Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Forward (+)

13933687 .. 13936657

Gene Structure 2971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1151200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTACCACCGCCGCAGCACCGCGTCAGCTCTCTCAGAAGGAGGCTGACATTCAGATGATGTTGGCCGCCGAGGTCCATCTGGGCACCAAAAACTGCGACTTTCAGATGGAAAGATACGTTTTCAAGAGACGCAACGATGGAATCTATATCATAAATCTTGGGAAAACATGGGACAAGCTGCAGCTGGCAGCCAGAGTGATTGTTGCAATTGAAAACCCGAAGGATATCATCGTACAATCCGCAAGGCCATACGGTCAGAGGGCTGTGCTGAAATTTGCTCAGCACACTGGTGCGAATGCAATTGCTGGCAGGCACACTCCTGGTACTTTTACCAATCAGCTCCAGACATCATTCAATGAGCCCCGTCTTCTCATTCTGACTGACCCACGAACTGACAGCCAGCCTATTAAGGAAGCTGCTCTTGGAAACATACCCACCATTGCTTTCTGCGACACCGATTCTCCGATGCGTTATGTTGATATTGGCATCCCAGCCAATAACAAGGGCAAGCACAGCATTGGATGTCTTTTCTGGCTCCTAGCAAGGATGGTCTTGCAAATGCGTGGTTCGCTTCTACCAGGTCACAAGTGGGATGTTATGGTTGATCTGTTCTTCTATAGAGAGCCTGAGGAGGCCAAGGACAAGGAAGAAGAAGGTGCAGCAATTGAGTACGGAAACGATTTTTCTGCACCTGTTGGTGGTGATTGGTCTGCCCCAATATCTGATCCTCAGTGGGTAACGGATGCACCTGCACCACCCATTGCAGCAGCTCCTGGCTGGACTGCAGAAGCAGCACCAATAGCAGCAGATGGATGGGATGCGGTTGCTCCACCACCACAGGCTCTGGCTACTCCTCCCATTATTGAAGGTGGTGCTCCCGCCGCCACCTGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

300

Amino Acids

32.55

Weight (kDa)

