Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008077

Physical Location & Seq

Genomic Coordinates Forward (+)

7488145 .. 7489842

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09350.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAATACGTCTAAGGCAGAAATGTTTATCGGACTTATTCTGAGGGCAATGAAAAATGATCTGAACTTGAAGCGTGCAGCTGCTTTCGCAAAGCGTGTATTGCAGGTTGCGCTTCAGCAGCCACCTCAATATGCATGTGGATGCCTCTTCCTCCTTTCAGAAGTTCTCAAGGCAAGACCCCCATTATGGAACATGGTGCTCCAGAATGAGTCAGTTGATGATGAACTTGAGCATTTTAAAGATGTTCGAGAAGAAACTGATGATAACCCCACCCCTGTCCCAGAGAAACAGGAACTCGATGTTGAGCTTGGACACAGCAATGATGCTGCCAATTCTGACCATGATTCTTCAGAAGATGATAACGAATCCACCGCCTCTTATTCTGAAGGTGAAGGTTCTGATGAAGCAGAGGAGTTTTTTGTGACAAAAGATCGAAATGATTCCAAACCAACCCCTGCTAGTAATGTGCAACCACCACAAGCATCATCCGAGAAGCCTCGCTTGCCTGGAGACTATGATCCACGACGCAGAGAACCCTCTTATTGTAATGCGGATCGTGTGAGCTGGTGGGAGCTGACAGTACTTGCTTCACATGTGCACCCTTCGGTTTCAACCATGGCAAAGACCCTACTCTCTGGGGCAAACATTGTCTACAATGGAAACCCGCTGAATGATCTATCACTTACTGCTTTTCTGGACAAGTTTATGGAGAAGAAACCAAAGCAAAGCTCATGGCATGGTGGTTCACAAATTGAACCTGCGAAAAAGGTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBF

Protein Analysis

259

Amino Acids

28.76

Weight (kDa)

