CCAAT enhancer-binding protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72440 |
| fragaria_vesca | FvH4_6g35460 FvH4_6g35460 |
| malus_domestica | MD09G1175700.v1.1 MD17G1151100.v1.1 |
| prunus_persica | Prupe.3G034700_v2.0.a1 Prupe.3G034700_v2.0.a1 Prupe.3G034700_v2.0.a1 |
| pyrus_communis | pycom09g09340 pycom09g09350 pycom17g14440 |
| rosa_chinensis | RchiOBHm_Chr2g0147011 |
| rosa_laevigata | RLG00000020238 |
| rosa_multiflora | Rmu_co8429717.1_g000001 Rmu_sc0001880.1_g000035 |
| rosa_roxburghii | Rroxscaffold_2G00099760 |
| rosa_rugosa | Rorug02G0398000 |
| rosa_samantha | Rh2AG455000 Rh2BG467300 Rh2CG442400 Rh2DG476500 Rh7BG367700 |
| rosa_wichuraiana | Rw2G037120 Rw2G037220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 1702, 2371, 2531 |
| AccI | GTMKAC | 1 cut(s) | 2256 |
| AciI | CCGC | 9 cut(s) | 5, 27, 440, 509, 775, 1977, 2346, 2568, 2768 |
| AclWI | GGATC | 3 cut(s) | 1004, 2042, 2117 |
| AcoI | YGGCCR | 3 cut(s) | 776, 2382, 2418 |
| AcsI | RAATTY | 3 cut(s) | 226, 1492, 2479 |
| AcuI | CTGAAG | 6 cut(s) | 1706, 1793, 1941, 2013, 2193, 2544 |
| AfaI | GTAC | 4 cut(s) | 503, 1251, 1583, 2187 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 116, 639, 2239, 2731 |
| AflII | CTTAAG | 1 cut(s) | 758 |
| AflIII | ACRYGT | 1 cut(s) | 2197 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 517, 1972, 2037 |
| AhlI | ACTAGT | 1 cut(s) | 991 |
| AjiI | CACGTC | 1 cut(s) | 2554 |
| AjnI | CCWGG | 1 cut(s) | 2110 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1620, 1652 |
| Alw21I | GWGCWC | 3 cut(s) | 54, 1923, 2205 |
| Alw26I | GTCTC | 3 cut(s) | 791, 1426, 1757 |
| Alw44I | GTGCAC | 2 cut(s) | 1919, 2201 |
| AlwI | GGATC | 3 cut(s) | 1004, 2042, 2117 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 578 |
| Ama87I | CYCGRG | 2 cut(s) | 2239, 2402 |
| AoxI | GGCC | 5 cut(s) | 91, 776, 2382, 2418, 2776 |
| ApaLI | GTGCAC | 2 cut(s) | 1919, 2201 |
| ApoI | RAATTY | 3 cut(s) | 226, 1492, 2479 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1046, 1078 |
| AseI | ATTAAT | 3 cut(s) | 1257, 1517, 2393 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 726, 1851 |
| AspLEI | GCGC | 6 cut(s) | 499, 975, 1028, 1720, 2336, 2537 |
| AspS9I | GGNCC | 8 cut(s) | 60, 149, 642, 1199, 1453, 2399, 2662, 2722 |
| AsuC2I | CCSGG | 2 cut(s) | 147, 2438 |
| AsuHPI | GGTGA | 8 cut(s) | 442, 679, 1102, 1286, 2582, 2651, 2834, 2849 |
| AsuII | TTCGAA | 1 cut(s) | 524 |
