Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008077

Physical Location & Seq

Genomic Coordinates Forward (+)

7483290 .. 7488038

Gene Structure 4749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09340.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGGCGGATTCTAAATCAAAGAAATCCGCTAGCAACCCAGAAGACATAGATCACCTCCGGTCCGACGTAGCCTCCTTCGCTTCCTCTCTCGGTCTCGCAACGTCTCTCCCTTCCTCCGGCTTCAACGATGTCGATTTTCGCAATCCCGGTCCCAAAAAACCCCAAAGGAAGTCCAAACCAGCTCCAATCCCAAACCCCACCAAAAACCAGAAGCCAAACAAGCCGAATTTCAAACCCAATGAAAACCAGAAGCCGAAACTCACACTTTCTTCACTGGAGGAAAACAGCAGCAAGGACAGAGCGAGAAACTTTGAGAAGTTTAAGAACCTCCCGAAGCTGCCATTGATGTCGGCGAACAACTTGGGGGTGTGGTATGAGGAAGCTGAGGAATTGGAAGGCAAGGTGCTTGTGGGTGGGAAGAAAGTGGAGGTGAAGAATGCGGAGGAGTGGAAGGGTGTGGTGGCAAAGAAGAAAGAGCTTGGAGAGAGGTTAATGGCGCAGTACGTAGCGGACTACGAGTCATCGAAAGGGAAGAGTGGGGATATTAAGCTTTTGCTTACCACACAGAGGTCCGGAACTGCATCGGATAAGATATCGGCATTTTCGGTGTTGGTTGGGGATAATCCCATTGCCAACATGAGGTCCCTTGACGCACTTATAGGAATGGTGACATCCAAAGTGGGAAAGCGATATGCATTTGCAGGTTTTGAAGCATTGAGAGAATTGTTTCTTACAAGTTTATTACCTGATCGCAAGCTTAAGAACCTCATACAGCAGCCATTAAATCATGTTCCAGAGACAAAAGATGGTTATTCTCTTCTTCTTCTATGGTATTGGGAGGAGTGCTTGAAACAAAGGTATGAACGCTATGTTTTTGCTCTTGAGGAAGCATCAAAAGACATGTTACCTGAACTTAAAAACAAGGCATTGAAGACTATATACGTGCTGCTAAAGAATAAATCAGAGCAGGAGCGTAGATTACTGTCTGCGCTAGTTAACAAACTGGGAGATCCTAAAAATAAGGGGGCATCTGATGCTGATTTTCACTTATCAAACCTTTTGTCTGATCATCCAAACATGAAGGCAGTGGTGATCGACGAGGTGGACTCTTTTCTCTTTCGCCCACGTTTGACTCCACAAGCAAAATATCATGCAGTTAACTTTCTGAGCCAAATGCGTCTAACTCATAAAGGAAATGGACCAAAGGTGGCAAAACGTTTAATCGATGTTTATTTTTCACTTTTCAAGGTACTTATTAATGAGGCTGCTGCTGGTGAAAAGATGGATAAAAAAGGGAAAGCATGGTCTAAAAAGCCACTCAGTTCTAGTGAGGATAAGAGTTCATCGGATTCTCATGTTGAATTGGATTCACGCCTTCTGTCAGCTCTACTGGTGTCAACAGAGCGTTTCCCTTTGTCTCTAGCAATGAGGCTGATGACATTGTTGAGGTCCAAACACCAATGCTTTTCCAGCTGGTTCATTCTAAGAATTTTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBF

Protein Analysis

500

Amino Acids

56.09

Weight (kDa)

