Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Forward (+)

66028384 .. 66031268

Gene Structure 2885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG467500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGACGACAACCGCTGCTCCTCCACGTCAGCTCTCGCAGAAGGAGGCCGACATCCAGATGATGTTGGCCGCCGAGGTCCATCTCGGCACCAAAAACTGCGACTTTCAGATGGAGCGTTACGTCTTCAAGCGCCGCAACGATGGGATTTATATCATCAATCTTGGGAAGACATGGGAGAAACTTCAGCTAGCTGCTAGGGTGATTGTTGCTATTGAAAACCCCAAGGACATCATTGTGCAGTCCGCCAGGCCTTATGGGCAGAGGGCTGTCCTCAAGTTTGCTCAGCACACTGGTGCTAATGCCATTGCTGGAAGGCACACTCCCGGTACTTTCACCAACCAGCTTCAGACTTCCTTCAACGAGCCCCGGCTCCTCATTTTGACCGACCCAAGAACTGATCACCAGCCAATTAAGGAGGCTGCACTTGGGAACATTCCCACCATCGCTTTCTGCGATACTGATTCACCCATGCGTTATGTTGACATTGGCATCCCGGCCAATAATAAGGGGAAGCACAGTATTGGATGTCTTTTCTGGTTGCTGGCAAGGATGGTTTTGCAAATGCGCGGTTCCGTTAGGCCAGGACATAAGTGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAGCCTGAGGAGGCCAAGCAACAAGAGGAGGAAGAAGCGGTGCAAGCTCCAGAGTACATTGAATATTCTGGTGGTCTTGGTGGCGATCAGTGGCCTACCCAAATTGCTGATGCTTCTTGGTCTGCTGATGCAGCCCCAGCTATCCCAGCAGTTCCTGCTGCCGGCTGGACTGCAGAACCAGGTTTCACTGCTACCCTTTTCTTTGTTGTGCTAGCACCATTGTACTTGTCTGTATTTTATCGTCTCTGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

293

Amino Acids

32.64

Weight (kDa)