| AvaI | CYCGRG | 2 cut(s) | 2239, 2402 |
| AvaII | GGWCC | 8 cut(s) | 60, 149, 642, 1199, 1453, 2399, 2662, 2722 |
| BaeGI | GKGCMC | 2 cut(s) | 1923, 2205 |
| BalI | TGGCCA | 1 cut(s) | 2384 |
| BanII | GRGCYC | 2 cut(s) | 2102, 2142 |
| BbsI | GAAGAC | 6 cut(s) | 48, 513, 938, 2443, 2694, 2757 |
| Bbv12I | GWGCWC | 3 cut(s) | 54, 1923, 2205 |
| BbvCI | CCTCAGC | 1 cut(s) | 384 |
| BccI | CCATC | 4 cut(s) | 800, 1190, 2552, 2768 |
| BceAI | ACGGC | 1 cut(s) | 2938 |
| BciT130I | CCWGG | 1 cut(s) | 2112 |
| BclI | TGATCA | 1 cut(s) | 1066 |
| BcnI | CCSGG | 2 cut(s) | 147, 2438 |
| BcoDI | GTCTC | 3 cut(s) | 791, 1426, 1757 |
| BcuI | ACTAGT | 1 cut(s) | 991 |
| BfaI | CTAG | 1 cut(s) | 992 |
| BfmI | CTRYAG | 1 cut(s) | 2538 |
| BfoI | RGCGCY | 2 cut(s) | 1029, 2538 |
| BfrI | CTTAAG | 1 cut(s) | 758 |
| BfuAI | ACCTGC | 3 cut(s) | 1702, 2371, 2531 |
| BglII | AGATCT | 2 cut(s) | 1533, 2443 |
| BlpI | GCTNAGC | 1 cut(s) | 2715 |
| BmcAI | AGTACT | 1 cut(s) | 2187 |
| Bme1390I | CCNGG | 3 cut(s) | 147, 2112, 2438 |
| Bme18I | GGWCC | 8 cut(s) | 60, 149, 642, 1199, 1453, 2399, 2662, 2722 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 517, 1972, 2037 |
| BmeT110I | CYCGRG | 2 cut(s) | 2239, 2402 |
| BmgBI | CACGTC | 1 cut(s) | 2554 |
| BmgT120I | GGNCC | 8 cut(s) | 60, 149, 642, 1199, 1453, 2399, 2662, 2722 |
| BmiI | GGNNCC | 3 cut(s) | 151, 644, 2401 |
| BmrFI | CCNGG | 3 cut(s) | 147, 2112, 2438 |
| BmrI | ACTGGG | 1 cut(s) | 1013 |
| BmuI | ACTGGG | 1 cut(s) | 1013 |
| BpiI | GAAGAC | 6 cut(s) | 48, 513, 938, 2443, 2694, 2757 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1091, 1123, 2396, 2428 |
| BpmI | CTGGAG | 3 cut(s) | 1408, 2133, 2964 |
| Bpu10I | CCTNAGC | 1 cut(s) | 384 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2715 |
| Bpu14I | TTCGAA | 1 cut(s) | 524 |
| BpuEI | CTTGAG | 2 cut(s) | 902, 1856 |
| BpuMI | CCSGG | 2 cut(s) | 147, 2438 |
| BsaAI | YACGTR | 1 cut(s) | 505 |
| BsaJI | CCNNGG | 4 cut(s) | 2220, 2421, 2436, 2730 |
| BsaWI | WCCGGW | 1 cut(s) | 57 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 56, 86 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 116, 639, 2239, 2731 |
| Bse1I | ACTGG | 2 cut(s) | 1008, 1395 |
| Bse3DI | GCAATG | 5 cut(s) | 627, 1435, 1662, 1933, 2763 |
| BseBI | CCWGG | 1 cut(s) | 2112 |
| BseDI | CCNNGG | 4 cut(s) | 2220, 2421, 2436, 2730 |
| BseGI | GGATG | 5 cut(s) | 1069, 1754, 2563, 2872, 2896 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 116, 639, 2239, 2731 |