9.62

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72440
fragaria_vesca	FvH4_6g35460 FvH4_6g35460
malus_domestica	MD09G1175700.v1.1 MD17G1151100.v1.1
prunus_persica	Prupe.3G034700_v2.0.a1 Prupe.3G034700_v2.0.a1 Prupe.3G034700_v2.0.a1
pyrus_communis	pycom09g09340 pycom09g09350 pycom17g14440
rosa_chinensis	RchiOBHm_Chr2g0147011
rosa_laevigata	RLG00000020238
rosa_multiflora	Rmu_co8429717.1_g000001 Rmu_sc0001880.1_g000035
rosa_roxburghii	Rroxscaffold_2G00099760
rosa_rugosa	Rorug02G0398000
rosa_samantha	Rh2AG455000 Rh2BG467300 Rh2CG442400 Rh2DG476500 Rh7BG367700
rosa_wichuraiana	Rw2G037120 Rw2G037220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	692
AccIII	TCCGGA	1 cut(s)	572
AciI	CCGC	4 cut(s)	5, 27, 440, 509
AclI	AACGTT	1 cut(s)	1216
AclWI	GGATC	1 cut(s)	1004
AcsI	RAATTY	2 cut(s)	226, 1488
AfaI	GTAC	2 cut(s)	503, 1251
AfiI	CCNNNNNNNGG	3 cut(s)	116, 567, 639
AflII	CTTAAG	1 cut(s)	758
AflIII	ACRYGT	1 cut(s)	900
AgsI	TTSAA	7 cut(s)	124, 232, 710, 850, 931, 1246, 1361
AhdI	GACNNNNNGTC	1 cut(s)	517
AluBI	AGCT	8 cut(s)	182, 337, 383, 478, 550, 757, 1385, 1473
AluI	AGCT	8 cut(s)	182, 337, 383, 478, 550, 757, 1385, 1473
Alw26I	GTCTC	4 cut(s)	98, 108, 791, 1422
AlwI	GGATC	1 cut(s)	1004
Aor13HI	TCCGGA	1 cut(s)	572
ApeKI	GCWGC	6 cut(s)	288, 337, 775, 946, 1265, 1268
ApoI	RAATTY	2 cut(s)	226, 1488
ArsI	GACNNNNNNTTYG	2 cut(s)	1046, 1078
AseI	ATTAAT	1 cut(s)	1257
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	2 cut(s)	499, 991
AspS9I	GGNCC	6 cut(s)	60, 149, 570, 642, 1199, 1449
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	5 cut(s)	44, 442, 679, 1102, 1286
AsuNHI	GCTAGC	1 cut(s)	29
AvaII	GGWCC	6 cut(s)	60, 149, 570, 642, 1199, 1449
BarI	GAAGNNNNNNTAC	2 cut(s)	923, 955
BbsI	GAAGAC	2 cut(s)	48, 938
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	6 cut(s)	300, 324, 787, 933, 1252, 1255
BccI	CCATC	2 cut(s)	800, 1276
BclI	TGATCA	1 cut(s)	1066
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	4 cut(s)	98, 108, 791, 1422
BfaI	CTAG	4 cut(s)	30, 992, 1326, 1421
BfrI	CTTAAG	1 cut(s)	758
BfuAI	ACCTGC	1 cut(s)	692
BisI	GCNGC	6 cut(s)	289, 338, 776, 947, 1266, 1269
BlsI	GCNGC	6 cut(s)	290, 339, 777, 948, 1267, 1270
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	6 cut(s)	60, 149, 570, 642, 1199, 1449
BmeRI	GACNNNNNGTC	1 cut(s)	517
BmgT120I	GGNCC	6 cut(s)	60, 149, 570, 642, 1199, 1449
BmiI	GGNNCC	2 cut(s)	151, 644
BmrFI	CCNGG	1 cut(s)	147
BmrI	ACTGGG	1 cut(s)	1013
BmsI	GCATC	4 cut(s)	590, 899, 1024, 1037
BmtI	GCTAGC	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	1013
BpiI	GAAGAC	2 cut(s)	48, 938
BplI	GAGNNNNNCTC	2 cut(s)	1091, 1123
BpmI	CTGGAG	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	902
