Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Forward (+)

21289497 .. 21291976

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGACGGCCGCTCCCACTCCTCCACGTCAGCTCTCCCAGAAGGAGGCTGACATCCAGATGATGTTGGCCGCCGAGGTCCATCTCGGCACCAAGAACTGCGATTTCCAGATGGAGAGATACGTCTTCAAGCGCCGCAACGACGGTATTTACATTATCAACCTTGGGAAGACATGGGAAAAACTCCAGCTGGCTGCCAGAGTTATTGTTGCTATTGAAAACCCCAAGGACATCATTGTGCAGTCTGCTAGGCCGTATGGACAAAGGGCTGTCTTGAAATTTGCTCAGCACACAGGTGCTAATGCCATTGCTGGTAGGCATACTCCTGGTACATTTACCAATCAGCTACAAACATCGTTCAATGAGCCCCGCCTTCTCATTTTGACCGACCCAAGGACTGATCACCAGCCAATCAAGGAAGCTGCTCTTGGGAACATCCCTACCATTGCCTTCTGTGATACTGATTCCCCCATGCGCTATGTTGACATTGGCATTCCAGCCAATAACAAGGGGAAGCACAGTATTGGATGCCTTTTCTGGTTGCTAGCAAGGATGGTTCTGCAAATGCGTGGTTCTCTTAGGCCAGGACATAAATGGGATGTCATGGTTGATTTGTTCTTCTACAGAGAACCTGAGGAGGCCAAGCCACAGGAGGAGGAAGATGCAGTCCAAGCTCCAGAGTACATTGCTGATTATACTGCTGGTCTTGGTGGCGAGCAATGGCCTGCCCACATTGCTGATGCTTCTTGGTCTACAGATGTTGCGGCCCCAGCTGGTGCTCTTCCAGCAGTAGCTGCTGCTGGCTGGACTGGAGAAACAGGTGCACAAGATGGTTGGGATACCGCAGTACCACCACCAGTTGCCGTTTCAACCCTTGAGGGTGGTGCTCCTGTAGTTGCCACTGGTTGGGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

306

Amino Acids

33.24

Weight (kDa)