6.18

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	22 - 115	1.1e-12	Ribosomal protein S2
Ribosomal_S2	PF00318	121 - 186	1.6e-11	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	1 cut(s)	570
AciI	CCGC	6 cut(s)	15, 72, 136, 246, 570, 665
AcoI	YGGCCR	2 cut(s)	69, 498
AcuI	CTGAAG	2 cut(s)	170, 332
AfaI	GTAC	3 cut(s)	331, 683, 851
AfiI	CCNNNNNNNGG	1 cut(s)	788
AgsI	TTSAA	4 cut(s)	130, 218, 361, 689
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	3 cut(s)	248, 583, 805
AleI	CACNNNNGTG	1 cut(s)	294
AluBI	AGCT	6 cut(s)	34, 190, 194, 346, 674, 767
AluI	AGCT	6 cut(s)	34, 190, 194, 346, 674, 767
Alw26I	GTCTC	1 cut(s)	875
AlwNI	CAGNNNCTG	1 cut(s)	782
AoxI	GGCC	7 cut(s)	48, 69, 251, 498, 581, 639, 719
ApeKI	GCWGC	5 cut(s)	17, 194, 422, 758, 785
AspLEI	GCGC	2 cut(s)	135, 570
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	3 cut(s)	327, 370, 497
AsuHPI	GGTGA	4 cut(s)	214, 328, 395, 459
AsuNHI	GCTAGC	2 cut(s)	190, 838
AvaII	GGWCC	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	118, 176
BbvI	GCAGC	5 cut(s)	4, 181, 409, 770, 772
BccI	CCATC	5 cut(s)	90, 106, 137, 452, 547
BciT130I	CCWGG	3 cut(s)	250, 585, 807
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	3 cut(s)	327, 370, 497
BcoDI	GTCTC	1 cut(s)	875
BfaI	CTAG	4 cut(s)	191, 198, 839, 880
BfmI	CTRYAG	2 cut(s)	622, 798
BfoI	RGCGCY	1 cut(s)	136
BglI	GCCNNNNNGGC	1 cut(s)	259
BisI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 759, 786
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	7 cut(s)	19, 73, 137, 196, 424, 760, 787
Bme1390I	CCNGG	6 cut(s)	250, 327, 370, 497, 585, 807
Bme18I	GGWCC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	3 cut(s)	91, 374, 574
BmrFI	CCNGG	6 cut(s)	250, 327, 370, 497, 585, 807
BmsI	GCATC	3 cut(s)	501, 727, 745
BmtI	GCTAGC	2 cut(s)	194, 842
BpiI	GAAGAC	2 cut(s)	118, 176
BpmI	CTGGAG	1 cut(s)	660
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	3 cut(s)	327, 370, 497
BsaBI	GATNNNNATC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	75, 225, 368
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	788
Bse118I	RCCGGY	1 cut(s)	788
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	1 cut(s)	633
Bse3DI	GCAATG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	152
BseBI	CCWGG	3 cut(s)	250, 585, 807
BseDI	CCNNGG	3 cut(s)	75, 225, 368
BseGI	GGATG	5 cut(s)	54, 492, 533, 558, 604
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	788
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	299, 624
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	4 cut(s)	12, 365, 650, 668
BseXI	GCAGC	5 cut(s)	4, 181, 409, 770, 772
BseYI	CCCAGC	2 cut(s)	763, 772
BsgI	GTGCAG	2 cut(s)	260, 408
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	7 cut(s)	50, 71, 253, 500, 583, 641, 721
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	4 cut(s)	327, 370, 497, 789
BslI	CCNNNNNNNGG	1 cut(s)	788
BsmAI	GTCTC	1 cut(s)	875
BsmBI	CGTCTC	1 cut(s)	875
BsnI	GGCC	7 cut(s)	50, 71, 253, 500, 583, 641, 721
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	400, 712
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	6 cut(s)	15, 72, 136, 246, 570, 665
BspANI	GGCC	7 cut(s)	50, 71, 253, 500, 583, 641, 721
BspCNI	CTCAG	2 cut(s)	298, 625
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	3 cut(s)	91, 374, 574
BspMAI	CTGCAG	1 cut(s)	802
BspOI	GCTAGC	2 cut(s)	194, 842
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	788
BsrI	ACTGG	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	788
BssECI	CCNNGG	3 cut(s)	75, 225, 368
BssMI	GATC	2 cut(s)	400, 712
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	3 cut(s)	250, 585, 807
Bst4CI	ACNGT	1 cut(s)	521
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	5 cut(s)	192, 546, 672, 790, 840
BstDEI	CTNAG	2 cut(s)	285, 633
BstF5I	GGATG	5 cut(s)	54, 492, 533, 558, 604
BstFNI	CGCG	1 cut(s)	570
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	135, 570
BstKTI	GATC	2 cut(s)	403, 715
BstMAI	GTCTC	1 cut(s)	875
BstMBI	GATC	2 cut(s)	400, 712
BstMWI	GCNNNNNNNGC	6 cut(s)	259, 671, 758, 764, 773, 782
BstNI	CCWGG	3 cut(s)	250, 585, 807
BstSCI	CCNGG	6 cut(s)	248, 325, 368, 495, 583, 805
BstSFI	CTRYAG	2 cut(s)	622, 798
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	5 cut(s)	4, 181, 409, 770, 772
BstV2I	GAAGAC	2 cut(s)	118, 176
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	7 cut(s)	50, 71, 253, 500, 583, 641, 721
BtgZI	GCGATG	1 cut(s)	430
BtrI	CACGTC	1 cut(s)	29
BtsCI	GGATG	5 cut(s)	54, 492, 533, 558, 604
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	3 cut(s)	291, 722, 813
Cac8I	GCNNGC	5 cut(s)	192, 546, 672, 790, 840
CaiI	CAGNNNCTG	1 cut(s)	782
CfoI	GCGC	2 cut(s)	135, 570
Cfr10I	RCCGGY	1 cut(s)	788
Cfr13I	GGNCC	1 cut(s)	79
CsiI	ACCWGGT	1 cut(s)	805
Csp6I	GTAC	3 cut(s)	330, 682, 850