BpuMI	CCSGG	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	1224
BsaAI	YACGTR	2 cut(s)	505, 943
BsaI	GGTCTC	1 cut(s)	98
BsaWI	WCCGGW	2 cut(s)	57, 572
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 567, 639
Bse1I	ACTGG	3 cut(s)	279, 1008, 1395
Bse3DI	GCAATG	2 cut(s)	627, 1431
BseAI	TCCGGA	1 cut(s)	572
BseCI	ATCGAT	1 cut(s)	1224
BseGI	GGATG	2 cut(s)	671, 1069
BseLI	CCNNNNNNNGG	3 cut(s)	116, 567, 639
BseMI	GCAATG	2 cut(s)	627, 1431
BseMII	CTCAG	3 cut(s)	375, 1157, 1333
BseNI	ACTGG	3 cut(s)	279, 1008, 1395
BseRI	GAGGAG	2 cut(s)	458, 854
BseXI	GCAGC	6 cut(s)	300, 324, 787, 933, 1252, 1255
BshVI	ATCGAT	1 cut(s)	1224
BsiSI	CCGG	4 cut(s)	58, 117, 147, 573
BslFI	GGGAC	2 cut(s)	135, 628
BslI	CCNNNNNNNGG	3 cut(s)	116, 567, 639
BsmAI	GTCTC	4 cut(s)	98, 108, 791, 1422
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	2 cut(s)	135, 628
BsmI	GAATGC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	98
Bsp13I	TCCGGA	1 cut(s)	572
Bsp143I	GATC	5 cut(s)	49, 748, 1009, 1066, 1092
BspACI	CCGC	4 cut(s)	5, 27, 440, 509
BspCNI	CTCAG	3 cut(s)	376, 1158, 1332
BspDI	ATCGAT	1 cut(s)	1224
BspEI	TCCGGA	1 cut(s)	572
BspLI	GGNNCC	2 cut(s)	151, 644
BspMI	ACCTGC	1 cut(s)	692
BspOI	GCTAGC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	1004
BspTI	CTTAAG	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	2 cut(s)	627, 1431
BsrI	ACTGG	3 cut(s)	279, 1008, 1395
BssMI	GATC	5 cut(s)	49, 748, 1009, 1066, 1092
Bst4CI	ACNGT	1 cut(s)	984
Bst6I	CTCTTC	2 cut(s)	527, 822
BstAFI	CTTAAG	1 cut(s)	758
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstBAI	YACGTR	2 cut(s)	505, 943
BstC8I	GCNNGC	2 cut(s)	31, 755
BstDEI	CTNAG	4 cut(s)	384, 1166, 1319, 1484
BstF5I	GGATG	2 cut(s)	671, 1069
BstHHI	GCGC	2 cut(s)	499, 991
BstKTI	GATC	5 cut(s)	52, 751, 1012, 1069, 1095
BstMAI	GTCTC	4 cut(s)	98, 108, 791, 1422
BstMBI	GATC	5 cut(s)	49, 748, 1009, 1066, 1092
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 220, 1034, 1470
BstNSI	RCATGY	1 cut(s)	904
BstSCI	CCNGG	1 cut(s)	145
BstSNI	TACGTA	1 cut(s)	505
BstV1I	GCAGC	6 cut(s)	300, 324, 787, 933, 1252, 1255
BstV2I	GAAGAC	2 cut(s)	48, 938
BstX2I	RGATCY	1 cut(s)	1009
BstYI	RGATCY	1 cut(s)	1009
Bsu15I	ATCGAT	1 cut(s)	1224
BsuTUI	ATCGAT	1 cut(s)	1224
BtsCI	GGATG	2 cut(s)	671, 1069
BtsI	GCAGTG	1 cut(s)	1092
BtsIMutI	CAGTG	2 cut(s)	272, 1092
BveI	ACCTGC	1 cut(s)	692
Cac8I	GCNNGC	2 cut(s)	31, 755
CfoI	GCGC	2 cut(s)	499, 991
Cfr13I	GGNCC	6 cut(s)	60, 149, 570, 642, 1199, 1449
ClaI	ATCGAT	1 cut(s)	1224
CpoI	CGGWCCG	1 cut(s)	60
CseI	GACGC	2 cut(s)	659, 1166
Csp6I	GTAC	2 cut(s)	502, 1250
CspI	CGGWCCG	1 cut(s)	60
CviAII	CATG	7 cut(s)	637, 788, 901, 1078, 1151, 1302, 1355
CviQI	GTAC	2 cut(s)	502, 1250
DdeI	CTNAG	4 cut(s)	384, 1166, 1319, 1484