| BseMI | GCAATG | 5 cut(s) | 627, 1435, 1662, 1933, 2763 |
| BseMII | CTCAG | 8 cut(s) | 375, 786, 1333, 1640, 1779, 2085, 2706, 2771 |
| BseNI | ACTGG | 2 cut(s) | 1008, 1395 |
| BseRI | GAGGAG | 6 cut(s) | 91, 401, 854, 1206, 1985, 2033 |
| BseSI | GKGCMC | 2 cut(s) | 1923, 2205 |
| BsgI | GTGCAG | 2 cut(s) | 972, 1704 |
| BshFI | GGCC | 5 cut(s) | 93, 778, 2384, 2420, 2778 |
| BsiHKAI | GWGCWC | 3 cut(s) | 54, 1923, 2205 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2239, 2402 |
| BsiSI | CCGG | 4 cut(s) | 58, 117, 147, 2438 |
| BslFI | GGGAC | 3 cut(s) | 135, 589, 628 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 116, 639, 2239, 2731 |
| BsmAI | GTCTC | 3 cut(s) | 791, 1426, 1757 |
| BsmFI | GGGAC | 3 cut(s) | 135, 589, 628 |
| BsmI | GAATGC | 1 cut(s) | 442 |
| BsnI | GGCC | 5 cut(s) | 93, 778, 2384, 2420, 2778 |
| BsoBI | CYCGRG | 2 cut(s) | 2239, 2402 |
| Bsp119I | TTCGAA | 1 cut(s) | 524 |
| Bsp1286I | GDGCHC | 5 cut(s) | 54, 1923, 2102, 2142, 2205 |
| Bsp143I | GATC | 9 cut(s) | 748, 1009, 1066, 1533, 2047, 2122, 2158, 2443, 2656 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2715 |
| Bsp19I | CCATGG | 1 cut(s) | 2220 |
| BspACI | CCGC | 9 cut(s) | 5, 27, 440, 509, 775, 1977, 2346, 2568, 2768 |
| BspANI | GGCC | 5 cut(s) | 93, 778, 2384, 2420, 2778 |
| BspCNI | CTCAG | 8 cut(s) | 376, 787, 1332, 1641, 1778, 2086, 2707, 2772 |
| BspLI | GGNNCC | 3 cut(s) | 151, 644, 2401 |
| BspMAI | CTGCAG | 1 cut(s) | 2542 |
| BspMI | ACCTGC | 3 cut(s) | 1702, 2371, 2531 |
| BspPI | GGATC | 3 cut(s) | 1004, 2042, 2117 |
| BspT104I | TTCGAA | 1 cut(s) | 524 |
| BspTI | CTTAAG | 1 cut(s) | 758 |
| BsrDI | GCAATG | 5 cut(s) | 627, 1435, 1662, 1933, 2763 |
| BsrI | ACTGG | 2 cut(s) | 1008, 1395 |
| BssECI | CCNNGG | 4 cut(s) | 2220, 2421, 2436, 2730 |
| BssMI | GATC | 9 cut(s) | 748, 1009, 1066, 1533, 2047, 2122, 2158, 2443, 2656 |
| BssT1I | CCWWGG | 1 cut(s) | 2220 |
| Bst2UI | CCWGG | 1 cut(s) | 2112 |
| Bst4CI | ACNGT | 5 cut(s) | 984, 2185, 2639, 2738, 2822 |
| Bst6I | CTCTTC | 6 cut(s) | 464, 527, 822, 1760, 2583, 3041 |
| BstAFI | CTTAAG | 1 cut(s) | 758 |
| BstBAI | YACGTR | 1 cut(s) | 505 |
| BstBI | TTCGAA | 1 cut(s) | 524 |
| BstC8I | GCNNGC | 4 cut(s) | 31, 408, 1683, 2108 |
| BstDSI | CCRYGG | 1 cut(s) | 2220 |
| BstF5I | GGATG | 5 cut(s) | 1069, 1754, 2563, 2872, 2896 |
| BstH2I | RGCGCY | 2 cut(s) | 1029, 2538 |
| BstHHI | GCGC | 6 cut(s) | 499, 975, 1028, 1720, 2336, 2537 |