5.2

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	21 - 114	1.6e-12	Ribosomal protein S2
Ribosomal_S2	PF00318	120 - 185	3.8e-11	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	760
Acc36I	ACCTGC	1 cut(s)	760
AccB1I	GGYRCC	1 cut(s)	86
AccII	CGCG	1 cut(s)	25
AciI	CCGC	8 cut(s)	12, 15, 23, 69, 243, 824, 882, 885
AclWI	GGATC	1 cut(s)	722
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	3 cut(s)	237, 328, 674
AfiI	CCNNNNNNNGG	2 cut(s)	701, 891
AgsI	TTSAA	4 cut(s)	127, 215, 358, 869
AjnI	CCWGG	4 cut(s)	322, 580, 775, 890
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AleI	CACNNNNGTG	1 cut(s)	291
AluBI	AGCT	6 cut(s)	31, 181, 187, 343, 419, 773
AluI	AGCT	6 cut(s)	31, 181, 187, 343, 419, 773
Alw21I	GWGCWC	1 cut(s)	880
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	722
AlwNI	CAGNNNCTG	2 cut(s)	776, 847
AoxI	GGCC	3 cut(s)	66, 248, 636
ApoI	RAATTY	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	76
AxyI	CCTNAGG	1 cut(s)	630
BaeGI	GKGCMC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	880
BccI	CCATC	6 cut(s)	87, 103, 134, 544, 806, 810
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	4 cut(s)	324, 582, 777, 892
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	3 cut(s)	182, 619, 786
BfuAI	ACCTGC	1 cut(s)	760
BlpI	GCTNAGC	1 cut(s)	282
Bme1390I	CCNGG	4 cut(s)	324, 582, 777, 892
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	88, 539
BmrFI	CCNGG	4 cut(s)	324, 582, 777, 892
BmsI	GCATC	4 cut(s)	459, 498, 736, 811
BpiI	GAAGAC	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	329
Bpu1102I	GCTNAGC	1 cut(s)	282
BsaJI	CCNNGG	3 cut(s)	72, 639, 891
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	701, 891
Bse1I	ACTGG	1 cut(s)	295
Bse21I	CCTNAGG	1 cut(s)	630
Bse3DI	GCAATG	2 cut(s)	441, 762
BseBI	CCWGG	4 cut(s)	324, 582, 777, 892
BseDI	CCNNGG	3 cut(s)	72, 639, 891
BseGI	GGATG	7 cut(s)	489, 530, 555, 601, 751, 821, 826
BseLI	CCNNNNNNNGG	2 cut(s)	701, 891
BseMI	GCAATG	2 cut(s)	441, 762
BseMII	CTCAG	4 cut(s)	50, 296, 621, 746
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	2 cut(s)	647, 846
BseSI	GKGCMC	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	493
BsgI	GTGCAG	3 cut(s)	675, 681, 738
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	68, 250, 638
BshNI	GGYRCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	880
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	701, 891
BsmAI	GTCTC	1 cut(s)	124
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	68, 250, 638
Bsp1286I	GDGCHC	3 cut(s)	89, 366, 880
Bsp143I	GATC	2 cut(s)	607, 727
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	8 cut(s)	12, 15, 23, 69, 243, 824, 882, 885
BspANI	GGCC	3 cut(s)	68, 250, 638
BspCNI	CTCAG	4 cut(s)	49, 295, 622, 745
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	88, 539
BspMAI	CTGCAG	2 cut(s)	186, 790
BspMI	ACCTGC	1 cut(s)	760
BspPI	GGATC	1 cut(s)	722
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	2 cut(s)	441, 762
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	72, 639, 891
BssMI	GATC	2 cut(s)	607, 727
BssT1I	CCWWGG	1 cut(s)	639
Bst2UI	CCWGG	4 cut(s)	324, 582, 777, 892
Bst4CI	ACNGT	1 cut(s)	257
BstC8I	GCNNGC	5 cut(s)	189, 310, 314, 404, 512
BstDEI	CTNAG	4 cut(s)	36, 282, 630, 732
BstF5I	GGATG	7 cut(s)	489, 530, 555, 601, 751, 821, 826
BstFNI	CGCG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	610, 730
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	607, 727
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 516, 571, 794, 803, 884
BstNI	CCWGG	4 cut(s)	324, 582, 777, 892
BstSCI	CCNGG	4 cut(s)	322, 580, 775, 890
BstSFI	CTRYAG	3 cut(s)	182, 619, 786
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	362
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	3 cut(s)	68, 250, 638
BtsCI	GGATG	7 cut(s)	489, 530, 555, 601, 751, 821, 826
BtsIMutI	CAGTG	2 cut(s)	288, 740