DpnI	GATC	5 cut(s)	51, 750, 1011, 1068, 1094
DpnII	GATC	5 cut(s)	49, 748, 1009, 1066, 1092
DriI	GACNNNNNGTC	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	527, 822
Eam1105I	GACNNNNNGTC	1 cut(s)	517
EarI	CTCTTC	2 cut(s)	527, 822
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	505
Eco31I	GGTCTC	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	594
Eco47I	GGWCC	6 cut(s)	60, 149, 570, 642, 1199, 1449
EcoO109I	RGGNCCY	1 cut(s)	642
EcoRV	GATATC	1 cut(s)	594
EcoT22I	ATGCAT	1 cut(s)	697
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	7 cut(s)	640, 791, 904, 1081, 1154, 1305, 1358
FaqI	GGGAC	2 cut(s)	135, 628
FatI	CATG	7 cut(s)	636, 787, 900, 1077, 1150, 1301, 1354
FbaI	TGATCA	1 cut(s)	1066
Fnu4HI	GCNGC	6 cut(s)	289, 338, 776, 947, 1266, 1269
FokI	GGATG	2 cut(s)	658, 1056
Fsp4HI	GCNGC	6 cut(s)	289, 338, 776, 947, 1266, 1269
FspBI	CTAG	4 cut(s)	30, 992, 1326, 1421
GlaI	GCGC	2 cut(s)	498, 990
GluI	GCNGC	6 cut(s)	289, 338, 776, 947, 1266, 1269
GsuI	CTGGAG	1 cut(s)	296
HapII	CCGG	4 cut(s)	58, 117, 147, 573
HgaI	GACGC	2 cut(s)	659, 1166
HhaI	GCGC	2 cut(s)	499, 991
Hin1II	CATG	7 cut(s)	640, 791, 904, 1081, 1154, 1305, 1358
Hin6I	GCGC	2 cut(s)	497, 989
HinP1I	GCGC	2 cut(s)	497, 989
HincII	GTYRAC	3 cut(s)	997, 1159, 1398
HindII	GTYRAC	3 cut(s)	997, 1159, 1398
HindIII	AAGCTT	2 cut(s)	548, 755
HinfI	GANTC	6 cut(s)	8, 518, 1106, 1132, 1349, 1367
HpaI	GTTAAC	2 cut(s)	997, 1159
HpaII	CCGG	4 cut(s)	58, 117, 147, 573
HphI	GGTGA	5 cut(s)	44, 442, 679, 1102, 1286
Hpy166II	GTNNAC	4 cut(s)	997, 1105, 1159, 1398
Hpy188I	TCNGA	7 cut(s)	64, 586, 964, 1033, 1066, 1167, 1348
Hpy188III	TCNNGA	4 cut(s)	331, 573, 794, 881
Hpy8I	GTNNAC	4 cut(s)	997, 1105, 1159, 1398
Hpy99I	CGWCG	2 cut(s)	68, 1100
HpyAV	CCTTC	6 cut(s)	85, 120, 389, 445, 1075, 1385
HpyCH4III	ACNGT	1 cut(s)	984
HpyCH4IV	ACGT	6 cut(s)	66, 101, 504, 942, 1126, 1216
HpyCH4V	TGCA	4 cut(s)	581, 695, 701, 1154
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 220, 1034, 1470
HpyF3I	CTNAG	4 cut(s)	384, 1166, 1319, 1484
HpySE526I	ACGT	6 cut(s)	66, 101, 504, 942, 1126, 1216
Hsp92II	CATG	7 cut(s)	640, 791, 904, 1081, 1154, 1305, 1358
HspAI	GCGC	2 cut(s)	497, 989
Kpn2I	TCCGGA	1 cut(s)	572
Ksp22I	TGATCA	1 cut(s)	1066
KspAI	GTTAAC	2 cut(s)	997, 1159
Kzo9I	GATC	5 cut(s)	49, 748, 1009, 1066, 1092
LmnI	GCTCC	2 cut(s)	187, 970
Lsp1109I	GCAGC	6 cut(s)	300, 324, 787, 933, 1252, 1255
LweI	GCATC	4 cut(s)	590, 899, 1024, 1037
MaeI	CTAG	4 cut(s)	30, 992, 1326, 1421
MaeII	ACGT	6 cut(s)	66, 101, 504, 942, 1126, 1216
MaeIII	GTNAC	2 cut(s)	667, 903
MalI	GATC	5 cut(s)	51, 750, 1011, 1068, 1094
MboI	GATC	5 cut(s)	49, 748, 1009, 1066, 1092
MflI	RGATCY	1 cut(s)	1009
MluCI	AATT	5 cut(s)	226, 389, 722, 1361, 1488