| BstKTI | GATC | 9 cut(s) | 751, 1012, 1069, 1536, 2050, 2125, 2161, 2446, 2659 |
| BstMAI | GTCTC | 3 cut(s) | 791, 1426, 1757 |
| BstMBI | GATC | 9 cut(s) | 748, 1009, 1066, 1533, 2047, 2122, 2158, 2443, 2656 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 77, 220, 562, 1034, 1474, 1694, 1708, 1717, 1726 |
| BstNI | CCWGG | 1 cut(s) | 2112 |
| BstNSI | RCATGY | 2 cut(s) | 1746, 2201 |
| BstSCI | CCNGG | 3 cut(s) | 145, 2110, 2436 |
| BstSFI | CTRYAG | 1 cut(s) | 2538 |
| BstSLI | GKGCMC | 2 cut(s) | 1923, 2205 |
| BstSNI | TACGTA | 1 cut(s) | 505 |
| BstV2I | GAAGAC | 6 cut(s) | 48, 513, 938, 2443, 2694, 2757 |
| BstX2I | RGATCY | 3 cut(s) | 1009, 1533, 2443 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2396 |
| BstYI | RGATCY | 3 cut(s) | 1009, 1533, 2443 |
| BsuRI | GGCC | 5 cut(s) | 93, 778, 2384, 2420, 2778 |
| BtgI | CCRYGG | 1 cut(s) | 2220 |
| BtgZI | GCGATG | 1 cut(s) | 2934 |
| BtrI | CACGTC | 1 cut(s) | 2554 |
| BtsCI | GGATG | 5 cut(s) | 1069, 1754, 2563, 2872, 2896 |
| BtsI | GCAGTG | 1 cut(s) | 1092 |
| BtsIMutI | CAGTG | 4 cut(s) | 1092, 1564, 2713, 2743 |
| BveI | ACCTGC | 3 cut(s) | 1702, 2371, 2531 |
| Cac8I | GCNNGC | 4 cut(s) | 31, 408, 1683, 2108 |
| CaiI | CAGNNNCTG | 1 cut(s) | 578 |
| CfoI | GCGC | 6 cut(s) | 499, 975, 1028, 1720, 2336, 2537 |
| Cfr13I | GGNCC | 8 cut(s) | 60, 149, 642, 1199, 1453, 2399, 2662, 2722 |
| CpoI | CGGWCCG | 1 cut(s) | 60 |
| CseI | GACGC | 3 cut(s) | 1043, 1166, 2139 |
| Csp6I | GTAC | 4 cut(s) | 502, 1250, 1582, 2186 |
| CspI | CGGWCCG | 1 cut(s) | 60 |
| CviQI | GTAC | 4 cut(s) | 502, 1250, 1582, 2186 |
| DpnI | GATC | 9 cut(s) | 750, 1011, 1068, 1535, 2049, 2124, 2160, 2445, 2658 |
| DpnII | GATC | 9 cut(s) | 748, 1009, 1066, 1533, 2047, 2122, 2158, 2443, 2656 |
| DriI | GACNNNNNGTC | 3 cut(s) | 517, 1972, 2037 |
| EaeI | YGGCCR | 3 cut(s) | 776, 2382, 2418 |
| Eam1104I | CTCTTC | 6 cut(s) | 464, 527, 822, 1760, 2583, 3041 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 517, 1972, 2037 |
| EarI | CTCTTC | 6 cut(s) | 464, 527, 822, 1760, 2583, 3041 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Eco105I | TACGTA | 1 cut(s) | 505 |
| Eco130I | CCWWGG | 1 cut(s) | 2220 |
| Eco24I | GRGCYC | 2 cut(s) | 2102, 2142 |
| Eco32I | GATATC | 2 cut(s) | 544, 594 |
| Eco47I | GGWCC | 8 cut(s) | 60, 149, 642, 1199, 1453, 2399, 2662, 2722 |
| Eco57I | CTGAAG | 6 cut(s) | 1706, 1793, 1941, 2013, 2193, 2544 |
