGATG | 6 cut(s) | 54, 533, 558, 604, 839, 870 |
| BstFNI | CGCG | 1 cut(s) | 570 |
| BstH2I | RGCGCY | 1 cut(s) | 136 |
| BstHHI | GCGC | 3 cut(s) | 135, 570, 826 |
| BstKTI | GATC | 2 cut(s) | 403, 718 |
| BstMBI | GATC | 2 cut(s) | 400, 715 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 734, 770, 785, 794 |
| BstNI | CCWGG | 3 cut(s) | 199, 327, 585 |
| BstSCI | CCNGG | 3 cut(s) | 197, 325, 583 |
| BstSFI | CTRYAG | 3 cut(s) | 622, 753, 891 |
| BstUI | CGCG | 1 cut(s) | 570 |
| BstV1I | GCAGC | 5 cut(s) | 4, 181, 409, 781, 850 |
| BstV2I | GAAGAC | 3 cut(s) | 118, 176, 666 |
| Bsu36I | CCTNAGG | 2 cut(s) | 578, 633 |
| BsuRI | GGCC | 6 cut(s) | 71, 253, 583, 641, 724, 767 |
| BtgZI | GCGATG | 1 cut(s) | 430 |
| BtrI | CACGTC | 1 cut(s) | 29 |
| BtsCI | GGATG | 6 cut(s) | 54, 533, 558, 604, 839, 870 |
| BtsI | GCAGTG | 1 cut(s) | 12 |
| BtsIMutI | CAGTG | 4 cut(s) | 12, 291, 367, 907 |
| Cac8I | GCNNGC | 2 cut(s) | 546, 726 |
| CaiI | CAGNNNCTG | 1 cut(s) | 791 |
| CfoI | GCGC | 3 cut(s) | 135, 570, 826 |
| Cfr10I | RCCGGY | 2 cut(s) | 800, 856 |
| Cfr13I | GGNCC | 2 cut(s) | 79, 766 |
| Csp6I | GTAC | 2 cut(s) | 330, 682 |
| CspAI | ACCGGT | 1 cut(s) | 856 |
| CviAII | CATG | 3 cut(s) | 174, 472, 604 |
| CviQI | GTAC | 2 cut(s) | 330, 682 |
| DdeI | CTNAG | 4 cut(s) | 75, 285, 578, 633 |
| DpnI | GATC | 2 cut(s) | 402, 717 |
| DpnII | GATC | 2 cut(s) | 400, 715 |
| EaeI | YGGCCR | 1 cut(s) | 69 |
| Eco130I | CCWWGG | 3 cut(s) | 163, 225, 392 |
| Eco147I | AGGCCT | 1 cut(s) | 253 |
| Eco24I | GRGCYC | 1 cut(s) | 369 |
| Eco47I | GGWCC | 1 cut(s) | 79 |
| Eco57I | CTGAAG | 1 cut(s) | 170 |
| Eco81I | CCTNAGG | 2 cut(s) | 578, 633 |
| EcoRII | CCWGG | 3 cut(s) | 197, 325, 583 |
| EcoT14I | CCWWGG | 3 cut(s) | 163, 225, 392 |
| EcoT38I | GRGCYC | 1 cut(s) | 369 |
| ErhI | CCWWGG | 3 cut(s) | 163, 225, 392 |
| FaeI | CATG | 3 cut(s) | 177, 475, 607 |
| FaiI | YATR | 6 cut(s) | 175, 473, 480, 591, 605, 624 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 411, 443 |
| FatI | CATG | 3 cut(s) | 173, 471, 603 |
| FauI | CCCGC | 1 cut(s) | 377 |
| FbaI | TGATCA | 2 cut(s) | 400, 715 |
| FblI | GTMKAC | 1 cut(s) | 752 |
| Fnu4HI | GCNGC | 8 cut(s) | 18, 72, 136, 195, 423, 765, 795, 864 |
| FokI | GGATG | 6 cut(s) | 41, 540, 565, 611, 846, 857 |
| FriOI | GRGCYC | 1 cut(s) | 369 |
| Fsp4HI | GCNGC | 8 cut(s) | 18, 72, 136, 195, 423, 765, 795, 864 |
| FspBI | CTAG | 1 cut(s) | 545 |
| FspI | TGCGCA | 1 cut(s) | 825 |
| GlaI | GCGC | 3 cut(s) | 134, 569, 825 |
| GluI | GCNGC | 8 cut(s) | 18, 72, 136, 195, 423, 765, 795, 864 |
