Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008077

Physical Location & Seq

Genomic Coordinates Reverse (-)

39299847 .. 39307493

Gene Structure 7647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG367700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTGCAATTTCCTTGAAGTGATCTCTGTTGATGCTTTGCCGCCGGGTTGGTCGTTGTTGCCTCATGCCACCAACATTGGAGTTTGGTACGAAGAAGCTGAAGAATTGGAAGGCAAAGTGGTCGGGAAGATGAAGAAAGCCGAGGCAAGGAGTGACAAGGAGTGGGGTGGTGAGGTGGCCAAGAAGCGAAAGCTTGGAGAGAGGTCGATGGCACAGTACACGGCGGATTATGAGGCTTCGAAAGGGAAGAGTGGGGATGTCAAGCTATTGCTGACCACACAGAGGTCAGGGACTGCTTCTGATAAGATTTCGGCGTTTTCGGTGTTGGTTGGGGATGATCCCATTGCCAATTTGAGGTCCGATTCCAAAAGGGTATGGGATGCTAACATCTCCGCAAAGATGCTAGCAATTAGGCTTTGCTATAGGTGTACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBF

Protein Analysis

145

Amino Acids

15.94

Weight (kDa)

8.4

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72440
fragaria_vesca	FvH4_6g35460 FvH4_6g35460
malus_domestica	MD09G1175700.v1.1 MD17G1151100.v1.1
prunus_persica	Prupe.3G034700_v2.0.a1 Prupe.3G034700_v2.0.a1 Prupe.3G034700_v2.0.a1
pyrus_communis	pycom09g09340 pycom09g09350 pycom17g14440
rosa_chinensis	RchiOBHm_Chr2g0147011
rosa_laevigata	RLG00000020238
rosa_multiflora	Rmu_co8429717.1_g000001 Rmu_sc0001880.1_g000035
rosa_roxburghii	Rroxscaffold_2G00099760
rosa_rugosa	Rorug02G0398000
rosa_samantha	Rh2AG455000 Rh2BG467300 Rh2CG442400 Rh2DG476500 Rh7BG367700
rosa_wichuraiana	Rw2G037120 Rw2G037220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	41, 224, 393
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	3 cut(s)	89, 218, 430
AfiI	CCNNNNNNNGG	3 cut(s)	147, 282, 354
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	4 cut(s)	98, 193, 265, 435
AluI	AGCT	4 cut(s)	98, 193, 265, 435
AlwI	GGATC	1 cut(s)	332
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	239
AsuNHI	GCTAGC	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	357
BalI	TGGCCA	1 cut(s)	179
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	237
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BcnI	CCSGG	1 cut(s)	45
BfaI	CTAG	3 cut(s)	404, 432, 436
BfmI	CTRYAG	1 cut(s)	421
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	3 cut(s)	22, 370, 390
BmtI	GCTAGC	1 cut(s)	407
Bpu14I	TTCGAA	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 282, 354
Bse3DI	GCAATG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	3 cut(s)	262, 340, 385
BseLI	CCNNNNNNNGG	3 cut(s)	147, 282, 354
BseMI	GCAATG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	147, 282, 354
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	21, 337
BspACI	CCGC	3 cut(s)	41, 224, 393
BspANI	GGCC	1 cut(s)	179
BspOI	GCTAGC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	2 cut(s)	21, 337
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	262, 340, 385
BstKTI	GATC	2 cut(s)	24, 340
BstMBI	GATC	2 cut(s)	21, 337
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	3 cut(s)	262, 340, 385
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	357
Csp6I	GTAC	3 cut(s)	88, 217, 429
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	8 cut(s)	98, 140, 179, 193, 236, 265, 415, 435
CviKI_1	RGCY	8 cut(s)	98, 140, 179, 193, 236, 265, 415, 435
CviQI	GTAC	3 cut(s)	88, 217, 429
DpnI	GATC	2 cut(s)	23, 339
DpnII	GATC	2 cut(s)	21, 337
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	120
FaeI	CATG	1 cut(s)	68
FaiI	YATR	4 cut(s)	66, 231, 376, 423
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	3 cut(s)	269, 347, 392
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	3 cut(s)	404, 432, 436
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	219, 429
Hpy188I	TCNGA	2 cut(s)	301, 361
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	2 cut(s)	219, 429
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	21, 337
LpnPI	CCDG	2 cut(s)	57, 273
LweI	GCATC	3 cut(s)	22, 370, 390
MaeI	CTAG	3 cut(s)	404, 432, 436
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	2 cut(s)	23, 339
MboI	GATC	2 cut(s)	21, 337
MboII	GAAGA	5 cut(s)	104, 113, 139, 145, 259
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	4 cut(s)	7, 104, 349, 408
MluNI	TGGCCA	1 cut(s)	179
MnlI	CCTC	7 cut(s)	72, 136, 166, 195, 226, 276, 348
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	179
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	45
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	21, 337
NheI	GCTAGC	1 cut(s)	403
NlaIII	CATG	1 cut(s)	68
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	152
NspV	TTCGAA	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	357
PstNI	CAGNNNCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	89, 218, 430
RsaNI	GTAC	3 cut(s)	88, 217, 429
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	21, 337
Sau96I	GGNCC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	9 cut(s)	100, 177, 195, 206, 267, 287, 359, 428, 437
SfaNI	GCATC	3 cut(s)	22, 370, 390
SfcI	CTRYAG	1 cut(s)	421
SfuI	TTCGAA	1 cut(s)	239
SinI	GGWCC	1 cut(s)	357
Sse9I	AATT	4 cut(s)	7, 104, 349, 408
SsiI	CCGC	3 cut(s)	41, 224, 393
SspMI	CTAG	3 cut(s)	404, 432, 436
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	206, 239
TasI	AATT	4 cut(s)	7, 104, 349, 408
TatI	WGTACW	2 cut(s)	216, 428
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	357
XspI	CTAG	3 cut(s)	404, 432, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.