| Eco88I | CYCGRG | 2 cut(s) | 2239, 2402 |
| EcoO109I | RGGNCCY | 1 cut(s) | 642 |
| EcoRI | GAATTC | 1 cut(s) | 2479 |
| EcoRII | CCWGG | 1 cut(s) | 2110 |
| EcoRV | GATATC | 2 cut(s) | 544, 594 |
| EcoT14I | CCWWGG | 1 cut(s) | 2220 |
| EcoT22I | ATGCAT | 2 cut(s) | 697, 1744 |
| EcoT38I | GRGCYC | 2 cut(s) | 2102, 2142 |
| ErhI | CCWWGG | 1 cut(s) | 2220 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 752, 784 |
| FaqI | GGGAC | 3 cut(s) | 135, 589, 628 |
| FbaI | TGATCA | 1 cut(s) | 1066 |
| FblI | GTMKAC | 1 cut(s) | 2256 |
| FokI | GGATG | 5 cut(s) | 1056, 1761, 2570, 2879, 2903 |
| FriOI | GRGCYC | 2 cut(s) | 2102, 2142 |
| FspBI | CTAG | 1 cut(s) | 992 |
| GlaI | GCGC | 6 cut(s) | 498, 974, 1027, 1719, 2335, 2536 |
| GsuI | CTGGAG | 3 cut(s) | 1408, 2133, 2964 |
| HaeII | RGCGCY | 2 cut(s) | 1029, 2538 |
| HaeIII | GGCC | 5 cut(s) | 93, 778, 2384, 2420, 2778 |
| HapII | CCGG | 4 cut(s) | 58, 117, 147, 2438 |
| HgaI | GACGC | 3 cut(s) | 1043, 1166, 2139 |
| HhaI | GCGC | 6 cut(s) | 499, 975, 1028, 1720, 2336, 2537 |
| Hin6I | GCGC | 6 cut(s) | 497, 973, 1026, 1718, 2334, 2535 |
| HinP1I | GCGC | 6 cut(s) | 497, 973, 1026, 1718, 2334, 2535 |
| HincII | GTYRAC | 2 cut(s) | 997, 1159 |
| HindII | GTYRAC | 2 cut(s) | 997, 1159 |
| HindIII | AAGCTT | 2 cut(s) | 755, 2372 |
| HpaI | GTTAAC | 2 cut(s) | 997, 1159 |
| HpaII | CCGG | 4 cut(s) | 58, 117, 147, 2438 |
| HphI | GGTGA | 8 cut(s) | 442, 679, 1102, 1286, 2582, 2651, 2834, 2849 |
| Hpy166II | GTNNAC | 8 cut(s) | 997, 1105, 1159, 1672, 1921, 2203, 2257, 2351 |
| Hpy8I | GTNNAC | 8 cut(s) | 997, 1105, 1159, 1672, 1921, 2203, 2257, 2351 |
| Hpy99I | CGWCG | 3 cut(s) | 68, 2133, 2822 |
| HpyCH4III | ACNGT | 5 cut(s) | 984, 2185, 2639, 2738, 2822 |
| HpyCH4IV | ACGT | 5 cut(s) | 66, 504, 1126, 1500, 2553 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 77, 220, 562, 1034, 1474, 1694, 1708, 1717, 1726 |
| HpySE526I | ACGT | 5 cut(s) | 66, 504, 1126, 1500, 2553 |
| HspAI | GCGC | 6 cut(s) | 497, 973, 1026, 1718, 2334, 2535 |
| Ksp22I | TGATCA | 1 cut(s) | 1066 |
| KspAI | GTTAAC | 2 cut(s) | 997, 1159 |
| Kzo9I | GATC | 9 cut(s) | 748, 1009, 1066, 1533, 2047, 2122, 2158, 2443, 2656 |
| LmnI | GCTCC | 5 cut(s) | 187, 964, 970, 2176, 2945 |
| MaeI | CTAG | 1 cut(s) | 992 |
| MaeII | ACGT | 5 cut(s) | 66, 504, 1126, 1500, 2553 |
| MaeIII | GTNAC | 8 cut(s) | 667, 741, 903, 1264, 2029, 2639, 2822, 3036 |
| MalI | GATC | 9 cut(s) | 750, 1011, 1068, 1535, 2049, 2124, 2160, 2445, 2658 |