| GsaI | CCCAGC | 1 cut(s) | 773 |
| GsuI | CTGGAG | 4 cut(s) | 332, 660, 831, 831 |
| HaeII | RGCGCY | 1 cut(s) | 136 |
| HaeIII | GGCC | 6 cut(s) | 71, 253, 583, 641, 724, 767 |
| HapII | CCGG | 2 cut(s) | 801, 857 |
| HhaI | GCGC | 3 cut(s) | 135, 570, 826 |
| Hin1II | CATG | 3 cut(s) | 177, 475, 607 |
| Hin6I | GCGC | 3 cut(s) | 133, 568, 824 |
| HinP1I | GCGC | 3 cut(s) | 133, 568, 824 |
| HincII | GTYRAC | 1 cut(s) | 484 |
| HindII | GTYRAC | 1 cut(s) | 484 |
| HinfI | GANTC | 2 cut(s) | 464, 839 |
| HpaII | CCGG | 2 cut(s) | 801, 857 |
| HphI | GGTGA | 2 cut(s) | 395, 725 |
| Hpy166II | GTNNAC | 2 cut(s) | 484, 753 |
| Hpy188I | TCNGA | 1 cut(s) | 89 |
| Hpy188III | TCNNGA | 5 cut(s) | 58, 109, 274, 349, 677 |
| Hpy8I | GTNNAC | 2 cut(s) | 484, 753 |
| Hpy99I | CGWCG | 1 cut(s) | 10 |
| HpyAV | CCTTC | 3 cut(s) | 37, 309, 383 |
| HpyCH4III | ACNGT | 2 cut(s) | 146, 521 |
| HpyCH4IV | ACGT | 2 cut(s) | 28, 123 |
| HpyCH4V | TGCA | 5 cut(s) | 241, 305, 562, 689, 866 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 734, 770, 785, 794 |
| HpyF3I | CTNAG | 4 cut(s) | 75, 285, 578, 633 |
| HpySE526I | ACGT | 2 cut(s) | 28, 123 |
| Hsp92II | CATG | 3 cut(s) | 177, 475, 607 |
| HspAI | GCGC | 3 cut(s) | 133, 568, 824 |
| Ksp22I | TGATCA | 2 cut(s) | 400, 715 |
| Kzo9I | GATC | 2 cut(s) | 400, 715 |
| LmnI | GCTCC | 5 cut(s) | 25, 351, 679, 850, 892 |
| Lsp1109I | GCAGC | 5 cut(s) | 4, 181, 409, 781, 850 |
| LweI | GCATC | 3 cut(s) | 518, 555, 730 |
| MaeI | CTAG | 1 cut(s) | 545 |
| MaeII | ACGT | 2 cut(s) | 28, 123 |
| MalI | GATC | 2 cut(s) | 402, 717 |
| MboI | GATC | 2 cut(s) | 400, 715 |
| MboII | GAAGA | 4 cut(s) | 118, 181, 610, 671 |
| MfeI | CAATTG | 1 cut(s) | 306 |
| MhlI | GDGCHC | 2 cut(s) | 369, 889 |
| MluCI | AATT | 4 cut(s) | 278, 306, 411, 732 |
| MmeI | TCCRAC | 1 cut(s) | 464 |
| MnlI | CCTC | 9 cut(s) | 33, 40, 70, 258, 628, 631, 646, 649, 871 |
| MroXI | GAANNNNTTC | 1 cut(s) | 183 |
| MseI | TTAA | 2 cut(s) | 414, 913 |
| MslI | CAYNNNNRTG | 3 cut(s) | 59, 236, 294 |
| MspA1I | CMGCKG | 2 cut(s) | 74, 773 |
| MspI | CCGG | 2 cut(s) | 801, 857 |
| MspR9I | CCNGG | 3 cut(s) | 199, 327, 585 |
| MunI | CAATTG | 1 cut(s) | 306 |
| Mva1269I | GAATGC | 1 cut(s) | 492 |
| MvaI | CCWGG | 3 cut(s) | 199, 327, 585 |
| MvnI | CGCG | 1 cut(s) | 570 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 734, 770, 785, 794 |
| NdeII | GATC | 2 cut(s) | 400, 715 |
| NheI | GCTAGC | 1 cut(s) | 544 |
| NlaIII | CATG | 3 cut(s) | 177, 475, 607 |
| NlaIV | GGNNCC | 3 cut(s) | 91, 574, 768 |