5.4

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	22 - 115	1.1e-12	Ribosomal protein S2
Ribosomal_S2	PF00318	121 - 186	1.7e-11	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	906
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	752
AciI	CCGC	6 cut(s)	12, 72, 136, 370, 764, 843
AcoI	YGGCCR	2 cut(s)	9, 69
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	3 cut(s)	331, 683, 849
AfiI	CCNNNNNNNGG	3 cut(s)	46, 393, 906
AgsI	TTSAA	5 cut(s)	130, 218, 277, 361, 870
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	325, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AleI	CACNNNNGTG	1 cut(s)	294
AluBI	AGCT	7 cut(s)	34, 190, 346, 422, 674, 773, 794
AluI	AGCT	7 cut(s)	34, 190, 346, 422, 674, 773, 794
Alw21I	GWGCWC	3 cut(s)	781, 826, 889
Alw44I	GTGCAC	1 cut(s)	822
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	7 cut(s)	9, 69, 251, 581, 639, 722, 765
ApaLI	GTGCAC	1 cut(s)	822
ApeKI	GCWGC	4 cut(s)	194, 422, 794, 797
ApoI	RAATTY	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	135, 477
AspS9I	GGNCC	2 cut(s)	79, 766
AsuHPI	GGTGA	1 cut(s)	395
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	633
BaeGI	GKGCMC	1 cut(s)	826
BaeI	ACNNNNGTAYC	4 cut(s)	831, 831, 864, 864
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	118, 176
Bbv12I	GWGCWC	3 cut(s)	781, 826, 889
BbvI	GCAGC	4 cut(s)	181, 409, 781, 784
BccI	CCATC	4 cut(s)	90, 106, 547, 824
BceAI	ACGGC	3 cut(s)	24, 238, 848
BciT130I	CCWGG	2 cut(s)	327, 585
BciVI	GTATCC	1 cut(s)	832
BclI	TGATCA	1 cut(s)	400
BfaI	CTAG	2 cut(s)	249, 545
BfmI	CTRYAG	3 cut(s)	622, 753, 891
BfoI	RGCGCY	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	832
BisI	GCNGC	8 cut(s)	12, 72, 136, 195, 423, 765, 795, 798
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	8 cut(s)	13, 73, 137, 196, 424, 766, 796, 799
Bme1390I	CCNGG	2 cut(s)	327, 585
Bme18I	GGWCC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	79, 766
BmiI	GGNNCC	2 cut(s)	91, 768
BmrFI	CCNGG	2 cut(s)	327, 585
BmsI	GCATC	3 cut(s)	518, 652, 730
BmtI	GCTAGC	1 cut(s)	548
BpiI	GAAGAC	2 cut(s)	118, 176
BpmI	CTGGAG	3 cut(s)	170, 660, 831
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	896
BsaJI	CCNNGG	4 cut(s)	75, 163, 225, 392
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 393, 906
Bse1I	ACTGG	3 cut(s)	814, 857, 907
Bse21I	CCTNAGG	1 cut(s)	633
Bse3DI	GCAATG	5 cut(s)	306, 444, 684, 725, 732
BseBI	CCWGG	2 cut(s)	327, 585
BseDI	CCNNGG	4 cut(s)	75, 163, 225, 392
BseGI	GGATG	5 cut(s)	54, 435, 533, 558, 604
BseLI	CCNNNNNNNGG	3 cut(s)	46, 393, 906
BseMI	GCAATG	5 cut(s)	306, 444, 684, 725, 732
BseMII	CTCAG	2 cut(s)	299, 624
BseNI	ACTGG	3 cut(s)	814, 857, 907
BseRI	GAGGAG	3 cut(s)	12, 650, 668
BseSI	GKGCMC	1 cut(s)	826
BseX3I	CGGCCG	1 cut(s)	9
BseXI	GCAGC	4 cut(s)	181, 409, 781, 784
BseYI	CCCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	7 cut(s)	11, 71, 253, 583, 641, 724, 767
BshNI	GGYRCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	3 cut(s)	781, 826, 889
BslI	CCNNNNNNNGG	3 cut(s)	46, 393, 906
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	7 cut(s)	11, 71, 253, 583, 641, 724, 767
Bsp1286I	GDGCHC	4 cut(s)	369, 781, 826, 889
Bsp143I	GATC	1 cut(s)	400
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	6 cut(s)	12, 72, 136, 370, 764, 843
BspANI	GGCC	7 cut(s)	11, 71, 253, 583, 641, 724, 767
BspCNI	CTCAG	2 cut(s)	298, 625
BspLI	GGNNCC	2 cut(s)	91, 768
BspOI	GCTAGC	1 cut(s)	548
BspQI	GCTCTTC	1 cut(s)	786
BspT107I	GGYRCC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	14
BsrDI	GCAATG	5 cut(s)	306, 444, 684, 725, 732
BsrI	ACTGG	3 cut(s)	814, 857, 907
BssECI	CCNNGG	4 cut(s)	75, 163, 225, 392
BssMI	GATC	1 cut(s)	400
BssT1I	CCWWGG	3 cut(s)	163, 225, 392
Bst2UI	CCWGG	2 cut(s)	327, 585
Bst4CI	ACNGT	2 cut(s)	146, 521
Bst6I	CTCTTC	1 cut(s)	786
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	5 cut(s)	192, 546, 716, 726, 802
BstDEI	CTNAG	4 cut(s)	285, 578, 633, 915
BstF5I	GGATG	5 cut(s)	54, 435, 533, 558, 604
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	135, 477
BstKTI	GATC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	400
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 671, 734, 770, 785, 794
BstNI	CCWGG	2 cut(s)	327, 585
BstSCI	CCNGG	2 cut(s)	325, 583
BstSFI	CTRYAG	3 cut(s)	622, 753, 891
BstSLI	GKGCMC	1 cut(s)	826
BstV1I	GCAGC	4 cut(s)	181, 409, 781, 784
BstV2I	GAAGAC	2 cut(s)	118, 176
BstZI	CGGCCG	1 cut(s)	9
Bsu36I	CCTNAGG	1 cut(s)	633
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	7 cut(s)	11, 71, 253, 583, 641, 724, 767
BtrI	CACGTC	1 cut(s)	29
BtsCI	GGATG	5 cut(s)	54, 435, 533, 558, 604
BtsIMutI	CAGTG	1 cut(s)	900
Cac8I	GCNNGC	5 cut(s)	192, 546, 716, 726, 802