| MboI | GATC | 9 cut(s) | 748, 1009, 1066, 1533, 2047, 2122, 2158, 2443, 2656 |
| MflI | RGATCY | 3 cut(s) | 1009, 1533, 2443 |
| MhlI | GDGCHC | 5 cut(s) | 54, 1923, 2102, 2142, 2205 |
| MlsI | TGGCCA | 1 cut(s) | 2384 |
| MluCI | AATT | 8 cut(s) | 226, 722, 1361, 1492, 2355, 2390, 2394, 2479 |
| MluNI | TGGCCA | 1 cut(s) | 2384 |
| MlyI | GAGTC | 7 cut(s) | 527, 851, 1100, 1126, 1407, 1826, 1982 |
| MmeI | TCCRAC | 1 cut(s) | 87 |
| Mox20I | TGGCCA | 1 cut(s) | 2384 |
| Mph1103I | ATGCAT | 2 cut(s) | 697, 1744 |
| MroXI | GAANNNNTTC | 2 cut(s) | 726, 1851 |
| MscI | TGGCCA | 1 cut(s) | 2384 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1747, 1926 |
| Msp20I | TGGCCA | 1 cut(s) | 2384 |
| MspA1I | CMGCKG | 4 cut(s) | 775, 1477, 1688, 1979 |
| MspCI | CTTAAG | 1 cut(s) | 758 |
| MspI | CCGG | 4 cut(s) | 58, 117, 147, 2438 |
| MspR9I | CCNGG | 3 cut(s) | 147, 2112, 2438 |
| Mva1269I | GAATGC | 1 cut(s) | 442 |
| MvaI | CCWGG | 1 cut(s) | 2112 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 77, 220, 562, 1034, 1474, 1694, 1708, 1717, 1726 |
| NciI | CCSGG | 2 cut(s) | 147, 2438 |
| NcoI | CCATGG | 1 cut(s) | 2220 |
| NdeII | GATC | 9 cut(s) | 748, 1009, 1066, 1533, 2047, 2122, 2158, 2443, 2656 |
| NlaIV | GGNNCC | 3 cut(s) | 151, 644, 2401 |
| NmeAIII | GCCGAG | 2 cut(s) | 69, 2446 |
| NmuCI | GTSAC | 5 cut(s) | 667, 2029, 2639, 2822, 3036 |
| NsiI | ATGCAT | 2 cut(s) | 697, 1744 |
| NspI | RCATGY | 2 cut(s) | 1746, 2201 |
| NspV | TTCGAA | 1 cut(s) | 524 |
| PciI | ACATGT | 1 cut(s) | 2197 |
| PctI | GAATGC | 1 cut(s) | 442 |
| PdmI | GAANNNNTTC | 2 cut(s) | 726, 1851 |
| PfeI | GAWTC | 8 cut(s) | 8, 1349, 1367, 1546, 1940, 1952, 2407, 2609 |
| PleI | GAGTC | 7 cut(s) | 526, 850, 1100, 1126, 1406, 1825, 1981 |
| PpsI | GAGTC | 7 cut(s) | 526, 850, 1100, 1126, 1406, 1825, 1981 |
| Ppu21I | YACGTR | 1 cut(s) | 505 |
| PpuMI | RGGWCCY | 1 cut(s) | 642 |
| PscI | ACATGT | 1 cut(s) | 2197 |
| PshBI | ATTAAT | 3 cut(s) | 1257, 1517, 2393 |
| Psp5II | RGGWCCY | 1 cut(s) | 642 |
| Psp6I | CCWGG | 1 cut(s) | 2110 |
| PspGI | CCWGG | 1 cut(s) | 2110 |
| PspN4I | GGNNCC | 3 cut(s) | 151, 644, 2401 |
| PspPI | GGNCC | 8 cut(s) | 60, 149, 642, 1199, 1453, 2399, 2662, 2722 |
| PspPPI | RGGWCCY | 1 cut(s) | 642 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2240, 2272 |
| PstI | CTGCAG | 1 cut(s) | 2542 |
| PstNI | CAGNNNCTG | 1 cut(s) | 578 |
| PsuI | RGATCY | 3 cut(s) | 1009, 1533, 2443 |