MlyI	GAGTC	3 cut(s)	527, 1100, 1126
MmeI	TCCRAC	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	697
MroI	TCCGGA	1 cut(s)	572
MroXI	GAANNNNTTC	1 cut(s)	726
MspA1I	CMGCKG	1 cut(s)	1473
MspCI	CTTAAG	1 cut(s)	758
MspI	CCGG	4 cut(s)	58, 117, 147, 573
MspR9I	CCNGG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	442
MwoI	GCNNNNNNNGC	4 cut(s)	77, 220, 1034, 1470
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	5 cut(s)	49, 748, 1009, 1066, 1092
NheI	GCTAGC	1 cut(s)	29
NlaIII	CATG	7 cut(s)	640, 791, 904, 1081, 1154, 1305, 1358
NlaIV	GGNNCC	2 cut(s)	151, 644
NmuCI	GTSAC	1 cut(s)	667
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	1 cut(s)	904
PciI	ACATGT	1 cut(s)	900
PctI	GAATGC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	3 cut(s)	8, 1349, 1367
PkrI	GCNGC	6 cut(s)	290, 339, 777, 948, 1267, 1270
PleI	GAGTC	3 cut(s)	526, 1100, 1126
PpsI	GAGTC	3 cut(s)	526, 1100, 1126
Ppu21I	YACGTR	2 cut(s)	505, 943
PpuMI	RGGWCCY	1 cut(s)	642
PscI	ACATGT	1 cut(s)	900
PshBI	ATTAAT	1 cut(s)	1257
Psp1406I	AACGTT	1 cut(s)	1216
Psp5II	RGGWCCY	1 cut(s)	642
PspN4I	GGNNCC	2 cut(s)	151, 644
PspPI	GGNCC	6 cut(s)	60, 149, 570, 642, 1199, 1449
PspPPI	RGGWCCY	1 cut(s)	642
PsuI	RGATCY	1 cut(s)	1009
PvuII	CAGCTG	1 cut(s)	1473
RsaI	GTAC	2 cut(s)	503, 1251
RsaNI	GTAC	2 cut(s)	502, 1250
Rsr2I	CGGWCCG	1 cut(s)	60
RsrII	CGGWCCG	1 cut(s)	60
SatI	GCNGC	6 cut(s)	289, 338, 776, 947, 1266, 1269
Sau3AI	GATC	5 cut(s)	49, 748, 1009, 1066, 1092
Sau96I	GGNCC	6 cut(s)	60, 149, 570, 642, 1199, 1449
SchI	GAGTC	3 cut(s)	527, 1100, 1126
ScrFI	CCNGG	1 cut(s)	147
SfaNI	GCATC	4 cut(s)	590, 899, 1024, 1037
SinI	GGWCC	6 cut(s)	60, 149, 570, 642, 1199, 1449
SmlI	CTYRAG	2 cut(s)	758, 881
SmoI	CTYRAG	2 cut(s)	758, 881
SnaBI	TACGTA	1 cut(s)	505
Sse9I	AATT	5 cut(s)	226, 389, 722, 1361, 1488
SsiI	CCGC	4 cut(s)	5, 27, 440, 509
SspMI	CTAG	4 cut(s)	30, 992, 1326, 1421
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	984
TaiI	ACGT	6 cut(s)	69, 104, 507, 945, 1129, 1219
TaqI	TCGA	4 cut(s)	132, 524, 1095, 1224
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	5 cut(s)	226, 389, 722, 1361, 1488
TfiI	GAWTC	3 cut(s)	8, 1349, 1367
TscAI	CASTG	2 cut(s)	279, 1092
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	6 cut(s)	288, 337, 775, 946, 1265, 1268
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	5 cut(s)	255, 876, 1094, 1332, 1468
TspRI	CASTG	2 cut(s)	279, 1092
Vha464I	CTTAAG	1 cut(s)	758
VpaK11BI	GGWCC	6 cut(s)	60, 149, 570, 642, 1199, 1449
VspI	ATTAAT	1 cut(s)	1257
XapI	RAATTY	2 cut(s)	226, 1488
XceI	RCATGY	1 cut(s)	904
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	4 cut(s)	30, 992, 1326, 1421
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.