Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004147

Physical Location & Seq

Genomic Coordinates Forward (+)

16794410 .. 16795907

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCGACCACCACCGCCGCGGCCCCGCGCCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTGGCCGCCGAAGTGCATCTGGGTACCAAAAACTGCGATTTCCAGATGGAAAGATACGTCTTCAAGCGCCGCAATGACGGGATTTACATTATCAATCTTGGGAAAACTTGGGACAAGCTTCAGATGGCTGCCAGGGTGATTGTTGCGATTGAGAATCCTAAGGATATCATTGTACAATCAGCAAGGCCCTATGGACAGAGGGCTGTCCTGAAATTTGCTCAGCACACTGGTGCTAATGCTATTGCTGGAAGGCACACGCCTGGTACTTTCACAAATCAGCTCCAGACGTCGTTCAATGAGCCCCGTCTCCTCATTCTGACTGACCCACGAACTGATGCTCAGCCAATTAAGGAGGCTGCTTTGGGAAACATACCCACCATTGCTTTCTGTGATACTGATTCCCCTATGCGTTATGTTGATATTGGCATCCCTGCAAATAACAAGGGGAAGCACAGCATCGGATGTCTTTTCTGGCTCCTAGCAAGGATGGTTTTGCAGATGCGTGGTTCCCTCCGTCCAGGGCTTAAGTGGGATGTCATGGTTGATCTTTTCTTCTATAGAGACCCTGAGGAGGCCAAGGAAAAGGAAGATGAAGATCTTCCTCAAATCCCAGATTATGGAACGGCAGATTATGCTGCACCTGTTATCGGCGGGGCTCGATCAATGGCCTACCCAAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006518 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0030684 GO:0030686 GO:0031123 GO:0031125 GO:0031503 GO:0032991 GO:0033036 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043628 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097064 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

40S_SA_C Ribosomal_S2

Protein Analysis

250

Amino Acids

27.82

Weight (kDa)