BveI	ACCTGC	1 cut(s)	760
Cac8I	GCNNGC	5 cut(s)	189, 310, 314, 404, 512
CaiI	CAGNNNCTG	2 cut(s)	776, 847
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	2 cut(s)	14, 141
CsiI	ACCWGGT	1 cut(s)	580
Csp6I	GTAC	3 cut(s)	236, 327, 673
CviAII	CATG	1 cut(s)	171
CviQI	GTAC	3 cut(s)	236, 327, 673
DdeI	CTNAG	4 cut(s)	36, 282, 630, 732
DpnI	GATC	2 cut(s)	609, 729
DpnII	GATC	2 cut(s)	607, 727
EaeI	YGGCCR	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	76
Eco81I	CCTNAGG	1 cut(s)	630
EcoRII	CCWGG	4 cut(s)	322, 580, 775, 890
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	639
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	1 cut(s)	174
FaiI	YATR	8 cut(s)	150, 155, 172, 253, 434, 477, 602, 621
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	1 cut(s)	170
FauI	CCCGC	1 cut(s)	889
FokI	GGATG	7 cut(s)	476, 537, 562, 608, 758, 828, 833
FriOI	GRGCYC	1 cut(s)	366
FspBI	CTAG	1 cut(s)	542
GsaI	CCCAGC	1 cut(s)	497
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	68, 250, 638
HgaI	GACGC	2 cut(s)	14, 141
Hin1II	CATG	1 cut(s)	174
HinfI	GANTC	2 cut(s)	144, 461
HphI	GGTGA	1 cut(s)	716
Hpy188I	TCNGA	7 cut(s)	39, 57, 108, 261, 381, 468, 727
Hpy188III	TCNNGA	2 cut(s)	127, 346
HpyAV	CCTTC	4 cut(s)	34, 217, 650, 863
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 516, 571, 794, 803, 884
HpyF3I	CTNAG	4 cut(s)	36, 282, 630, 732
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	607, 727
LmnI	GCTCC	5 cut(s)	348, 543, 778, 835, 883
LweI	GCATC	4 cut(s)	459, 498, 736, 811
MabI	ACCWGGT	1 cut(s)	580
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	584, 739
MalI	GATC	2 cut(s)	609, 729
MboI	GATC	2 cut(s)	607, 727
MboII	GAAGA	4 cut(s)	362, 607, 662, 665
MfeI	CAATTG	3 cut(s)	210, 303, 666
MhlI	GDGCHC	3 cut(s)	89, 366, 880
MluCI	AATT	4 cut(s)	210, 275, 303, 666
MnlI	CCTC	7 cut(s)	37, 67, 255, 625, 628, 741, 867
MseI	TTAA	2 cut(s)	411, 898
MslI	CAYNNNNRTG	2 cut(s)	56, 291
MspA1I	CMGCKG	1 cut(s)	187
MspR9I	CCNGG	4 cut(s)	324, 582, 777, 892
MunI	CAATTG	3 cut(s)	210, 303, 666
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	4 cut(s)	324, 582, 777, 892
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	6 cut(s)	11, 516, 571, 794, 803, 884
NdeII	GATC	2 cut(s)	607, 727
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	2 cut(s)	88, 539
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	584
OliI	CACNNNNGTG	1 cut(s)	291
PaqCI	CACCTGC	1 cut(s)	760
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	144, 461
Psp6I	CCWGG	4 cut(s)	322, 580, 775, 890
PspFI	CCCAGC	1 cut(s)	493
PspGI	CCWGG	4 cut(s)	322, 580, 775, 890
PspN4I	GGNNCC	2 cut(s)	88, 539
PspPI	GGNCC	1 cut(s)	76
PstI	CTGCAG	2 cut(s)	186, 790
PstNI	CAGNNNCTG	2 cut(s)	776, 847
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	3 cut(s)	237, 328, 674
RsaNI	GTAC	3 cut(s)	236, 327, 673
RseI	CAYNNNNRTG	2 cut(s)	56, 291
SaqAI	TTAA	2 cut(s)	411, 898
Sau3AI	GATC	2 cut(s)	607, 727
Sau96I	GGNCC	1 cut(s)	76
ScrFI	CCNGG	4 cut(s)	324, 582, 777, 892
SduI	GDGCHC	3 cut(s)	89, 366, 880
SexAI	ACCWGGT	1 cut(s)	580
SfaNI	GCATC	4 cut(s)	459, 498, 736, 811
SfcI	CTRYAG	3 cut(s)	182, 619, 786
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	2 cut(s)	56, 291
Sse9I	AATT	4 cut(s)	210, 275, 303, 666
SsiI	CCGC	8 cut(s)	12, 15, 23, 69, 243, 824, 882, 885
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	4 cut(s)	322, 580, 775, 890
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	1 cut(s)	123
TasI	AATT	4 cut(s)	210, 275, 303, 666
TauI	GCSGC	3 cut(s)	17, 71, 887
TfiI	GAWTC	2 cut(s)	144, 461
Tru1I	TTAA	2 cut(s)	411, 898
Tru9I	TTAA	2 cut(s)	411, 898
TscAI	CASTG	2 cut(s)	295, 740
TseFI	GTSAC	1 cut(s)	584
Tsp45I	GTSAC	1 cut(s)	584
TspGWI	ACGGA	2 cut(s)	690, 758
TspRI	CASTG	2 cut(s)	295, 740
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	588
XspI	CTAG	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.