| NsbI | TGCGCA | 1 cut(s) | 825 |
| OliI | CACNNNNGTG | 1 cut(s) | 294 |
| PceI | AGGCCT | 1 cut(s) | 253 |
| PctI | GAATGC | 1 cut(s) | 492 |
| PdmI | GAANNNNTTC | 1 cut(s) | 183 |
| PfeI | GAWTC | 2 cut(s) | 464, 839 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 906 |
| PinAI | ACCGGT | 1 cut(s) | 856 |
| PkrI | GCNGC | 8 cut(s) | 19, 73, 137, 196, 424, 766, 796, 865 |
| Psp6I | CCWGG | 3 cut(s) | 197, 325, 583 |
| PspFI | CCCAGC | 1 cut(s) | 769 |
| PspGI | CCWGG | 3 cut(s) | 197, 325, 583 |
| PspN4I | GGNNCC | 3 cut(s) | 91, 574, 768 |
| PspPI | GGNCC | 2 cut(s) | 79, 766 |
| PstNI | CAGNNNCTG | 1 cut(s) | 791 |
| PvuII | CAGCTG | 1 cut(s) | 773 |
| RsaI | GTAC | 2 cut(s) | 331, 683 |
| RsaNI | GTAC | 2 cut(s) | 330, 682 |
| RseI | CAYNNNNRTG | 3 cut(s) | 59, 236, 294 |
| SaqAI | TTAA | 2 cut(s) | 414, 913 |
| SatI | GCNGC | 8 cut(s) | 18, 72, 136, 195, 423, 765, 795, 864 |
| Sau3AI | GATC | 2 cut(s) | 400, 715 |
| Sau96I | GGNCC | 2 cut(s) | 79, 766 |
| ScrFI | CCNGG | 3 cut(s) | 199, 327, 585 |
| SduI | GDGCHC | 2 cut(s) | 369, 889 |
| SetI | ASST | 9 cut(s) | 31, 36, 81, 126, 165, 348, 424, 676, 775 |
| SfaNI | GCATC | 3 cut(s) | 518, 555, 730 |
| SfcI | CTRYAG | 3 cut(s) | 622, 753, 891 |
| SinI | GGWCC | 1 cut(s) | 79 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 59, 236, 294 |
| SmlI | CTYRAG | 1 cut(s) | 875 |
| SmoI | CTYRAG | 1 cut(s) | 875 |
| Sse9I | AATT | 4 cut(s) | 278, 306, 411, 732 |
| SseBI | AGGCCT | 1 cut(s) | 253 |
| SsiI | CCGC | 6 cut(s) | 72, 136, 246, 370, 570, 764 |
| SspMI | CTAG | 1 cut(s) | 545 |
| StuI | AGGCCT | 1 cut(s) | 253 |
| StyD4I | CCNGG | 3 cut(s) | 197, 325, 583 |
| StyI | CCWWGG | 3 cut(s) | 163, 225, 392 |
| TaaI | ACNGT | 2 cut(s) | 146, 521 |
| TaiI | ACGT | 2 cut(s) | 31, 126 |
| TaqII | GACCGA | 1 cut(s) | 401 |
| TasI | AATT | 4 cut(s) | 278, 306, 411, 732 |
| TatI | WGTACW | 1 cut(s) | 681 |
| TauI | GCSGC | 3 cut(s) | 74, 138, 767 |
| TfiI | GAWTC | 2 cut(s) | 464, 839 |
| Tru1I | TTAA | 2 cut(s) | 414, 913 |
| Tru9I | TTAA | 2 cut(s) | 414, 913 |
| TscAI | CASTG | 4 cut(s) | 19, 298, 367, 907 |
| TseI | GCWGC | 5 cut(s) | 17, 194, 422, 794, 863 |
| TspDTI | ATGAA | 1 cut(s) | 345 |
| TspGWI | ACGGA | 1 cut(s) | 273 |
| TspRI | CASTG | 4 cut(s) | 19, 298, 367, 907 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 906 |
| VpaK11BI | GGWCC | 1 cut(s) | 79 |
| XapI | RAATTY | 1 cut(s) | 278 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 591 |
| XmiI | GTMKAC | 1 cut(s) | 752 |
| XmnI | GAANNNNTTC | 1 cut(s) | 183 |
| XspI | CTAG | 1 cut(s) | 545 |