7.7

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	22 - 115	6.5e-13	Ribosomal protein S2
Ribosomal_S2	PF00318	121 - 186	3.3e-11	Ribosomal protein S2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72370 AT1G72370 AT3G04770
fragaria_vesca	FvH4_5g30400 FvH4_6g35470
malus_domestica	MD05G1165200.v1.1 MD09G1175600.v1.1 MD10G1154500.v1.1 MD17G1151200.v1.1
prunus_persica	Prupe.3G034600_v2.0.a1 Prupe.8G193400_v2.0.a1 Prupe.8G193400_v2.0.a1
pyrus_communis	pycom05g15380 pycom09g09330 pycom10g13360 pycom17g14450
rosa_chinensis	RchiOBHm_Chr2g0147021 RchiOBHm_Chr7g0224841
rosa_laevigata	RLG00000001849 RLG00000020239
rosa_multiflora	Rmu_sc0001880.1_g000034
rosa_roxburghii	Rroxscaffold_3G00234340
rosa_rugosa	Rorug02G0398000 Rorug07G0226500
rosa_samantha	Rh2BG467500 Rh2DG476600 Rh7AG377100 Rh7BG361900 Rh7CG395800 Rh7DG371800
rosa_wichuraiana	Rw2G037130 Rw2G037230 Rw7G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	356
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccII	CGCG	2 cut(s)	20, 28
AciI	CCGC	7 cut(s)	15, 18, 20, 26, 72, 136, 717
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	3 cut(s)	91, 240, 331
AfiI	CCNNNNNNNGG	3 cut(s)	637, 683, 713
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	2 cut(s)	130, 361
AjnI	CCWGG	3 cut(s)	197, 325, 583
AleI	CACNNNNGTG	1 cut(s)	294
AluBI	AGCT	3 cut(s)	34, 184, 346
AluI	AGCT	3 cut(s)	34, 184, 346
Alw26I	GTCTC	2 cut(s)	377, 621
AoxI	GGCC	5 cut(s)	21, 69, 251, 639, 732
ApeKI	GCWGC	3 cut(s)	194, 422, 701
ApoI	RAATTY	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	663
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	2 cut(s)	30, 135
AspS9I	GGNCC	2 cut(s)	22, 252
AsuHPI	GGTGA	1 cut(s)	214
AxyI	CCTNAGG	2 cut(s)	225, 633
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	369, 724
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	3 cut(s)	181, 409, 688
BccI	CCATC	3 cut(s)	106, 184, 547
BceAI	ACGGC	1 cut(s)	705
BciT130I	CCWGG	3 cut(s)	199, 327, 585
BcoDI	GTCTC	2 cut(s)	377, 621
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	622
BfoI	RGCGCY	1 cut(s)	136
BfrI	CTTAAG	1 cut(s)	590
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	7 cut(s)	18, 21, 72, 136, 195, 423, 702
BlpI	GCTNAGC	2 cut(s)	285, 405
BlsI	GCNGC	7 cut(s)	19, 22, 73, 137, 196, 424, 703
Bme1390I	CCNGG	3 cut(s)	199, 327, 585
BmgT120I	GGNCC	2 cut(s)	22, 252
BmiI	GGNNCC	4 cut(s)	24, 91, 542, 574
BmrFI	CCNGG	3 cut(s)	199, 327, 585
BmsI	GCATC	5 cut(s)	91, 391, 501, 531, 555
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	332
Bpu1102I	GCTNAGC	2 cut(s)	285, 405
BsaBI	GATNNNNATC	1 cut(s)	660
BsaHI	GRCGYC	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	621
BsaJI	CCNNGG	4 cut(s)	18, 198, 584, 642
Bsc4I	CCNNNNNNNGG	3 cut(s)	637, 683, 713
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	2 cut(s)	225, 633
Bse3DI	GCAATG	2 cut(s)	145, 444
Bse8I	GATNNNNATC	1 cut(s)	660
BseBI	CCWGG	3 cut(s)	199, 327, 585
BseDI	CCNNGG	4 cut(s)	18, 198, 584, 642
BseGI	GGATG	4 cut(s)	492, 533, 558, 604
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	3 cut(s)	637, 683, 713
BseMI	GCAATG	2 cut(s)	145, 444
BseMII	CTCAG	4 cut(s)	53, 299, 419, 624
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	365, 650
BseXI	GCAGC	3 cut(s)	181, 409, 688
BsgI	GTGCAG	1 cut(s)	687
Bsh1236I	CGCG	2 cut(s)	20, 28
BshFI	GGCC	5 cut(s)	23, 71, 253, 641, 734
BshNI	GGYRCC	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	3 cut(s)	637, 683, 713
BsmAI	GTCTC	2 cut(s)	377, 621
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	5 cut(s)	23, 71, 253, 641, 734
Bso31I	GGTCTC	1 cut(s)	621
Bsp1286I	GDGCHC	2 cut(s)	369, 724
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	610, 661, 725
Bsp1720I	GCTNAGC	2 cut(s)	285, 405
BspACI	CCGC	7 cut(s)	15, 18, 20, 26, 72, 136, 717
BspANI	GGCC	5 cut(s)	23, 71, 253, 641, 734
BspCNI	CTCAG	4 cut(s)	52, 298, 418, 625
BspFNI	CGCG	2 cut(s)	20, 28
BspLI	GGNNCC	4 cut(s)	24, 91, 542, 574
BspT107I	GGYRCC	1 cut(s)	89
BspTI	CTTAAG	1 cut(s)	590
BspTNI	GGTCTC	1 cut(s)	621
BsrDI	GCAATG	2 cut(s)	145, 444
BsrGI	TGTACA	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	4 cut(s)	18, 198, 584, 642
BssMI	GATC	3 cut(s)	610, 661, 725
BssNI	GRCGYC	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	642
Bst2UI	CCWGG	3 cut(s)	199, 327, 585
BstACI	GRCGYC	1 cut(s)	353
BstAFI	CTTAAG	1 cut(s)	590
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstAUI	TGTACA	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	5 cut(s)	39, 225, 285, 405, 633
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	4 cut(s)	492, 533, 558, 604
BstFNI	CGCG	2 cut(s)	20, 28
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	30, 135
BstKTI	GATC	3 cut(s)	613, 664, 728
BstMAI	GTCTC	2 cut(s)	377, 621
BstMBI	GATC	3 cut(s)	610, 661, 725
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNI	CCWGG	3 cut(s)	199, 327, 585
BstSCI	CCNGG	3 cut(s)	197, 325, 583
BstSFI	CTRYAG	1 cut(s)	622
BstUI	CGCG	2 cut(s)	20, 28
BstV1I	GCAGC	3 cut(s)	181, 409, 688