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	2 cut(s)	135, 477
Cfr13I	GGNCC	2 cut(s)	79, 766
Csp6I	GTAC	3 cut(s)	330, 682, 848
CviAII	CATG	3 cut(s)	174, 472, 604
CviQI	GTAC	3 cut(s)	330, 682, 848
DdeI	CTNAG	4 cut(s)	285, 578, 633, 915
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
EaeI	YGGCCR	2 cut(s)	9, 69
EagI	CGGCCG	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
EclXI	CGGCCG	1 cut(s)	9
Eco130I	CCWWGG	3 cut(s)	163, 225, 392
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	9
Eco81I	CCTNAGG	1 cut(s)	633
EcoRII	CCWGG	2 cut(s)	325, 583
EcoT14I	CCWWGG	3 cut(s)	163, 225, 392
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	3 cut(s)	163, 225, 392
FaeI	CATG	3 cut(s)	177, 475, 607
FaiI	YATR	8 cut(s)	175, 258, 321, 473, 480, 591, 605, 696
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	3 cut(s)	173, 471, 603
FauI	CCCGC	1 cut(s)	377
FbaI	TGATCA	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	752
Fnu4HI	GCNGC	8 cut(s)	12, 72, 136, 195, 423, 765, 795, 798
FokI	GGATG	5 cut(s)	41, 422, 540, 565, 611
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	8 cut(s)	12, 72, 136, 195, 423, 765, 795, 798
FspBI	CTAG	2 cut(s)	249, 545
GlaI	GCGC	2 cut(s)	134, 476
GluI	GCNGC	8 cut(s)	12, 72, 136, 195, 423, 765, 795, 798
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	3 cut(s)	170, 660, 831
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	7 cut(s)	11, 71, 253, 583, 641, 724, 767
HhaI	GCGC	2 cut(s)	135, 477
Hin1II	CATG	3 cut(s)	177, 475, 607
Hin6I	GCGC	2 cut(s)	133, 475
HinP1I	GCGC	2 cut(s)	133, 475
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	2 cut(s)	464, 911
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	3 cut(s)	484, 753, 824
Hpy188III	TCNNGA	4 cut(s)	58, 109, 274, 677
Hpy8I	GTNNAC	3 cut(s)	484, 753, 824
Hpy99I	CGWCG	2 cut(s)	10, 146
HpyAV	CCTTC	3 cut(s)	37, 383, 460
HpyCH4III	ACNGT	2 cut(s)	146, 521
HpyCH4IV	ACGT	2 cut(s)	28, 123
HpyCH4V	TGCA	4 cut(s)	241, 562, 665, 824
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 671, 734, 770, 785, 794
HpyF3I	CTNAG	4 cut(s)	285, 578, 633, 915
HpySE526I	ACGT	2 cut(s)	28, 123
Hsp92II	CATG	3 cut(s)	177, 475, 607
HspAI	GCGC	2 cut(s)	133, 475
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	400
LguI	GCTCTTC	1 cut(s)	786
LmnI	GCTCC	3 cut(s)	19, 679, 892
Lsp1109I	GCAGC	4 cut(s)	181, 409, 781, 784
LweI	GCATC	3 cut(s)	518, 652, 730
MaeI	CTAG	2 cut(s)	249, 545
MaeII	ACGT	2 cut(s)	28, 123
MalI	GATC	1 cut(s)	402
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	1 cut(s)	400
MboII	GAAGA	5 cut(s)	118, 181, 610, 671, 773
MhlI	GDGCHC	4 cut(s)	369, 781, 826, 889
MluCI	AATT	1 cut(s)	278
MnlI	CCTC	8 cut(s)	33, 40, 70, 628, 631, 646, 649, 871
MslI	CAYNNNNRTG	3 cut(s)	59, 236, 294
MspA1I	CMGCKG	2 cut(s)	190, 773
MspR9I	CCNGG	2 cut(s)	327, 585
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	327, 585
MwoI	GCNNNNNNNGC	6 cut(s)	11, 671, 734, 770, 785, 794
NdeII	GATC	1 cut(s)	400
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	3 cut(s)	177, 475, 607
NlaIV	GGNNCC	2 cut(s)	91, 768
NmeAIII	GCCGAG	2 cut(s)	66, 100
OliI	CACNNNNGTG	1 cut(s)	294
PciSI	GCTCTTC	1 cut(s)	786
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	464, 911
PflMI	CCANNNNNTGG	1 cut(s)	906
PkrI	GCNGC	8 cut(s)	13, 73, 137, 196, 424, 766, 796, 799
Psp6I	CCWGG	2 cut(s)	325, 583
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	2 cut(s)	325, 583
PspN4I	GGNNCC	2 cut(s)	91, 768
PspPI	GGNCC	2 cut(s)	79, 766
PstNI	CAGNNNCTG	1 cut(s)	794
PvuII	CAGCTG	2 cut(s)	190, 773
RsaI	GTAC	3 cut(s)	331, 683, 849
RsaNI	GTAC	3 cut(s)	330, 682, 848
RseI	CAYNNNNRTG	3 cut(s)	59, 236, 294
SapI	GCTCTTC	1 cut(s)	786
SatI	GCNGC	8 cut(s)	12, 72, 136, 195, 423, 765, 795, 798
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	2 cut(s)	79, 766
ScrFI	CCNGG	2 cut(s)	327, 585
SduI	GDGCHC	4 cut(s)	369, 781, 826, 889
SfaNI	GCATC	3 cut(s)	518, 652, 730
SfcI	CTRYAG	3 cut(s)	622, 753, 891
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	3 cut(s)	59, 236, 294
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	6 cut(s)	12, 72, 136, 370, 764, 843
SspMI	CTAG	2 cut(s)	249, 545
StyD4I	CCNGG	2 cut(s)	325, 583
StyI	CCWWGG	3 cut(s)	163, 225, 392
TaaI	ACNGT	2 cut(s)	146, 521
TaiI	ACGT	2 cut(s)	31, 126
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	1 cut(s)	278
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	4 cut(s)	14, 74, 138, 767
TfiI	GAWTC	2 cut(s)	464, 911
TscAI	CASTG	1 cut(s)	907
TseI	GCWGC	4 cut(s)	194, 422, 794, 797
TspRI	CASTG	1 cut(s)	907
Van91I	CCANNNNNTGG	1 cut(s)	906
VneI	GTGCAC	1 cut(s)	822
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	591
XmiI	GTMKAC	1 cut(s)	752
XspI	CTAG	2 cut(s)	249, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.