CviAII	CATG	3 cut(s)	174, 472, 604
CviQI	GTAC	3 cut(s)	330, 682, 850
DdeI	CTNAG	2 cut(s)	285, 633
DpnI	GATC	2 cut(s)	402, 714
DpnII	GATC	2 cut(s)	400, 712
EaeI	YGGCCR	2 cut(s)	69, 498
EciI	GGCGGA	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	170, 332
Eco81I	CCTNAGG	1 cut(s)	633
EcoRII	CCWGG	3 cut(s)	248, 583, 805
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	875
FaeI	CATG	3 cut(s)	177, 475, 607
FaiI	YATR	8 cut(s)	153, 175, 258, 473, 480, 591, 605, 624
FatI	CATG	3 cut(s)	173, 471, 603
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 759, 786
FokI	GGATG	5 cut(s)	41, 479, 540, 565, 611
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 759, 786
FspBI	CTAG	4 cut(s)	191, 198, 839, 880
GlaI	GCGC	2 cut(s)	134, 569
GluI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 759, 786
GsaI	CCCAGC	2 cut(s)	767, 776
GsuI	CTGGAG	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	7 cut(s)	50, 71, 253, 500, 583, 641, 721
HapII	CCGG	4 cut(s)	327, 370, 497, 789
HhaI	GCGC	2 cut(s)	135, 570
Hin1II	CATG	3 cut(s)	177, 475, 607
Hin6I	GCGC	2 cut(s)	133, 568
HinP1I	GCGC	2 cut(s)	133, 568
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	4 cut(s)	327, 370, 497, 789
HphI	GGTGA	4 cut(s)	214, 328, 395, 459
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	2 cut(s)	111, 351
Hpy188III	TCNNGA	2 cut(s)	58, 677
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	37, 309, 367
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	2 cut(s)	28, 123
HpyCH4V	TGCA	6 cut(s)	241, 425, 562, 670, 758, 800
HpyF10VI	GCNNNNNNNGC	6 cut(s)	259, 671, 758, 764, 773, 782
HpyF3I	CTNAG	2 cut(s)	285, 633
HpySE526I	ACGT	2 cut(s)	28, 123
Hsp92II	CATG	3 cut(s)	177, 475, 607
HspAI	GCGC	2 cut(s)	133, 568
KroI	GCCGGC	1 cut(s)	788
KroNI	GCCGGC	1 cut(s)	790
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	400, 712
LmnI	GCTCC	4 cut(s)	25, 115, 378, 679
Lsp1109I	GCAGC	5 cut(s)	4, 181, 409, 770, 772
LweI	GCATC	3 cut(s)	501, 727, 745
MabI	ACCWGGT	1 cut(s)	805
MaeI	CTAG	4 cut(s)	191, 198, 839, 880
MaeII	ACGT	2 cut(s)	28, 123
MaeIII	GTNAC	2 cut(s)	119, 875
MalI	GATC	2 cut(s)	402, 714
MboI	GATC	2 cut(s)	400, 712
MboII	GAAGA	4 cut(s)	118, 181, 610, 671
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	2 cut(s)	411, 729
MroNI	GCCGGC	1 cut(s)	788
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	3 cut(s)	59, 236, 294
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	4 cut(s)	327, 370, 497, 789
MspR9I	CCNGG	6 cut(s)	250, 327, 370, 497, 585, 807
MvaI	CCWGG	3 cut(s)	250, 585, 807
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	6 cut(s)	259, 671, 758, 764, 773, 782
NaeI	GCCGGC	1 cut(s)	790
NciI	CCSGG	3 cut(s)	327, 370, 497
NdeII	GATC	2 cut(s)	400, 712
NgoMIV	GCCGGC	1 cut(s)	788
NheI	GCTAGC	2 cut(s)	190, 838
NlaIII	CATG	3 cut(s)	177, 475, 607
NlaIV	GGNNCC	3 cut(s)	91, 374, 574
NmeAIII	GCCGAG	2 cut(s)	66, 100
NmuCI	GTSAC	1 cut(s)	875
OliI	CACNNNNGTG	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	453
PdiI	GCCGGC	1 cut(s)	790
PfeI	GAWTC	1 cut(s)	464
PkrI	GCNGC	7 cut(s)	19, 73, 137, 196, 424, 760, 787
Psp6I	CCWGG	3 cut(s)	248, 583, 805
PspFI	CCCAGC	2 cut(s)	763, 772
PspGI	CCWGG	3 cut(s)	248, 583, 805
PspN4I	GGNNCC	3 cut(s)	91, 374, 574
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	802
PstNI	CAGNNNCTG	1 cut(s)	782
RsaI	GTAC	3 cut(s)	331, 683, 851
RsaNI	GTAC	3 cut(s)	330, 682, 850
RseI	CAYNNNNRTG	3 cut(s)	59, 236, 294
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	7 cut(s)	18, 72, 136, 195, 423, 759, 786
Sau3AI	GATC	2 cut(s)	400, 712
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	6 cut(s)	250, 327, 370, 497, 585, 807
SduI	GDGCHC	1 cut(s)	369
SexAI	ACCWGGT	1 cut(s)	805
SfaNI	GCATC	3 cut(s)	501, 727, 745
SfcI	CTRYAG	2 cut(s)	622, 798
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	3 cut(s)	59, 236, 294
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	411, 729
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	6 cut(s)	15, 72, 136, 246, 570, 665
SspI	AATATT	1 cut(s)	692
SspMI	CTAG	4 cut(s)	191, 198, 839, 880
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	6 cut(s)	248, 325, 368, 495, 583, 805
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	2 cut(s)	31, 126
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	2 cut(s)	411, 729
TatI	WGTACW	2 cut(s)	681, 849
TauI	GCSGC	2 cut(s)	74, 138
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	3 cut(s)	298, 722, 820
TseFI	GTSAC	1 cut(s)	875
TseI	GCWGC	5 cut(s)	17, 194, 422, 758, 785
Tsp45I	GTSAC	1 cut(s)	875
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	3 cut(s)	298, 722, 820
VpaK11BI	GGWCC	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	591
XspI	CTAG	4 cut(s)	191, 198, 839, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.