4.89

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72440
fragaria_vesca	FvH4_6g35460 FvH4_6g35460
malus_domestica	MD09G1175700.v1.1 MD17G1151100.v1.1
prunus_persica	Prupe.3G034700_v2.0.a1 Prupe.3G034700_v2.0.a1 Prupe.3G034700_v2.0.a1
pyrus_communis	pycom09g09340 pycom09g09350 pycom17g14440
rosa_chinensis	RchiOBHm_Chr2g0147011
rosa_laevigata	RLG00000020238
rosa_multiflora	Rmu_co8429717.1_g000001 Rmu_sc0001880.1_g000035
rosa_roxburghii	Rroxscaffold_2G00099760
rosa_rugosa	Rorug02G0398000
rosa_samantha	Rh2AG455000 Rh2BG467300 Rh2CG442400 Rh2DG476500 Rh7BG367700
rosa_wichuraiana	Rw2G037120 Rw2G037220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	94, 766
AccI	GTMKAC	1 cut(s)	651
AciI	CCGC	3 cut(s)	372, 551, 665
AclWI	GGATC	2 cut(s)	512, 561
AcuI	CTGAAG	3 cut(s)	98, 333, 405
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	3 cut(s)	70, 612, 755
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	5 cut(s)	80, 307, 564, 574, 729
AluI	AGCT	5 cut(s)	80, 307, 564, 574, 729
Alw21I	GWGCWC	2 cut(s)	201, 600
Alw26I	GTCTC	1 cut(s)	504
Alw44I	GTGCAC	1 cut(s)	596
AlwI	GGATC	2 cut(s)	512, 561
ApaLI	GTGCAC	1 cut(s)	596
ApeKI	GCWGC	4 cut(s)	77, 80, 118, 326
Asp700I	GAANNNNTTC	1 cut(s)	439
AspLEI	GCGC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	600
Bbv12I	GWGCWC	2 cut(s)	201, 600
BbvI	GCAGC	4 cut(s)	67, 89, 130, 313
BciT130I	CCWGG	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	504
BfaI	CTAG	1 cut(s)	459
BfuAI	ACCTGC	2 cut(s)	94, 766
BisI	GCNGC	4 cut(s)	78, 81, 119, 327
BlsI	GCNGC	4 cut(s)	79, 82, 120, 328
BmcAI	AGTACT	1 cut(s)	582
Bme1390I	CCNGG	1 cut(s)	507
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	3 cut(s)	131, 313, 491
BpmI	CTGGAG	2 cut(s)	185, 528
BpuEI	CTTGAG	2 cut(s)	152, 248
BsaJI	CCNNGG	1 cut(s)	615
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse3DI	GCAATG	2 cut(s)	54, 325
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	615
BseGI	GGATG	2 cut(s)	146, 485
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	2 cut(s)	54, 325
BseMII	CTCAG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	600
BseXI	GCAGC	4 cut(s)	67, 89, 130, 313
BsgI	GTGCAG	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	201, 600
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	201, 600
Bsp143I	GATC	5 cut(s)	58, 430, 517, 553, 673
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	3 cut(s)	372, 551, 665
BspCNI	CTCAG	1 cut(s)	33
BspMI	ACCTGC	2 cut(s)	94, 766
BspPI	GGATC	2 cut(s)	512, 561
BsrDI	GCAATG	2 cut(s)	54, 325
BssECI	CCNNGG	1 cut(s)	615
BssMI	GATC	5 cut(s)	58, 430, 517, 553, 673
BssT1I	CCWWGG	1 cut(s)	615
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	75, 503
BstDEI	CTNAG	2 cut(s)	12, 41
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	2 cut(s)	146, 485
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	5 cut(s)	61, 433, 520, 556, 676
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	5 cut(s)	58, 430, 517, 553, 673
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 100, 109, 118, 502
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	2 cut(s)	138, 596
BstSCI	CCNGG	1 cut(s)	505
BstSLI	GKGCMC	1 cut(s)	600
BstV1I	GCAGC	4 cut(s)	67, 89, 130, 313
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	2 cut(s)	146, 485
BveI	ACCTGC	2 cut(s)	94, 766
Cac8I	GCNNGC	2 cut(s)	75, 503
CfoI	GCGC	1 cut(s)	112
CseI	GACGC	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	581
CviAII	CATG	7 cut(s)	135, 193, 341, 593, 616, 732, 737
CviJI	RGCY	7 cut(s)	80, 121, 307, 496, 564, 574, 729
CviKI_1	RGCY	7 cut(s)	80, 121, 307, 496, 564, 574, 729
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	2 cut(s)	12, 41
DpnI	GATC	5 cut(s)	60, 432, 519, 555, 675
DpnII	GATC	5 cut(s)	58, 430, 517, 553, 673
DraI	TTTAAA	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	615
Eco57I	CTGAAG	3 cut(s)	98, 333, 405
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	7 cut(s)	138, 196, 344, 596, 619, 735, 740
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	7 cut(s)	134, 192, 340, 592, 615, 731, 736
FauI	CCCGC	1 cut(s)	672
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	4 cut(s)	78, 81, 119, 327
FokI	GGATG	2 cut(s)	153, 472
Fsp4HI	GCNGC	4 cut(s)	78, 81, 119, 327
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	4 cut(s)	78, 81, 119, 327
GsuI	CTGGAG	2 cut(s)	185, 528
HgaI	GACGC	1 cut(s)	534
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	7 cut(s)	138, 196, 344, 596, 619, 735, 740
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	4 cut(s)	209, 344, 365, 440
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	3 cut(s)	598, 652, 746
Hpy188I	TCNGA	9 cut(s)	32, 42, 63, 160, 337, 352, 385, 400, 490
Hpy188III	TCNNGA	4 cut(s)	202, 248, 695, 774
Hpy8I	GTNNAC	3 cut(s)	598, 652, 746
Hpy99I	CGWCG	1 cut(s)	528
HpyAV	CCTTC	3 cut(s)	380, 386, 612
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	5 cut(s)	77, 103, 134, 469, 598
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 100, 109, 118, 502
HpyF3I	CTNAG	2 cut(s)	12, 41
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	7 cut(s)	138, 196, 344, 596, 619, 735, 740
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	5 cut(s)	58, 430, 517, 553, 673
LmnI	GCTCC	2 cut(s)	204, 571
Lsp1109I	GCAGC	4 cut(s)	67, 89, 130, 313
LweI	GCATC	3 cut(s)	131, 313, 491
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	5 cut(s)	60, 432, 519, 555, 675
MboI	GATC	5 cut(s)	58, 430, 517, 553, 673
MboII	GAAGA	5 cut(s)	139, 263, 339, 365, 724
MhlI	GDGCHC	2 cut(s)	201, 600
MluCI	AATT	2 cut(s)	331, 750
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	8 cut(s)	36, 135, 155, 161, 385, 403, 507, 547
Mph1103I	ATGCAT	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	439
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	2 cut(s)	139, 318
MspA1I	CMGCKG	2 cut(s)	80, 667
MspR9I	CCNGG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	5 cut(s)	86, 100, 109, 118, 502
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	5 cut(s)	58, 430, 517, 553, 673
NlaIII	CATG	7 cut(s)	138, 196, 344, 596, 619, 735, 740
NmuCI	GTSAC	1 cut(s)	421
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	2 cut(s)	138, 596
PciI	ACATGT	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	439
PfeI	GAWTC	3 cut(s)	344, 365, 440
PkrI	GCNGC	4 cut(s)	79, 82, 120, 328
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PscI	ACATGT	1 cut(s)	592
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
RseI	CAYNNNNRTG	2 cut(s)	139, 318
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	4 cut(s)	78, 81, 119, 327
Sau3AI	GATC	5 cut(s)	58, 430, 517, 553, 673
ScaI	AGTACT	1 cut(s)	582
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	201, 600
SfaNI	GCATC	3 cut(s)	131, 313, 491
SmiMI	CAYNNNNRTG	2 cut(s)	139, 318
SmlI	CTYRAG	2 cut(s)	167, 227
SmoI	CTYRAG	2 cut(s)	167, 227
Sse9I	AATT	2 cut(s)	331, 750
SsiI	CCGC	3 cut(s)	372, 551, 665
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	247, 297, 433
TasI	AATT	2 cut(s)	331, 750
TatI	WGTACW	1 cut(s)	580
TfiI	GAWTC	3 cut(s)	344, 365, 440
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	4 cut(s)	77, 80, 118, 326
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	4 cut(s)	17, 65, 237, 417
VneI	GTGCAC	1 cut(s)	596
XceI	RCATGY	2 cut(s)	138, 596
XmiI	GTMKAC	1 cut(s)	651
XmnI	GAANNNNTTC	1 cut(s)	439
XspI	CTAG	1 cut(s)	459
ZrmI	AGTACT	1 cut(s)	582
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.