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
Bsu36I	CCTNAGG	2 cut(s)	225, 633
BsuRI	GGCC	5 cut(s)	23, 71, 253, 641, 734
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	4 cut(s)	492, 533, 558, 604
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	32
CfoI	GCGC	2 cut(s)	30, 135
Cfr13I	GGNCC	2 cut(s)	22, 252
Cfr42I	CCGCGG	1 cut(s)	21
Csp6I	GTAC	3 cut(s)	90, 239, 330
CviAII	CATG	1 cut(s)	604
CviQI	GTAC	3 cut(s)	90, 239, 330
DdeI	CTNAG	5 cut(s)	39, 225, 285, 405, 633
DpnI	GATC	3 cut(s)	612, 663, 727
DpnII	GATC	3 cut(s)	610, 661, 725
EaeI	YGGCCR	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	642
Eco24I	GRGCYC	2 cut(s)	369, 724
Eco31I	GGTCTC	1 cut(s)	621
Eco32I	GATATC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	170
Eco81I	CCTNAGG	2 cut(s)	225, 633
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	3 cut(s)	197, 325, 583
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	642
EcoT38I	GRGCYC	2 cut(s)	369, 724
ErhI	CCWWGG	1 cut(s)	642
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	1 cut(s)	607
FaiI	YATR	8 cut(s)	258, 437, 473, 480, 605, 624, 684, 699
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	603
FauI	CCCGC	2 cut(s)	33, 710
Fnu4HI	GCNGC	7 cut(s)	18, 21, 72, 136, 195, 423, 702
FokI	GGATG	4 cut(s)	479, 540, 565, 611
FriOI	GRGCYC	2 cut(s)	369, 724
Fsp4HI	GCNGC	7 cut(s)	18, 21, 72, 136, 195, 423, 702
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	2 cut(s)	29, 134
GluI	GCNGC	7 cut(s)	18, 21, 72, 136, 195, 423, 702
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	5 cut(s)	23, 71, 253, 641, 734
HhaI	GCGC	2 cut(s)	30, 135
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	607
Hin6I	GCGC	2 cut(s)	28, 133
HinP1I	GCGC	2 cut(s)	28, 133
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	2 cut(s)	220, 464
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	6 cut(s)	42, 60, 189, 384, 527, 749
Hpy188III	TCNNGA	3 cut(s)	109, 274, 349
Hpy99I	CGWCG	1 cut(s)	358
HpyAV	CCTTC	1 cut(s)	309
HpyCH4IV	ACGT	2 cut(s)	123, 353
HpyCH4V	TGCA	4 cut(s)	82, 500, 562, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	5 cut(s)	39, 225, 285, 405, 633
HpySE526I	ACGT	2 cut(s)	123, 353
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	607
HspAI	GCGC	2 cut(s)	28, 133
KpnI	GGTACC	1 cut(s)	93
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	610, 661, 725
LmnI	GCTCC	2 cut(s)	351, 546
Lsp1109I	GCAGC	3 cut(s)	181, 409, 688
LweI	GCATC	5 cut(s)	91, 391, 501, 531, 555
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	2 cut(s)	123, 353
MalI	GATC	3 cut(s)	612, 663, 727
MboI	GATC	3 cut(s)	610, 661, 725
MboII	GAAGA	5 cut(s)	118, 610, 656, 665, 671
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	2 cut(s)	369, 724
MluCI	AATT	2 cut(s)	278, 411
MnlI	CCTC	8 cut(s)	40, 258, 386, 412, 587, 628, 631, 678
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	2 cut(s)	414, 591
MslI	CAYNNNNRTG	2 cut(s)	59, 294
MspA1I	CMGCKG	1 cut(s)	20
MspCI	CTTAAG	1 cut(s)	590
MspR9I	CCNGG	3 cut(s)	199, 327, 585
MvaI	CCWGG	3 cut(s)	199, 327, 585
MvnI	CGCG	2 cut(s)	20, 28
MwoI	GCNNNNNNNGC	1 cut(s)	698
NdeII	GATC	3 cut(s)	610, 661, 725
NlaIII	CATG	1 cut(s)	607
NlaIV	GGNNCC	4 cut(s)	24, 91, 542, 574
OliI	CACNNNNGTG	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	220, 464
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	7 cut(s)	19, 22, 73, 137, 196, 424, 703
Psp6I	CCWGG	3 cut(s)	197, 325, 583
PspGI	CCWGG	3 cut(s)	197, 325, 583
PspN4I	GGNNCC	4 cut(s)	24, 91, 542, 574
PspPI	GGNCC	2 cut(s)	22, 252
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	3 cut(s)	91, 240, 331
RsaNI	GTAC	3 cut(s)	90, 239, 330
RseI	CAYNNNNRTG	2 cut(s)	59, 294
SacII	CCGCGG	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	414, 591
SatI	GCNGC	7 cut(s)	18, 21, 72, 136, 195, 423, 702
Sau3AI	GATC	3 cut(s)	610, 661, 725
Sau96I	GGNCC	2 cut(s)	22, 252
ScrFI	CCNGG	3 cut(s)	199, 327, 585
SduI	GDGCHC	2 cut(s)	369, 724
SetI	ASST	6 cut(s)	36, 126, 186, 348, 356, 709
SfaNI	GCATC	5 cut(s)	91, 391, 501, 531, 555
SfcI	CTRYAG	1 cut(s)	622
Sfr303I	CCGCGG	1 cut(s)	21
SgrBI	CCGCGG	1 cut(s)	21
SmiMI	CAYNNNNRTG	2 cut(s)	59, 294
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	2 cut(s)	278, 411
SsiI	CCGC	7 cut(s)	15, 18, 20, 26, 72, 136, 717
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	3 cut(s)	197, 325, 583
StyI	CCWWGG	1 cut(s)	642
TaiI	ACGT	2 cut(s)	126, 356
TaqI	TCGA	1 cut(s)	724
TasI	AATT	2 cut(s)	278, 411
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	4 cut(s)	20, 23, 74, 138
TfiI	GAWTC	2 cut(s)	220, 464
Tru1I	TTAA	2 cut(s)	414, 591
Tru9I	TTAA	2 cut(s)	414, 591
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	3 cut(s)	194, 422, 701
TspDTI	ATGAA	1 cut(s)	672
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	683
Vha464I	CTTAAG	1 cut(s)	590
XapI	RAATTY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	591
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	1 cut(s)	545
ZraI	GACGTC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.