| PvuII | CAGCTG | 2 cut(s) | 1477, 1688 |
| RsaI | GTAC | 4 cut(s) | 503, 1251, 1583, 2187 |
| RsaNI | GTAC | 4 cut(s) | 502, 1250, 1582, 2186 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1747, 1926 |
| Rsr2I | CGGWCCG | 1 cut(s) | 60 |
| RsrII | CGGWCCG | 1 cut(s) | 60 |
| Sau3AI | GATC | 9 cut(s) | 748, 1009, 1066, 1533, 2047, 2122, 2158, 2443, 2656 |
| Sau96I | GGNCC | 8 cut(s) | 60, 149, 642, 1199, 1453, 2399, 2662, 2722 |
| ScaI | AGTACT | 1 cut(s) | 2187 |
| SchI | GAGTC | 7 cut(s) | 527, 851, 1100, 1126, 1407, 1826, 1982 |
| ScrFI | CCNGG | 3 cut(s) | 147, 2112, 2438 |
| SduI | GDGCHC | 5 cut(s) | 54, 1923, 2102, 2142, 2205 |
| SfcI | CTRYAG | 1 cut(s) | 2538 |
| SfuI | TTCGAA | 1 cut(s) | 524 |
| SinI | GGWCC | 8 cut(s) | 60, 149, 642, 1199, 1453, 2399, 2662, 2722 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1747, 1926 |
| SmlI | CTYRAG | 3 cut(s) | 758, 881, 1835 |
| SmoI | CTYRAG | 3 cut(s) | 758, 881, 1835 |
| SnaBI | TACGTA | 1 cut(s) | 505 |
| SpeI | ACTAGT | 1 cut(s) | 991 |
| Sse9I | AATT | 8 cut(s) | 226, 722, 1361, 1492, 2355, 2390, 2394, 2479 |
| SsiI | CCGC | 9 cut(s) | 5, 27, 440, 509, 775, 1977, 2346, 2568, 2768 |
| SspMI | CTAG | 1 cut(s) | 992 |
| StyD4I | CCNGG | 3 cut(s) | 145, 2110, 2436 |
| StyI | CCWWGG | 1 cut(s) | 2220 |
| TaaI | ACNGT | 5 cut(s) | 984, 2185, 2639, 2738, 2822 |
| TaiI | ACGT | 5 cut(s) | 69, 507, 1129, 1503, 2556 |
| TaqI | TCGA | 8 cut(s) | 132, 393, 524, 1224, 1527, 1855, 2628, 3060 |
| TasI | AATT | 8 cut(s) | 226, 722, 1361, 1492, 2355, 2390, 2394, 2479 |
| TatI | WGTACW | 2 cut(s) | 1581, 2185 |
| TauI | GCSGC | 1 cut(s) | 778 |
| TfiI | GAWTC | 8 cut(s) | 8, 1349, 1367, 1546, 1940, 1952, 2407, 2609 |
| TscAI | CASTG | 4 cut(s) | 1092, 1564, 2713, 2743 |
| TseFI | GTSAC | 5 cut(s) | 667, 2029, 2639, 2822, 3036 |
| Tsp45I | GTSAC | 5 cut(s) | 667, 2029, 2639, 2822, 3036 |
| TspGWI | ACGGA | 1 cut(s) | 2941 |
| TspRI | CASTG | 4 cut(s) | 1092, 1564, 2713, 2743 |
| Vha464I | CTTAAG | 1 cut(s) | 758 |
| VneI | GTGCAC | 2 cut(s) | 1919, 2201 |
| VpaK11BI | GGWCC | 8 cut(s) | 60, 149, 642, 1199, 1453, 2399, 2662, 2722 |
| VspI | ATTAAT | 3 cut(s) | 1257, 1517, 2393 |
| XapI | RAATTY | 3 cut(s) | 226, 1492, 2479 |
| XceI | RCATGY | 2 cut(s) | 1746, 2201 |
| XmiI | GTMKAC | 1 cut(s) | 2256 |
| XmnI | GAANNNNTTC | 2 cut(s) | 726, 1851 |
| XspI | CTAG | 1 cut(s) | 992 |
| ZrmI | AGTACT | 1 cut(s) | 2187 |
| Zsp2I | ATGCAT | 2 cut(s) | 697, 1744 |